mRNA_H-elongata_contig20961.6053.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: D8LGM4_ECTSI (Putative carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGM4_ECTSI) HSP 1 Score: 239 bits (610), Expect = 2.010e-73 Identity = 154/206 (74.76%), Postives = 170/206 (82.52%), Query Frame = 1
Query: 1 SAVSRTLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILGSGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEISA 618
++VSRTLG+CLRETGQALHRFGHQC DSTLI ETFSRHRQ+MPLAA+AP VAK AWVAPSATL+GEVDVSG ASVWYGAV+RGD G+V+IG GSNVQDD ILGSG+V++G GVT XXXXXXXXXXXXXXXXXXXXXXXXXXX VWGGNPAVYMR+VTP EKAQLTKSAEGYVALAG+H+ I+A
Sbjct: 2 TSVSRTLGRCLRETGQALHRFGHQCQDSTLIMETFSRHRQLMPLAASAPAVAKDAWVAPSATLVGEVDVSGEASVWYGAVVRGDTGAVAIGKGSNVQDDAILGSGDVSVGAGVTIGHGAIIKSSTVADGSMVXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGAGQVWGGNPAVYMRDVTPAEKAQLTKSAEGYVALAGSHATSIAA 207
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A835Z4X6_9STRA (Putative carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X6_9STRA) HSP 1 Score: 144 bits (364), Expect = 5.330e-37 Identity = 86/206 (41.75%), Postives = 110/206 (53.40%), Query Frame = 1
Query: 1 SAVSRTLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILGSGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEISA 618
+A++R +GK +RETGQAL G D + QE F+RHR MPL A P +A AWVAP+A+++G+V ++ ASVWYGAV+RGDA V++GA SNVQDD +L SG A+GE VT +W GNPAV+ R +TP+EKA L KSA Y ALA H AE A
Sbjct: 2 AALTRMIGKMVRETGQALEVLGVIAGDDKIHQEYFTRHRHTMPLGANKPALAPGAWVAPTASVVGDVALATDASVWYGAVVRGDAQRVTVGARSNVQDDAVL-SGGAALGEDVTVGHGAIIAGSTVGDRCLIGMKAVLDGADVASDAIIAANAVVRPGSKVLSGQMWAGNPAVFRRALTPDEKAYLAKSAASYAALAAAHRAEDDA 206
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A067C675_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C675_SAPPC) HSP 1 Score: 114 bits (286), Expect = 1.180e-25 Identity = 96/212 (45.28%), Postives = 124/212 (58.49%), Query Frame = 1
Query: 7 VSRTLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILGSGNV---------AIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEI 612
V+ LG+C+RETGQA+ R G + S +E FSRHRQIM L P+VA +WVAP+A++IG+V++ ASVWYG V+RGD VSIG +N+QD ++ + + +IG VT XXXXXXXXXXXXXXXXXXXXX +W G+PA Y+R+VT +E A LT A+ Y LA THS E
Sbjct: 5 VTFELGRCVRETGQAMDRLGLRVLGSNEAREKFSRHRQIMNLYDKVPSVAYDSWVAPNASVIGDVEICNDASVWYGVVIRGDLNKVSIGNRTNIQDRTVIHTSSTTTPGLAPGASIGNDVTVGHGCILYSCTIENNCLIGMGSIVLDGAXXXXXXXXXXXXXXXXXXXXXSGQLWAGSPAQYVRDVTEDEIADLTNQAKEYKKLADTHSDEF 216
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A7S1U829_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U829_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.770e-25 Identity = 119/228 (52.19%), Postives = 147/228 (64.47%), Query Frame = 1
Query: 16 TLGKCLRETGQALHRFGHQCTDSTLIQETF----SRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVIL----GSGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAEISA*LF*VPALSCSCGGRREGS 675
T+G+ LRETGQA+ R G D ++ TF +RHRQ+M L P+++ WVAPSA+ IG+V VS GASVWYG VLRGDA + +G GSN+QD + G+G V IG VT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +W GNPA ++R++TP+E + K AE Y L+G H E + V L S G + +GS
Sbjct: 7 TIGRALRETGQAMDRLGLAAMD---VENTFLVPLNRHRQLMNLEGKVPSLSGDVWVAPSASAIGDVAVSAGASVWYGTVLRGDAAPIVVGPGSNIQDLTSITTSEGAG-VTIGSKVTVGHKAMLHGCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-LWAGNPATHVRDLTPDEVQAMVKQAEAYATLSGKHRTEFAD----VADLMDSEGAQAKGS 225
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A6J1GIE2_CUCMO (gamma carbonic anhydrase 1, mitochondrial-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1GIE2_CUCMO) HSP 1 Score: 113 bits (283), Expect = 6.440e-25 Identity = 91/208 (43.75%), Postives = 119/208 (57.21%), Query Frame = 1
Query: 16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
T+G +RETGQA+ R G + QE SRHR +M + AP V K A+VAPSA++IG+V V G+S+WYG VLRGDA S+S+G+G+N+QD+ ++ SG V IG+ VT XXXXXXXXXXXXXXX VWGGNPA ++R +T EE+A +++SA Y LA H AE
Sbjct: 10 TVGFWIRETGQAIDRLGCRLQGRYFFQEQLSRHRTLMNVFDKAPVVDKDAFVAPSASIIGDVQVGSGSSIWYGCVLRGDANSISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFIGTGAMLLDGSIVXXXXXXXXXXXXXXXTKIPSGEVWGGNPAKFLRKLTDEERAFISQSATNYSDLAQVHVAE 217
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A7S2S8M3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8M3_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.020e-24 Identity = 91/198 (45.96%), Postives = 116/198 (58.59%), Query Frame = 1
Query: 19 LGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG---SGNVAIGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTH 600
LG+ LRETGQAL+ GH D ++ F+RHR +M L AP VA +VAP A+++G+V ++ +S+WY AVLRGD+ +V+IG GSNVQD+V++ S IG VT XXXXXXXXXXXXXXXXXX +WGG PAVYMR++ E +QLTK A Y ALA H
Sbjct: 17 LGRALRETGQALNVLGHMAGDDFSFRQPFTRHRTLMSLFDKAPAVASQVFVAPCASVVGDVALATKSSIWYSAVLRGDSSAVTIGEGSNVQDNVVIKTTKSSPAHIGSDVTIGHNAVLTGCTVGNRVLVGMGAVVSEGVEXXXXXXXXXXXXXXXXXXVPSKQLWGGAPAVYMRDLKDAELSQLTKQATEYSALADVH 214
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A7N0RBJ5_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RBJ5_KALFE) HSP 1 Score: 112 bits (281), Expect = 1.300e-24 Identity = 76/208 (36.54%), Postives = 104/208 (50.00%), Query Frame = 1
Query: 16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
++G +RETGQAL R G + + QE SRHR +M + AP V K A+VAPSA+++G+V V G+S+WYG V+RGD SVSIG+G+N+QD+ ++ SG V IG+ VT VWGGNPA ++R +T EE A +T+SA Y LA H+AE
Sbjct: 10 SVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRALMNIFDKAPVVDKDAFVAPSASIVGDVQVGRGSSIWYGCVVRGDVNSVSIGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFIGMGATLLDGVFVEKHSMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTEEEMAFITQSATNYANLAQVHAAE 217
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A8B8MU54_9MYRT (gamma carbonic anhydrase 1, mitochondrial n=36 Tax=Mesangiospermae TaxID=1437183 RepID=A0A8B8MU54_9MYRT) HSP 1 Score: 112 bits (280), Expect = 1.870e-24 Identity = 76/208 (36.54%), Postives = 104/208 (50.00%), Query Frame = 1
Query: 16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
T+G +RETGQAL R G + + QE SRHR +M + AP V K A+VAPSA++IG+V V G+S+WYG VLRGD S+S+G+G+N+QD+ ++ SG V IG+ VT VWGGNPA ++R +T EE A +++SA Y LA H+AE
Sbjct: 10 TVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNSRIASGEVWGGNPAKFLRKLTDEEVAFISQSATNYSNLAQVHAAE 217
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A8J5BTF2_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5BTF2_ZINOF) HSP 1 Score: 111 bits (278), Expect = 1.990e-24 Identity = 75/208 (36.06%), Postives = 103/208 (49.52%), Query Frame = 1
Query: 16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
T+G +RETGQA+ R G + + L QE SRHR +M L P+V K A+VAPSA++IG+V V G+S+WYG VL+GD S+ +G+G+N+QD+ ++ SG V IG+ VT VWGGNPA +MR +T EE A + +SA Y LA H+AE
Sbjct: 10 TVGFWIRETGQAIDRLGCRLQGNYLFQEQLSRHRTLMNLFDKVPSVHKDAFVAPSASIIGDVQVGQGSSIWYGCVLQGDVNSIHVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGTGAVLLDGVIVEKHGMVAAGSLVRQNTRVPCGEVWGGNPAKFMRKLTEEEMAFIVQSAANYANLAQVHAAE 217
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Match: A0A5N5H4M1_9ROSA (Gamma carbonic anhydrase 1 n=2 Tax=Maleae TaxID=721813 RepID=A0A5N5H4M1_9ROSA) HSP 1 Score: 112 bits (279), Expect = 2.310e-24 Identity = 76/208 (36.54%), Postives = 105/208 (50.48%), Query Frame = 1
Query: 16 TLGKCLRETGQALHRFGHQCTDSTLIQETFSRHRQIMPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGAGSNVQDDVILG------SGNVA---IGEGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VWGGNPAVYMRNVTPEEKAQLTKSAEGYVALAGTHSAE 609
T+G +RETGQA+ R G + + QE SRHR +M + AP V K A+VAPSA++IG+V V G+S+WYG VLRGDA SVSIG+G+N+QD+ ++ +G V IG+ VT VWGGNPA ++R +T +E A +++SA Y LA H+AE
Sbjct: 10 TVGFWIRETGQAIDRLGSRLQGNYYFQEQLSRHRTLMNVFDKAPVVDKEAFVAPSASIIGQVQVGRGSSIWYGCVLRGDANSVSIGSGTNIQDNSLVHVAKSNLTGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGVAATLLDGVYVEKHAMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTEDEMAFISQSALNYSNLAQVHAAE 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20961.6053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20961.6053.1 >prot_H-elongata_contig20961.6053.1 ID=prot_H-elongata_contig20961.6053.1|Name=mRNA_H-elongata_contig20961.6053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp MPLAAAAPTVAKAAWVAPSATLIGEVDVSGGASVWYGAVLRGDAGSVSIGback to top mRNA from alignment at H-elongata_contig20961:498..5087+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20961.6053.1 ID=mRNA_H-elongata_contig20961.6053.1|Name=mRNA_H-elongata_contig20961.6053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4590bp|location=Sequence derived from alignment at H-elongata_contig20961:498..5087+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20961:498..5087+ >mRNA_H-elongata_contig20961.6053.1 ID=mRNA_H-elongata_contig20961.6053.1|Name=mRNA_H-elongata_contig20961.6053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig20961:498..5087+ (Himanthalia elongata Himel1 dioecious)back to top |