mRNA_H-elongata_contig20961.6053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20961.6053.1
Unique NamemRNA_H-elongata_contig20961.6053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: D8LGM4_ECTSI (Putative carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGM4_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 2.010e-73
Identity = 154/206 (74.76%), Postives = 170/206 (82.52%), Query Frame = 1
Query:    1 SAVSRTLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILGSGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEISA 618
            ++VSRTLG+CLRETGQALHRFGHQC DSTLI ETFSRHRQ+MPLAA+AP VAK AWVAPSATL+GEVDVSG ASVWYGAV+RGD G+V+IG GSNVQDD ILGSG+V++G GVT                  XXXXXXXXXXXXXXXXXXXXXXXXXXX      VWGGNPAVYMR+VTP EKAQLTKSAEGYVALAG+H+  I+A
Sbjct:    2 TSVSRTLGRCLRETGQALHRFGHQCQDSTLIMETFSRHRQLMPLAASAPAVAKDAWVAPSATLVGEVDVSGEASVWYGAVVRGDTGAVAIGKGSNVQDDAILGSGDVSVGAGVTIGHGAIIKSSTVADGSMVXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGAGQVWGGNPAVYMRDVTPAEKAQLTKSAEGYVALAGSHATSIAA 207          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A835Z4X6_9STRA (Putative carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.330e-37
Identity = 86/206 (41.75%), Postives = 110/206 (53.40%), Query Frame = 1
Query:    1 SAVSRTLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILGSGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEISA 618
            +A++R +GK +RETGQAL   G    D  + QE F+RHR  MPL A  P +A  AWVAP+A+++G+V ++  ASVWYGAV+RGDA  V++GA SNVQDD +L SG  A+GE VT                                                   +W GNPAV+ R +TP+EKA L KSA  Y ALA  H AE  A
Sbjct:    2 AALTRMIGKMVRETGQALEVLGVIAGDDKIHQEYFTRHRHTMPLGANKPALAPGAWVAPTASVVGDVALATDASVWYGAVVRGDAQRVTVGARSNVQDDAVL-SGGAALGEDVTVGHGAIIAGSTVGDRCLIGMKAVLDGADVASDAIIAANAVVRPGSKVLSGQMWAGNPAVFRRALTPDEKAYLAKSAASYAALAAAHRAEDDA 206          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A067C675_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C675_SAPPC)

HSP 1 Score: 114 bits (286), Expect = 1.180e-25
Identity = 96/212 (45.28%), Postives = 124/212 (58.49%), Query Frame = 1
Query:    7 VSRTLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILGSGNV---------AIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEI 612
            V+  LG+C+RETGQA+ R G +   S   +E FSRHRQIM L    P+VA  +WVAP+A++IG+V++   ASVWYG V+RGD   VSIG  +N+QD  ++ + +          +IG  VT                            XXXXXXXXXXXXXXXXXXXXX   +W G+PA Y+R+VT +E A LT  A+ Y  LA THS E 
Sbjct:    5 VTFELGRCVRETGQAMDRLGLRVLGSNEAREKFSRHRQIMNLYDKVPSVAYDSWVAPNASVIGDVEICNDASVWYGVVIRGDLNKVSIGNRTNIQDRTVIHTSSTTTPGLAPGASIGNDVTVGHGCILYSCTIENNCLIGMGSIVLDGAXXXXXXXXXXXXXXXXXXXXXSGQLWAGSPAQYVRDVTEDEIADLTNQAKEYKKLADTHSDEF 216          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A7S1U829_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U829_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.770e-25
Identity = 119/228 (52.19%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   16 TLGKCLRETGQALHRFGHQCTDSTLIQETF----SRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVIL----GSGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEISA*LF*VPALSCSCGGRREGS 675
            T+G+ LRETGQA+ R G    D   ++ TF    +RHRQ+M L    P+++   WVAPSA+ IG+V VS GASVWYG VLRGDA  + +G GSN+QD   +    G+G V IG  VT           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +W GNPA ++R++TP+E   + K AE Y  L+G H  E +     V  L  S G + +GS
Sbjct:    7 TIGRALRETGQAMDRLGLAAMD---VENTFLVPLNRHRQLMNLEGKVPSLSGDVWVAPSASAIGDVAVSAGASVWYGTVLRGDAAPIVVGPGSNIQDLTSITTSEGAG-VTIGSKVTVGHKAMLHGCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-LWAGNPATHVRDLTPDEVQAMVKQAEAYATLSGKHRTEFAD----VADLMDSEGAQAKGS 225          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A6J1GIE2_CUCMO (gamma carbonic anhydrase 1, mitochondrial-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1GIE2_CUCMO)

HSP 1 Score: 113 bits (283), Expect = 6.440e-25
Identity = 91/208 (43.75%), Postives = 119/208 (57.21%), Query Frame = 1
Query:   16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
            T+G  +RETGQA+ R G +       QE  SRHR +M +   AP V K A+VAPSA++IG+V V  G+S+WYG VLRGDA S+S+G+G+N+QD+ ++       SG V    IG+ VT                              XXXXXXXXXXXXXXX       VWGGNPA ++R +T EE+A +++SA  Y  LA  H AE
Sbjct:   10 TVGFWIRETGQAIDRLGCRLQGRYFFQEQLSRHRTLMNVFDKAPVVDKDAFVAPSASIIGDVQVGSGSSIWYGCVLRGDANSISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFIGTGAMLLDGSIVXXXXXXXXXXXXXXXTKIPSGEVWGGNPAKFLRKLTDEERAFISQSATNYSDLAQVHVAE 217          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A7S2S8M3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8M3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.020e-24
Identity = 91/198 (45.96%), Postives = 116/198 (58.59%), Query Frame = 1
Query:   19 LGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG---SGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTH 600
            LG+ LRETGQAL+  GH   D    ++ F+RHR +M L   AP VA   +VAP A+++G+V ++  +S+WY AVLRGD+ +V+IG GSNVQD+V++    S    IG  VT                             XXXXXXXXXXXXXXXXXX     +WGG PAVYMR++   E +QLTK A  Y ALA  H
Sbjct:   17 LGRALRETGQALNVLGHMAGDDFSFRQPFTRHRTLMSLFDKAPAVASQVFVAPCASVVGDVALATKSSIWYSAVLRGDSSAVTIGEGSNVQDNVVIKTTKSSPAHIGSDVTIGHNAVLTGCTVGNRVLVGMGAVVSEGVEXXXXXXXXXXXXXXXXXXVPSKQLWGGAPAVYMRDLKDAELSQLTKQATEYSALADVH 214          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A7N0RBJ5_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RBJ5_KALFE)

HSP 1 Score: 112 bits (281), Expect = 1.300e-24
Identity = 76/208 (36.54%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
            ++G  +RETGQAL R G +   +   QE  SRHR +M +   AP V K A+VAPSA+++G+V V  G+S+WYG V+RGD  SVSIG+G+N+QD+ ++       SG V    IG+ VT                                                    VWGGNPA ++R +T EE A +T+SA  Y  LA  H+AE
Sbjct:   10 SVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRALMNIFDKAPVVDKDAFVAPSASIVGDVQVGRGSSIWYGCVVRGDVNSVSIGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFIGMGATLLDGVFVEKHSMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTEEEMAFITQSATNYANLAQVHAAE 217          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A8B8MU54_9MYRT (gamma carbonic anhydrase 1, mitochondrial n=36 Tax=Mesangiospermae TaxID=1437183 RepID=A0A8B8MU54_9MYRT)

HSP 1 Score: 112 bits (280), Expect = 1.870e-24
Identity = 76/208 (36.54%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
            T+G  +RETGQAL R G +   +   QE  SRHR +M +   AP V K A+VAPSA++IG+V V  G+S+WYG VLRGD  S+S+G+G+N+QD+ ++       SG V    IG+ VT                                                    VWGGNPA ++R +T EE A +++SA  Y  LA  H+AE
Sbjct:   10 TVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNSRIASGEVWGGNPAKFLRKLTDEEVAFISQSATNYSNLAQVHAAE 217          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A8J5BTF2_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5BTF2_ZINOF)

HSP 1 Score: 111 bits (278), Expect = 1.990e-24
Identity = 75/208 (36.06%), Postives = 103/208 (49.52%), Query Frame = 1
Query:   16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
            T+G  +RETGQA+ R G +   + L QE  SRHR +M L    P+V K A+VAPSA++IG+V V  G+S+WYG VL+GD  S+ +G+G+N+QD+ ++       SG V    IG+ VT                                                    VWGGNPA +MR +T EE A + +SA  Y  LA  H+AE
Sbjct:   10 TVGFWIRETGQAIDRLGCRLQGNYLFQEQLSRHRTLMNLFDKVPSVHKDAFVAPSASIIGDVQVGQGSSIWYGCVLQGDVNSIHVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGTGAVLLDGVIVEKHGMVAAGSLVRQNTRVPCGEVWGGNPAKFMRKLTEEEMAFIVQSAANYANLAQVHAAE 217          
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A5N5H4M1_9ROSA (Gamma carbonic anhydrase 1 n=2 Tax=Maleae TaxID=721813 RepID=A0A5N5H4M1_9ROSA)

HSP 1 Score: 112 bits (279), Expect = 2.310e-24
Identity = 76/208 (36.54%), Postives = 105/208 (50.48%), Query Frame = 1
Query:   16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
            T+G  +RETGQA+ R G +   +   QE  SRHR +M +   AP V K A+VAPSA++IG+V V  G+S+WYG VLRGDA SVSIG+G+N+QD+ ++       +G V    IG+ VT                                                    VWGGNPA ++R +T +E A +++SA  Y  LA  H+AE
Sbjct:   10 TVGFWIRETGQAIDRLGSRLQGNYYFQEQLSRHRTLMNVFDKAPVVDKEAFVAPSASIIGQVQVGRGSSIWYGCVLRGDANSVSIGSGTNIQDNSLVHVAKSNLTGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGVAATLLDGVYVEKHAMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTEDEMAFISQSALNYSNLAQVHAAE 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGM4_ECTSI2.010e-7374.76Putative carbonic anhydrase n=2 Tax=Ectocarpus Tax... [more]
A0A835Z4X6_9STRA5.330e-3741.75Putative carbonic anhydrase n=1 Tax=Tribonema minu... [more]
A0A067C675_SAPPC1.180e-2545.28Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A7S1U829_9STRA1.770e-2552.19Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6J1GIE2_CUCMO6.440e-2543.75gamma carbonic anhydrase 1, mitochondrial-like n=3... [more]
A0A7S2S8M3_9STRA1.020e-2445.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7N0RBJ5_KALFE1.300e-2436.54Uncharacterized protein n=2 Tax=Kalanchoe fedtsche... [more]
A0A8B8MU54_9MYRT1.870e-2436.54gamma carbonic anhydrase 1, mitochondrial n=36 Tax... [more]
A0A8J5BTF2_ZINOF1.990e-2436.06Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A5N5H4M1_9ROSA2.310e-2436.54Gamma carbonic anhydrase 1 n=2 Tax=Maleae TaxID=72... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20961contigH-elongata_contig20961:498..5087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog2880.D8LGM4
EggNOG free text desc.carnitine dehydratase activity
EggNOG OGs2S25M@2759,COG0663@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative carbonic anhydrase
Ec32 orthologEc-10_002770.1
Exons5
Model size1419
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.2036746-UTR-H-elongata_contig20961:497..6001622930171.2036746-UTR-H-elongata_contig20961:497..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20961 498..600 +
1691679307.7339363-UTR-H-elongata_contig20961:497..6001691679307.7339363-UTR-H-elongata_contig20961:497..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20961 498..600 +
1622930171.2219362-UTR-H-elongata_contig20961:2656..26761622930171.2219362-UTR-H-elongata_contig20961:2656..2676Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20961 2657..2676 +
1691679307.7467577-UTR-H-elongata_contig20961:2656..26761691679307.7467577-UTR-H-elongata_contig20961:2656..2676Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20961 2657..2676 +
1622930171.31008-UTR-H-elongata_contig20961:4289..50871622930171.31008-UTR-H-elongata_contig20961:4289..5087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20961 4290..5087 +
1691679307.7926588-UTR-H-elongata_contig20961:4289..50871691679307.7926588-UTR-H-elongata_contig20961:4289..5087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20961 4290..5087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.239158-CDS-H-elongata_contig20961:2676..28001622930171.239158-CDS-H-elongata_contig20961:2676..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 2677..2800 +
1691679307.7541-CDS-H-elongata_contig20961:2676..28001691679307.7541-CDS-H-elongata_contig20961:2676..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 2677..2800 +
1622930171.2580926-CDS-H-elongata_contig20961:3245..33641622930171.2580926-CDS-H-elongata_contig20961:3245..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 3246..3364 +
1691679307.7631023-CDS-H-elongata_contig20961:3245..33641691679307.7631023-CDS-H-elongata_contig20961:3245..3364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 3246..3364 +
1622930171.2771502-CDS-H-elongata_contig20961:3718..38471622930171.2771502-CDS-H-elongata_contig20961:3718..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 3719..3847 +
1691679307.7726212-CDS-H-elongata_contig20961:3718..38471691679307.7726212-CDS-H-elongata_contig20961:3718..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 3719..3847 +
1622930171.2929015-CDS-H-elongata_contig20961:4163..42891622930171.2929015-CDS-H-elongata_contig20961:4163..4289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 4164..4289 +
1691679307.7822988-CDS-H-elongata_contig20961:4163..42891691679307.7822988-CDS-H-elongata_contig20961:4163..4289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20961 4164..4289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20961.6053.1prot_H-elongata_contig20961.6053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20961 2677..4289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20961.6053.1

>prot_H-elongata_contig20961.6053.1 ID=prot_H-elongata_contig20961.6053.1|Name=mRNA_H-elongata_contig20961.6053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIG
AGSNVQDDVILGSGNVAIGEGVTIGHGAIIKESTVADGSMIGMKSILAET
SVEEGSIVAAGAVVTPGTVVGAGEVWGGNPAVYMRNVTPEEKAQLTKSAE
GYVALAGTHSAEISA*
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mRNA from alignment at H-elongata_contig20961:498..5087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20961.6053.1 ID=mRNA_H-elongata_contig20961.6053.1|Name=mRNA_H-elongata_contig20961.6053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4590bp|location=Sequence derived from alignment at H-elongata_contig20961:498..5087+ (Himanthalia elongata Himel1 dioecious)
AGTGCTGTTTCTCGCACCCTGGGAAAGTGTCTGCGAGAGACAGGGCAAGC CCTCCACCGATTCGGTCACCAGTGCACGGATAGCACGCTAATACAAGAAA CATGTAAGTGCCAGGGCATAGTATTCGGTTCCTGAGCTGCAGCAATGACT GCAAGACTGTTGTTCTGATTTGAAAATTTTCACAGCGCCGCTCACGAATG TGACGTAGGTACGTACTCCTACCGGACACCTTCCCAGATACTACCGTCGT CACTGGAGGAGCGGAACGCACGTGCAGTTATGTTGTACGTTAAGCCCCTC TAGGTAAACCTCTCAACGTACATATCCGGATTTCCCGGCAGAAGATGCTC CAGTTTTCCTCAAAAACGGCGTGCAAATGCCGTAAAACGGTTGCCAGATA TTCCCTCTCGACCTTGGTAATGTGACAGTACCGAAGTAAGCTGGCGTTGT AGGCAACACCTGAGCATGCCGCACAGGCAGCAACCCACAATATGTGTCTT TCAATTAGTGTAATCCTAGACCCTGGGACCAAGGGGCGTGATCGGGCTAT AGACCCAAGGCGAACCCGAGCTCGAGAGTTGAAGCACATCGATTGCCACG ATGTTTGTTCCGCCCGCAGTTTTTTCTGTGGTGCATTTTCTGTGACGTAT CCAAACATACCCAATATATAGAAAGCTTCCAGCACTCGTAGCACCTAACG CGAGTGTCGGTCTTATCATTTTGGGTGCATTCTGAAAGGCCTGGTAGTAA CGAGAGGGGCTTAACCAGTTTACCGCTGTGGTGACATTGGCTATCCATCG CAAATATTTACTCTCATCGAAAGGGTGTAAACGTACGTCAAGGTTGGGAT TCCTCGAGACCACGCTTTTGCTTATCCCCAGAAAATATACATAGACATCC GAGGACCTTGGGCACCGGATTTGCACCCGACACCGCGCTGCTTTTCATTA GTTTTCAACGGGCTTTGTAGCTCTTCGGTACCGGTACCCGGTTGATTCAC TCCCCGGCTCTGCCTGTCAGTGAGAACGCCTCCAACGCGGGGAGCCGGTA AACGAGACCCGGGGACAAGATCGGGACAAAATCGTACTGTCCCCGGGTTT CATACCCATTTTTTTCGGGGATCGTTTATTACACGAGACCCGGGTAAGCA CAGTTCCTGCGCTGCTTTCAGGCAGCTGCCGACCCAACCGCTACAACTGC TGACCCGCTGACCCAACCCGACCCTAACACTAACCCAAACCCACACCCAA ATCAAAGTTTACAGACCCAGCCGCTACAACTAACTGCTGACCCAACCCGA CCCTAACACTAACCCAAGCCCACATCCAAATCAAAGTTTACAGCTACTCC TGAAGCAACCCGACCCTAACGGGTCTGTAAAATTTGATTTGGGTGTAGGT TCAAAGTTTACAGCTGCAGACCCAACCGTTACAACTGCTGACGCAACCCC AACCAGACCCTAACGGGTCTGTAAACCTTGAACCTTGATTTGGGTCTGAG TGTTAGGGTCGGGTTGGGTTAGCAGTTGTAGCGGTTGGCTCAGCAGTTGT GATTTGGGTGTGGGTTAGGGTCGGGTTGGGTCAGCAGTTAGTTGTAGCGG TTGGATCTGTAAAATTTGATTTGGGTGTGGGTTTGGGTTAGTATTAGGGT CGAGTTGGGTCAGCAGTTGTAGCTGATGGGTCAGCATTTGCCTGAAAGCA GCGCAGGGCCTGGGTTTCCCCGGGTCTCACACTAAACGATTCCCAAAACA ATTGGAATGAAACCCGGGGACAGTACGATTTTGTCCCGATTTTGTCCCCG GGTCTCGTTTATTAAACGATCCCCGCGGATCTCGTTTACCGGCCCCCCTC CAACGCGCACGAGCTTCGACAACAACCCGAGATCACTTATCACTGTAGTT TTATTAATGTTTAAGAAAGGGTAGTTGTGCTCCACGAAAAGGCCTCGACG GGGGTAAGAGTCTTACACAATATTTCCCGGTTAGGAATGTTATGGTTGGA TTATGTTTATATACAGAAAGCTATGTCCGTTATCTCCGCCGCAGCTTGCA CTACATGAGGTGCTTTTAGCTCACACGATCCTTGACGTTTGCCATATCTT GCGGCCTTTTTTTTCTACTCCAAACTCTCGGCGTGTAAATTCTGGATTTC AACTCAAAGTCTCGCGACACCGTCAGATCATGCCCTTGGCGGCCGCAGCC CCTACGGTGGCGAAGGCCGCGTGGGTGGCTCCAAGCGCAACCCTGATTGG CGAGGTTGACGTTTCCGGTGGGGCGTCTGTATGGTACGGGGCCGTCCTCA GAGGTGAGAGGGTTGGAATGAGAAAGAAGAATGACAAATTATGTCGTTGC TGCTGTAGTACCTCTAATTTCACTTCTTTTGCTTGCGAAAGGGTCGGAAA AGGCGAAGGGGTTTGCTGGTGTGTGGATGGCGCCCATTTGCTGCTGCAGT TTGTAGCGTAAGAAAATGTAGGCTAATGTACCAGTAGCCTCAAGAGTACA GCGGAGGCAGAACAAGGGAGCGGGGCGGTGCCGAAGTATAGATTGACAAG AGAGGGGTAGCAATTAAATCCATCTTCTCGAAACTCGAGCGTTTCTTTTA TATAGTCAACGCATCCCTTTCCCCGTACATGTAACCAATACCCTTACCCC ATGTCCTCCTTATTCTGACATACTGTATTTAGTGATGTGAGCGTATGCGG TTTGTTGTGATGGTTTTGTACCACTCCGTCGATGCATCCTATCCATAGGT GACGCTGGGTCGGTATCCATCGGTGCTGGCAGCAACGTGCAGGATGACGT GATCCTTGGCTCCGGGAATGTCGCTATTGGCGAAGGAGTGACCATCGGCC ATGGAGCGATCATCAAGGTGCGGGTATTGATGCCTAGGGAATTGTCAATC TGCTGGAGCTGCGATAGGGCCGATGATGCTTACCTGTTTACCTACCGATC ATTTTAGCCCCGTTACAATGGTGGGCTTCATTAAAACAGAGAGGATATGG AGGGGCGACAAGACAGATGCCTCGCCTTAGCCGGCTAGGGAGGGAGATAT ACTCTTGAGTTGGGAACATGCTCTTAGAGATGAAATCAGTGCGGAAACAA GAATCTAGTTCCAGGCCTTTGCTGTATTCGACAACCAAGCACAACCCGCA GGTATATCGTCAGAGCTATACCTGTGCTCCACTGTTCGCTTACGTTGTGA CATATATGTTGTGGCTCTCAGGAGTCAACAGTTGCCGATGGATCGATGAT TGGCATGAAGTCCATCCTTGCGGAGACGTCTGTGGAAGAAGGCAGCATCG TCGCCGCAGGAGCTGTCGTGACGCCTGGGACCGTTGTCGGCGCGGGAGAG GTACGTGTCTCTCGCGTGTTGCGTGTCGGTTCCTTGTGATGTGCGCGATG ACGGAGGCGTCGCTTCCCCAATCGGATGCTTTTATCGCCACGCGCGATGT TTTCATTTAAAAAACCTTGAATTGATTCCAACCCTCCGAACATACACACC TTCTTATCGCCGTGAGAGGTGCAGTCCAGGGGACTTGTCGGAGTGTGCTA CGGCGAAGTCTTACGCTAGATGTTCGATTCTCTCTGGATTTGTGCTGAAG CGCTATTCACTTAGACCCGTCGCCACCGCCGCCTGCGCCTCGCTTCCCAT GCTCCCGTAAGTGAAGGTCTGGGGCGGAAATCCCGCCGTGTACATGAGGA ATGTCACTCCAGAGGAAAAGGCGCAGCTCACCAAAAGTGCCGAGGGATAC GTTGCGCTAGCGGGGACGCACTCGGCCGAGATCTCGGCCTAGTTATTTTA GGTACCAGCCCTAAGCTGCAGCTGTGGAGGGAGACGAGAGGGCTCCCGTT TTGAAGGGAGACCTTTACCTTACCATAGTCGGTTGCGAGTTGAAAATTTG CGATGCAGTTAGCCGGGTGGAATTGTAGGGTGGGGCTGAGGAGGCGAGAT TGACTGGTCATGAGGCGGCGGTTTTTTACGAGAAGGTGGCTTTAATGACT ACATTTGGGGGGGGACCAGATCAAGTGCGCCATCGCAAGGAACTCTCGCA ACATTGATGAGGGCTCAATCGAAACTCTTCATGGAAGTATCGAGGTGAAG TGCAGTTCGGACGAGGACGCGCCCCGTGAGACTCAGCAGCCGTGACAACG GTGTAGAAGAGCCCTGGACGAAGGACCAAGCTCGTTTAGTATTTGGTCCT TGTTTTACTATCAATCTAGAACGATCCGTGGAACAATCGATCGCTTTGAG CACCTTACTTGCCTCTGTACTCCATGTCTCAAGATATTTACAGTAATACA CTATTAATCATTTTCTTTCCCAACAAAACTATATTTATGCACATACTATG GTAGTAATCTAAACATCCCAACCTATCAATAATTGTTGATCTTCCGAAAG TTGAAATTAATTCATGGTTTGCCTAGACGTAATAACCTTTCAACCCATTT GGCGTCCCCATATGATGAAGAATCACATATGATGATTTTGTTCTTAAATG TAGTAAAAATGTCCACATTCGAACCTGACGATAGTTAGTCCCCTGGACTA CACCTCTGATGGTACCAAGAAGGCGTGGATGTTCGAGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig20961:498..5087+

>mRNA_H-elongata_contig20961.6053.1 ID=mRNA_H-elongata_contig20961.6053.1|Name=mRNA_H-elongata_contig20961.6053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig20961:498..5087+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTTGGCGGCCGCAGCCCCTACGGTGGCGAAGGCCGCGTGGGTGGC
TCCAAGCGCAACCCTGATTGGCGAGGTTGACGTTTCCGGTGGGGCGTCTG
TATGGTACGGGGCCGTCCTCAGAGATGCCCTTGGCGGCCGCAGCCCCTAC
GGTGGCGAAGGCCGCGTGGGTGGCTCCAAGCGCAACCCTGATTGGCGAGG
TTGACGTTTCCGGTGGGGCGTCTGTATGGTACGGGGCCGTCCTCAGAGGT
GACGCTGGGTCGGTATCCATCGGTGCTGGCAGCAACGTGCAGGATGACGT
GATCCTTGGCTCCGGGAATGTCGCTATTGGCGAAGGAGTGACCATCGGCC
ATGGAGCGATCATCAAGGTGACGCTGGGTCGGTATCCATCGGTGCTGGCA
GCAACGTGCAGGATGACGTGATCCTTGGCTCCGGGAATGTCGCTATTGGC
GAAGGAGTGACCATCGGCCATGGAGCGATCATCAAGGAGTCAACAGTTGC
CGATGGATCGATGATTGGCATGAAGTCCATCCTTGCGGAGACGTCTGTGG
AAGAAGGCAGCATCGTCGCCGCAGGAGCTGTCGTGACGCCTGGGACCGTT
GTCGGCGCGGGAGAGGAGTCAACAGTTGCCGATGGATCGATGATTGGCAT
GAAGTCCATCCTTGCGGAGACGTCTGTGGAAGAAGGCAGCATCGTCGCCG
CAGGAGCTGTCGTGACGCCTGGGACCGTTGTCGGCGCGGGAGAGGTCTGG
GGCGGAAATCCCGCCGTGTACATGAGGAATGTCACTCCAGAGGAAAAGGC
GCAGCTCACCAAAAGTGCCGAGGGATACGTTGCGCTAGCGGGGACGCACT
CGGCCGAGATCTCGGCCTAGGTCTGGGGCGGAAATCCCGCCGTGTACATG
AGGAATGTCACTCCAGAGGAAAAGGCGCAGCTCACCAAAAGTGCCGAGGG
ATACGTTGCGCTAGCGGGGACGCACTCGGCCGAGATCTCGGCCTAG
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