mRNA_H-elongata_contig209576.6052.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209576.6052.1
Unique NamemRNA_H-elongata_contig209576.6052.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209576.6052.1 vs. uniprot
Match: A0A6H5JSK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.810e-32
Identity = 48/65 (73.85%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   16 SVYERRKACEKGPCGHLVPLEAQNCINECISPDCYRKTYAEPLEDGEINTQLSKNFNLCSRRDMK 210
            SVY+R++ CE   CGHLVPLEA+NC++EC+SPDCYRKTYAEPLEDGEIN QLSKNF  C++RD+K
Sbjct:   33 SVYDRKRECETETCGHLVPLEAKNCVHECVSPDCYRKTYAEPLEDGEINLQLSKNFMACAQRDIK 97
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BLAST of mRNA_H-elongata_contig209576.6052.1 vs. uniprot
Match: A0A6S9GZX5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GZX5_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 1.440e-15
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    4 QADRSVYERRKACEKGPCGHLVPLEAQNCINECISPDCYRKTYA-EPLEDGEINTQLSKNFNLCSR 198
            +AD++   ++  CE+  CGH++  EAQNCIN+CIS +CY + YA EPLEDGE++    K F  C R
Sbjct:   43 KADKNFRIKKGDCERVACGHMIVDEAQNCINKCISAECYEEVYAHEPLEDGEVDASRYKRFQACYR 108
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BLAST of mRNA_H-elongata_contig209576.6052.1 vs. uniprot
Match: A0A7S1VMC4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMC4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.140e-14
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   10 DRSVYERRKACEKGPCGHLVPLEAQNCINECISPDCYRKTYAE-PLEDGEINTQLSKNFNLCSRRDMK 210
            D  V  R   CE+  C H++P EA NCIN+C+S  C+ + YA  PLEDGEI+ + ++ F+ C++ + K
Sbjct:   36 DMEVKARTVFCEREDCAHIIPEEAMNCINKCVSEQCFTEIYAAIPLEDGEIDLRRAREFDKCAKYEEK 103
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BLAST of mRNA_H-elongata_contig209576.6052.1 vs. uniprot
Match: A0A0G4GQ10_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ10_9ALVE)

HSP 1 Score: 53.5 bits (127), Expect = 3.110e-7
Identity = 20/63 (31.75%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   28 RRKACEKGPCGHLVPLEAQNCINECISPDCYRKTYAE-PLEDGEINTQLSKNFNLCSRRDMKI 213
            RR  C    C  +   E  +C+++C+SP CY+  +AE PLE GE++ +   +F  C ++++ +
Sbjct:   40 RRNKCVMNECSDIPEEENDDCVDKCLSPQCYQDIFAENPLEPGEVDRKRRNDFMNCVKKEVDV 102
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BLAST of mRNA_H-elongata_contig209576.6052.1 vs. uniprot
Match: A0A7S3FNZ8_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FNZ8_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 4.600e-7
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:   10 DRSVYERRKACEKGP-------CGHLVPLEAQNCINECISPDCYRKTYAE-PLEDGEINTQLSKNFNLCSRRDMK 210
            D+  Y  R+ C K         C     +  +NC+ EC+SP+CY + YA+ PLE+GE++T   + F +C R   K
Sbjct:   82 DKEYYMLREECSKSEAVLGSANCTSSDVMR-ENCVLECVSPECYAEVYAQDPLEEGELDTTRGRLFRVCVRNAKK 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209576.6052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSK8_9PHAE1.810e-3273.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S9GZX5_HETAK1.440e-1548.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1VMC4_9STRA2.140e-1442.65Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A0G4GQ10_9ALVE3.110e-731.75Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S3FNZ8_9CHLO4.600e-734.67Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209576contigH-elongata_contig209576:150..720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.1465092-CDS-H-elongata_contig209576:149..2901622930171.1465092-CDS-H-elongata_contig209576:149..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209576 150..290 +
1691679307.7034726-CDS-H-elongata_contig209576:149..2901691679307.7034726-CDS-H-elongata_contig209576:149..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209576 150..290 +
1622930171.161831-CDS-H-elongata_contig209576:630..7201622930171.161831-CDS-H-elongata_contig209576:630..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209576 631..720 +
1691679307.7195883-CDS-H-elongata_contig209576:630..7201691679307.7195883-CDS-H-elongata_contig209576:630..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209576 631..720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209576.6052.1prot_H-elongata_contig209576.6052.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209576 150..720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209576.6052.1

>prot_H-elongata_contig209576.6052.1 ID=prot_H-elongata_contig209576.6052.1|Name=mRNA_H-elongata_contig209576.6052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
NQADRSVYERRKACEKGPCGHLVPLEAQNCINECISPDCYRKTYAEPLED
GEINTQLSKNFNLCSRRDMKILNQVL*
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mRNA from alignment at H-elongata_contig209576:150..720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209576.6052.1 ID=mRNA_H-elongata_contig209576.6052.1|Name=mRNA_H-elongata_contig209576.6052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=571bp|location=Sequence derived from alignment at H-elongata_contig209576:150..720+ (Himanthalia elongata Himel1 dioecious)
AATCAGGCTGATCGCTCTGTCTATGAGCGCCGGAAGGCGTGCGAGAAGGG
ACCGTGCGGACACCTCGTCCCTCTCGAAGCCCAGAATTGCATAAATGAGT
GCATCTCTCCCGACTGTTACCGAAAAACGTACGCGGAGCCGGTGAGGAAC
GGGCGCCTACGTCCCATCCCACACCACCTGTCGGTTCATAATTGGGGTGG
TGATTCACTACTAACTTGTGGTCTCGAGATCAACTTGCTGTCGAGAAGGA
ATGCCCGCCTAAGGAGGCAGGCGGTGACGATGAACAGTAGGAGACCGTGT
TATCCACACATAGTGTTTTTAGTTTATGTTCGTGAAGATATCCATCGTTC
AAGAGTTCGCGCGCGCACACACGCCGTGAAAGTTACGGGACATTTTCTTC
GAAGTATTGTCTCCTCCGATGGCACATTGCTCGAAATCCCTTCCGCCATT
TTTTCGCTGCCGTATCGGTACTCTTGAACAGCTCGAGGACGGGGAGATCA
ACACGCAGCTCAGCAAGAACTTCAATTTGTGCTCGAGGAGAGACATGAAA
ATCTTGAATCAGGTATTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig209576:150..720+

>mRNA_H-elongata_contig209576.6052.1 ID=mRNA_H-elongata_contig209576.6052.1|Name=mRNA_H-elongata_contig209576.6052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig209576:150..720+ (Himanthalia elongata Himel1 dioecious)
AATCAGGCTGATCGCTCTGTCTATGAGCGCCGGAAGGCGTGCGAGAAGGG
ACCGTGCGGACACCTCGTCCCTCTCGAAGCCCAGAATTGCATAAATGAGT
GCATCTCTCCCGACTGTTACCGAAAAACGTACGCGGAGCCGAATCAGGCT
GATCGCTCTGTCTATGAGCGCCGGAAGGCGTGCGAGAAGGGACCGTGCGG
ACACCTCGTCCCTCTCGAAGCCCAGAATTGCATAAATGAGTGCATCTCTC
CCGACTGTTACCGAAAAACGTACGCGGAGCCGCTCGAGGACGGGGAGATC
AACACGCAGCTCAGCAAGAACTTCAATTTGTGCTCGAGGAGAGACATGAA
AATCTTGAATCAGGTATTGTAGCTCGAGGACGGGGAGATCAACACGCAGC
TCAGCAAGAACTTCAATTTGTGCTCGAGGAGAGACATGAAAATCTTGAAT
CAGGTATTGTAG
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