mRNA_H-elongata_contig20964.6055.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20964.6055.1
Unique NamemRNA_H-elongata_contig20964.6055.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20964.6055.1 vs. uniprot
Match: D7FZK2_ECTSI (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK2_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.230e-58
Identity = 97/143 (67.83%), Postives = 118/143 (82.52%), Query Frame = 1 
Query:    1 QFGAGFGLLYGALLESFKNPPQPRPTDKVVLKPIQSQVMSKAVTTMARQSLMLAGVSAVYSAGECGAEAIRGTDDVVNTAAGACLAGAAVGMKTGKITHMCAGCLGAALLMSTVRLGTDGN-DKAMNRERLDKKRAGKREKLE 426
            Q GAG GLL+GA+ ESFKNPPQPRPTDKVVL P +S VM+KA+++M RQ+ M+A V+ VYSAGECG+E +RG DD VN+A GAC+A  A G+KTGKI+H CAGCLG A++MS VRLGTD N  K+++R RLD KRAGKREKLE
Sbjct:   18 QCGAGMGLLFGAVQESFKNPPQPRPTDKVVLNPPKSDVMAKAMSSMGRQAFMMAAVAVVYSAGECGSEYVRGKDDAVNSAVGACMAAGAAGLKTGKISHACAGCLGGAVIMSAVRLGTDINGSKSLDRARLDAKRAGKREKLE 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20964.6055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZK2_ECTSI1.230e-5867.83Mitochondrial import inner membrane translocase su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20964contigH-elongata_contig20964:960..2236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11-like
Ec32 orthologEc-01_010150.1
Exons3
Model size441
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20964.6055.1prot_H-elongata_contig20964.6055.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20964 960..2236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.432281-CDS-H-elongata_contig20964:959..11511622930171.432281-CDS-H-elongata_contig20964:959..1151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 960..1151 +
1691679307.826708-CDS-H-elongata_contig20964:959..11511691679307.826708-CDS-H-elongata_contig20964:959..1151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 960..1151 +
1622930171.4502861-CDS-H-elongata_contig20964:1709..18671622930171.4502861-CDS-H-elongata_contig20964:1709..1867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 1710..1867 +
1691679307.8347137-CDS-H-elongata_contig20964:1709..18671691679307.8347137-CDS-H-elongata_contig20964:1709..1867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 1710..1867 +
1622930171.4672654-CDS-H-elongata_contig20964:2145..22361622930171.4672654-CDS-H-elongata_contig20964:2145..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 2146..2236 +
1691679307.84341-CDS-H-elongata_contig20964:2145..22361691679307.84341-CDS-H-elongata_contig20964:2145..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 2146..2236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20964.6055.1

>prot_H-elongata_contig20964.6055.1 ID=prot_H-elongata_contig20964.6055.1|Name=mRNA_H-elongata_contig20964.6055.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
QFGAGFGLLYGALLESFKNPPQPRPTDKVVLKPIQSQVMSKAVTTMARQS
LMLAGVSAVYSAGECGAEAIRGTDDVVNTAAGACLAGAAVGMKTGKITHM
CAGCLGAALLMSTVRLGTDGNDKAMNRERLDKKRAGKREKLETAQA*
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mRNA from alignment at H-elongata_contig20964:960..2236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20964.6055.1 ID=mRNA_H-elongata_contig20964.6055.1|Name=mRNA_H-elongata_contig20964.6055.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1277bp|location=Sequence derived from alignment at H-elongata_contig20964:960..2236+ (Himanthalia elongata Himel1 dioecious)
CAATTCGGGGCGGGCTTTGGATTGCTCTACGGCGCTCTTCTGGAGTCGTT
CAAGAACCCCCCTCAACCAAGACCGACGGACAAGGTCGTCTTGAAGCCCA
TCCAAAGCCAGGTTATGTCCAAAGCGGTGACCACGATGGCCAGACAGTCA
CTCATGCTGGCGGGCGTTTCGGCCGTTTACAGCGCTGGGGAGGTGAGGTG
GCCATACATAAGCAGTACGTTATGTTTCTCGAGCAACCCCTCTAGCGTTT
TTGTTGGATGCTCGGGGTTTCCCTACAAGGTACACGGTACGTATCTCTCG
CACCACTTTGTTCTTGTTAGAGAAGTTCGCACACTGTTATTTACAAAATC
TTGCAGTGAGTTTGTGCCGCCCCCGCTGTCGTCCCGTCGGCGCGTGGTTA
CTGGTCCAACAGCTAAGTCACGCAAATGATGCCCCCCCCCACCCCTCCCT
TCCCGAAGAAACGTTGGCAAAACCTTCCGAGTACCGTACTACTGCTACAA
AGTGTAGGAGAAAACAAGATCCTGCTCAACCGTGCAGCGAAGGCATGTGT
TCTCAGACCGCGACGTACCTTAATGGACTGTTTGTGTAATCTATCATCGA
CTCCACCGTTTTGGCTGTACTACTGCACGTGGCGACTTTTGCTGATGATG
GAAACCCCATCAAACGCCTCGCTGCTCGTCGGGGGCCATGCCTTTTTGGT
TTACCCGGGAATGGCTTGGAACGTGATGGTCGACGATGGTCACCACACAG
TGTGGTGCGGAGGCAATCCGGGGGACGGATGACGTTGTCAACACTGCCGC
CGGCGCGTGCCTCGCCGGGGCCGCCGTAGGGATGAAGACGGGAAAGATCA
CGCACATGTGTGCGGGGTGCCTCGGGGCCGCGCTCCTCATGTCCACCGTT
AGGTTGGGGTAAGAGACATTGTAAAACTATTTAGAAACTCAACACTGCAT
CACTAAACGTTGTCACAAGGGTTCTCATCAAGCATGGTCACTCGTAGGTC
TCGGCTGCCTTGCCCTCTCCCCCCAGGACCGCATCGTTCGTGCAGTCGGC
CTTCACTGGCACATGGAGCTCTGAGTCTCCTAGCTGCGTTGTTGGCGATT
CCGCTCTACACTCCCAACTTGGCGCTCAATCGCTCCACGCTTACCCCTCC
CCTGCATGTCTTGATTGGCTGACGTCATCCGCACAGCACCGACGGCAATG
ACAAGGCCATGAACAGGGAGCGCCTAGATAAGAAAAGGGCAGGCAAACGC
GAAAAGCTAGAGACTGCGCAAGCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig20964:960..2236+

>mRNA_H-elongata_contig20964.6055.1 ID=mRNA_H-elongata_contig20964.6055.1|Name=mRNA_H-elongata_contig20964.6055.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig20964:960..2236+ (Himanthalia elongata Himel1 dioecious)
CAATTCGGGGCGGGCTTTGGATTGCTCTACGGCGCTCTTCTGGAGTCGTT
CAAGAACCCCCCTCAACCAAGACCGACGGACAAGGTCGTCTTGAAGCCCA
TCCAAAGCCAGGTTATGTCCAAAGCGGTGACCACGATGGCCAGACAGTCA
CTCATGCTGGCGGGCGTTTCGGCCGTTTACAGCGCTGGGGAGCAATTCGG
GGCGGGCTTTGGATTGCTCTACGGCGCTCTTCTGGAGTCGTTCAAGAACC
CCCCTCAACCAAGACCGACGGACAAGGTCGTCTTGAAGCCCATCCAAAGC
CAGGTTATGTCCAAAGCGGTGACCACGATGGCCAGACAGTCACTCATGCT
GGCGGGCGTTTCGGCCGTTTACAGCGCTGGGGAGTGTGGTGCGGAGGCAA
TCCGGGGGACGGATGACGTTGTCAACACTGCCGCCGGCGCGTGCCTCGCC
GGGGCCGCCGTAGGGATGAAGACGGGAAAGATCACGCACATGTGTGCGGG
GTGCCTCGGGGCCGCGCTCCTCATGTCCACCGTTAGGTTGGGTGTGGTGC
GGAGGCAATCCGGGGGACGGATGACGTTGTCAACACTGCCGCCGGCGCGT
GCCTCGCCGGGGCCGCCGTAGGGATGAAGACGGGAAAGATCACGCACATG
TGTGCGGGGTGCCTCGGGGCCGCGCTCCTCATGTCCACCGTTAGGTTGGG
CACCGACGGCAATGACAAGGCCATGAACAGGGAGCGCCTAGATAAGAAAA
GGGCAGGCAAACGCGAAAAGCTAGAGACTGCGCAAGCGTAGCACCGACGG
CAATGACAAGGCCATGAACAGGGAGCGCCTAGATAAGAAAAGGGCAGGCA
AACGCGAAAAGCTAGAGACTGCGCAAGCGTAG
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