mRNA_H-elongata_contig209610.6054.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209610.6054.1
Unique NamemRNA_H-elongata_contig209610.6054.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: D7FPW5_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPW5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.830e-36
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:   13 KKVPELREALTTFRPASNGAGG----NLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
            +KVPELREALT+FRP S+G+G     NL P FTASL ET N ADRST+AIPP  FVQVLRQLFPQFAQQGPRGGFMQQDAEE YS+VVNTL
Sbjct:  124 RKVPELREALTSFRPTSSGSGADPSANLVPMFTASLRETFNAADRSTEAIPPAMFVQVLRQLFPQFAQQGPRGGFMQQDAEELYSSVVNTL 214
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BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A6V1NRX8_HETAK (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRX8_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 9.710e-20
Identity = 52/88 (59.09%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   19 VPELREALTTFRPA---SNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
            VPELR AL     A    +G  GN    F  +L ET    D ST++ PP+ FVQVLR LFPQFAQQGPRGG+MQQDAEE YSAV  TL
Sbjct:  128 VPELRSALGNKAAAPSPDDGPSGN----FARALAETYRGLDASTESAPPVVFVQVLRGLFPQFAQQGPRGGYMQQDAEELYSAVQTTL 211
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: T0QYK8_SAPDV (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QYK8_SAPDV)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:   19 VPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
             P+ REAL  ++    G   +L+  FT+SL +T  Q D + D+IPPM FV  LR+ FPQFAQQGPRGG+MQQD++EF SA+ +TL
Sbjct:  127 APDFREALKEYK---GGLSADLAHNFTSSLRDTYAQLDSNLDSIPPMMFVDTLRRAFPQFAQQGPRGGYMQQDSDEFVSALFSTL 208
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A024UKZ5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024UKZ5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.000e-18
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   19 VPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
             P+ REAL  ++    G   +L+  FT+SL +T  Q D + D+IPP+ FV  LR+ FPQFAQQGPRGGFMQQD++EF S++  TL
Sbjct:  126 APDFREALKEYK---GGMTSDLAHNFTSSLRDTFYQLDANIDSIPPILFVDTLRRAFPQFAQQGPRGGFMQQDSDEFLSSLFGTL 207
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A485LT02_9STRA (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LT02_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.030e-18
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   19 VPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
             P+ REAL  ++    G   NL+  FT+SL +   Q D + D+IPP+ FV  LR+ FPQFAQQGPRGG+MQQD+EEF S +  TL
Sbjct:  126 APDFREALKEYK---GGMNANLAHNFTSSLRDMFYQLDANIDSIPPILFVDTLRRAFPQFAQQGPRGGYMQQDSEEFLSTLFGTL 207
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A3R6W8W6_9STRA (Ubiquitinyl hydrolase 1 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W8W6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.150e-18
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   19 VPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
             PE REAL  ++    G   +L+  FT+SL +   Q D + D+IPP+ FV  LR+ FPQFAQQGPRGG+MQQD++EF S++  TL
Sbjct:  126 APEFREALKEYK---GGMTSDLAHNFTSSLRDMFYQLDANIDSIPPILFVDTLRRAFPQFAQQGPRGGYMQQDSDEFLSSLFGTL 207
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A1V9ZQ06_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ06_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.860e-18
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   19 VPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
             P+ R+AL  ++    G   +L+  FT+SL +   Q D + D+IPPM FV  LR+ FPQFAQQ PRGG+MQQD++EF SA+ NTL
Sbjct:  127 APDFRDALKEYK---GGLSADLAHNFTSSLRDMYAQLDANIDSIPPMMFVDTLRRAFPQFAQQQPRGGYMQQDSDEFVSALFNTL 208
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A7S2DHH2_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHH2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.320e-17
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   13 KKVPELREALTTFRPASNGAGGNLS-PQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
            + +PELRE+L+ F+P   G G +    + T +L  TLN ADR+T A PPM+F   LRQL PQFAQ G  G  MQQDAEE YS+ + ++
Sbjct:  127 RAIPELRESLSAFQPRGGGGGASAGCDRLTFALRNTLNGADRTTSAFPPMEFWTNLRQLHPQFAQTGRTGAPMQQDAEELYSSAMASI 214
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A2D4C8B6_PYTIN (Multifunctional fusion protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8B6_PYTIN)

HSP 1 Score: 84.7 bits (208), Expect = 3.510e-17
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   13 KKVPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
            + V E R+AL  +   S G  G+L+  FT +L +   Q D S D+I P  FV VLR+ FPQFAQQ PRGGFMQQD+EEF + + +TL
Sbjct:  577 RPVSEFRDALKQY---SGGVSGDLANNFTTALRDMYQQLDASVDSITPALFVSVLRRAFPQFAQQSPRGGFMQQDSEEFLATLWSTL 660
[Close]
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Match: A0A8K1FF25_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF25_PYTOL)

HSP 1 Score: 82.8 bits (203), Expect = 1.540e-16
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   13 KKVPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAIPPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL 273
            + V E R+AL  +   S G  G+++  F+ +L +   Q D S D I P  FV VLR+ FPQFAQQ PRGGFMQQD+EEF S + +TL
Sbjct:  127 RPVTEFRDALKQY---SGGVSGDIANNFSTALRDMYQQLDTSVDNITPALFVTVLRRAFPQFAQQSPRGGFMQQDSEEFLSTLFSTL 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209610.6054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPW5_ECTSI1.830e-3678.02Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A6V1NRX8_HETAK9.710e-2059.09Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heteros... [more]
T0QYK8_SAPDV1.120e-1952.94Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Sapr... [more]
A0A024UKZ5_9STRA1.000e-1851.76Ubiquitin carboxyl-terminal hydrolase n=7 Tax=Apha... [more]
A0A485LT02_9STRA1.030e-1851.76Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Apha... [more]
A0A3R6W8W6_9STRA2.150e-1850.59Ubiquitinyl hydrolase 1 n=3 Tax=Aphanomyces astaci... [more]
A0A1V9ZQ06_9STRA4.860e-1850.59Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thra... [more]
A0A7S2DHH2_9STRA3.320e-1750.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dict... [more]
A0A2D4C8B6_PYTIN3.510e-1750.57Multifunctional fusion protein n=1 Tax=Pythium ins... [more]
A0A8K1FF25_PYTOL1.540e-1649.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209610contigH-elongata_contig209610:291..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue8.2e-31
Seed eggNOG ortholog2880.D7FPW5
KEGG koko:K11843
EggNOG free text desc.negative regulation of ER-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1872@1,KOG1872@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-01_008430.1
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.3572545-CDS-H-elongata_contig209610:290..4611622930171.3572545-CDS-H-elongata_contig209610:290..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209610 291..461 +
1691679307.8043048-CDS-H-elongata_contig209610:290..4611691679307.8043048-CDS-H-elongata_contig209610:290..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209610 291..461 +
1622930171.3691227-CDS-H-elongata_contig209610:743..8451622930171.3691227-CDS-H-elongata_contig209610:743..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209610 744..845 +
1691679307.8191683-CDS-H-elongata_contig209610:743..8451691679307.8191683-CDS-H-elongata_contig209610:743..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209610 744..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209610.6054.1prot_H-elongata_contig209610.6054.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209610 291..845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209610.6054.1

>prot_H-elongata_contig209610.6054.1 ID=prot_H-elongata_contig209610.6054.1|Name=mRNA_H-elongata_contig209610.6054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
IHFFKKVPELREALTTFRPASNGAGGNLSPQFTASLGETLNQADRSTDAI
PPMKFVQVLRQLFPQFAQQGPRGGFMQQDAEEFYSAVVNTL
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mRNA from alignment at H-elongata_contig209610:291..845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209610.6054.1 ID=mRNA_H-elongata_contig209610.6054.1|Name=mRNA_H-elongata_contig209610.6054.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig209610:291..845+ (Himanthalia elongata Himel1 dioecious)
ATTCATTTTTTTAAAAAGGTGCCCGAGTTGCGTGAGGCCCTGACCACCTT
CCGACCGGCTAGCAACGGGGCGGGTGGCAACCTCTCGCCACAGTTCACGG
CTTCATTGGGGGAGACTCTCAACCAGGCGGATCGCTCAACAGACGCCATC
CCGCCCATGAAGTTCGTTCAGGTTTGTGACTTGAAAAAATATTTTAATTT
TTTACTTAATCGAGGGAAGAGTCTCACGACGCACTGCGTGCCTGATATAA
CGGTTGATGCTGCTACAGCTACCGCATGGCCGACATACTAGGTTCGATCT
GACGGCATGTCAGCACGTTCGTCGACATCAAAGCCCGAGTCGAAAGTGTA
CTGCCCGGATATCGTTCTTGCAAGTCCCCGGGGCGGAGGTCGTCCATTGT
TAAGCGCTATGTTTTATGTTGTGGCGTTATGTTCCCCTGAACGGCGCTCT
CAGGTGTTAAGGCAGCTTTTCCCGCAGTTCGCTCAGCAGGGACCCCGAGG
AGGCTTCATGCAGCAGGACGCCGAGGAATTCTACAGCGCGGTAGTGAACA
CGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig209610:291..845+

>mRNA_H-elongata_contig209610.6054.1 ID=mRNA_H-elongata_contig209610.6054.1|Name=mRNA_H-elongata_contig209610.6054.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig209610:291..845+ (Himanthalia elongata Himel1 dioecious)
ATTCATTTTTTTAAAAAGGTGCCCGAGTTGCGTGAGGCCCTGACCACCTT
CCGACCGGCTAGCAACGGGGCGGGTGGCAACCTCTCGCCACAGTTCACGG
CTTCATTGGGGGAGACTCTCAACCAGGCGGATCGCTCAACAGACGCCATC
CCGCCCATGAAGTTCGTTCAGATTCATTTTTTTAAAAAGGTGCCCGAGTT
GCGTGAGGCCCTGACCACCTTCCGACCGGCTAGCAACGGGGCGGGTGGCA
ACCTCTCGCCACAGTTCACGGCTTCATTGGGGGAGACTCTCAACCAGGCG
GATCGCTCAACAGACGCCATCCCGCCCATGAAGTTCGTTCAGGTGTTAAG
GCAGCTTTTCCCGCAGTTCGCTCAGCAGGGACCCCGAGGAGGCTTCATGC
AGCAGGACGCCGAGGAATTCTACAGCGCGGTAGTGAACACGCTAGTGTTA
AGGCAGCTTTTCCCGCAGTTCGCTCAGCAGGGACCCCGAGGAGGCTTCAT
GCAGCAGGACGCCGAGGAATTCTACAGCGCGGTAGTGAACACGCTA
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