mRNA_H-elongata_contig209550.6051.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209550.6051.1
Unique NamemRNA_H-elongata_contig209550.6051.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209550.6051.1 vs. uniprot
Match: D7G1J4_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.100e-17
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 TGAEHWIASLLVCVTGSALLLAFSLTACSDPGIVYRPAER 120
            TGAE+W+AS +VC+TGSALLLAFS+TACSDPGIVYRPAER
Sbjct:    4 TGAEYWVASFIVCITGSALLLAFSMTACSDPGIVYRPAER 43
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BLAST of mRNA_H-elongata_contig209550.6051.1 vs. uniprot
Match: A0A6H5KUF9_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.860e-16
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 TGAEHWIASLLVCVTGSALLLAFSLTACSDPGIVYRPAER 120
            TGA++W+AS +VC+TGSALLLAFS+TACSDPGIVYRPAER
Sbjct:   76 TGAKYWVASFIVCITGSALLLAFSMTACSDPGIVYRPAER 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209550.6051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1J4_ECTSI4.100e-1785.00Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KUF9_9PHAE6.860e-1682.50Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209550contigH-elongata_contig209550:209..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7G1J4
KEGG koko:K16675,ko:K18932,ko:K20032
KEGG TC9.B.37.1,9.B.37.3
KEGG Pathwayko04391,map04391
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-07_001260.1
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.0595825-CDS-H-elongata_contig209550:208..3281622930171.0595825-CDS-H-elongata_contig209550:208..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209550 209..328 -
1691679307.6862032-CDS-H-elongata_contig209550:208..3281691679307.6862032-CDS-H-elongata_contig209550:208..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209550 209..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209550.6051.1prot_H-elongata_contig209550.6051.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209550 209..328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209550.6051.1

>prot_H-elongata_contig209550.6051.1 ID=prot_H-elongata_contig209550.6051.1|Name=mRNA_H-elongata_contig209550.6051.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
TGAEHWIASLLVCVTGSALLLAFSLTACSDPGIVYRPAER
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mRNA from alignment at H-elongata_contig209550:209..328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209550.6051.1 ID=mRNA_H-elongata_contig209550.6051.1|Name=mRNA_H-elongata_contig209550.6051.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig209550:209..328- (Himanthalia elongata Himel1 dioecious)
ACCGGCGCGGAACACTGGATAGCCAGCTTGCTGGTCTGCGTTACCGGGTC
GGCCCTGCTCCTAGCGTTCTCCCTCACGGCCTGCAGCGATCCGGGGATCG
TCTACCGGCCCGCGGAACGA
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Coding sequence (CDS) from alignment at H-elongata_contig209550:209..328-

>mRNA_H-elongata_contig209550.6051.1 ID=mRNA_H-elongata_contig209550.6051.1|Name=mRNA_H-elongata_contig209550.6051.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig209550:209..328- (Himanthalia elongata Himel1 dioecious)
ACCGGCGCGGAACACTGGATAGCCAGCTTGCTGGTCTGCGTTACCGGGTC
GGCCCTGCTCCTAGCGTTCTCCCTCACGGCCTGCAGCGATCCGGGGATCG
TCTACCGGCCCGCGGAACGAACCGGCGCGGAACACTGGATAGCCAGCTTG
CTGGTCTGCGTTACCGGGTCGGCCCTGCTCCTAGCGTTCTCCCTCACGGC
CTGCAGCGATCCGGGGATCGTCTACCGGCCCGCGGAACGA
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