mRNA_H-elongata_contig209546.6050.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209546.6050.1
Unique NamemRNA_H-elongata_contig209546.6050.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209546.6050.1 vs. uniprot
Match: A0A6H5JNK1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.540e-25
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:   25 QALTNIRLSCCGGGTLIPVVKRVHHAETLDMLRDLHVVSAIDLRRVDNFIHRAIMGEVSSCQ 210
            +ALTNIRLSCCGGGTLIP+VK +H  ETLDMLRDLH  SA+DLRR+DNFI RA MGEVSSCQ
Sbjct:  130 EALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHDASAVDLRRIDNFITRATMGEVSSCQ 191
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BLAST of mRNA_H-elongata_contig209546.6050.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.350e-24
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   25 QALTNIRLSCCGGGTLIPVVKRVHHAETLDMLRDLHVVSAIDLRRVDNFIHRAIMGEVSSCQ 210
            +ALTNIRLSCCGGGTLIP+VK +H  ETL MLRDLH  SA+DLRR+DNFI RA MGEVSSCQ
Sbjct:  561 EALTNIRLSCCGGGTLIPMVKGIHQVETLHMLRDLHDASAVDLRRIDNFITRATMGEVSSCQ 622
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BLAST of mRNA_H-elongata_contig209546.6050.1 vs. uniprot
Match: B8CDY7_THAPS (Bromo domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY7_THAPS)

HSP 1 Score: 63.2 bits (152), Expect = 5.820e-10
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    4 RRSCTNHQALTNIRLSCCGGGTLIPVVKRVHHAETLDMLRDLHVVSAIDLRRVDNFIHRAIMGEVSSC 207
            R+S    +ALTN+R++CCGG  ++P +  VH  ETL +LR  H V    +R V++FI RA  G +SSC
Sbjct: 1050 RQSRFASEALTNLRVACCGGCQILPSISNVHWNETLTLLRQRHKVDDTKVRVVNDFIDRAQSGMLSSC 1117
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BLAST of mRNA_H-elongata_contig209546.6050.1 vs. uniprot
Match: K0TAG8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAG8_THAOC)

HSP 1 Score: 60.8 bits (146), Expect = 3.790e-9
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   25 QALTNIRLSCCGGGTLIPVVKRVHHAETLDMLRDLHVVSAIDLRRVDNFIHRAIMGEVSSCQ 210
            QALTN+R+S CGG  ++P +  V+  ETL MLR+ H ++   + + ++FIHRA  G++S C+
Sbjct:  949 QALTNLRISSCGGIRILPTITNVNWDETLSMLRERHGLNENRIAKANDFIHRASSGDLSVCR 1010
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209546.6050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JNK1_9PHAE1.540e-2580.65SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FP67_ECTSI1.350e-2479.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8CDY7_THAPS5.820e-1045.59Bromo domain-containing protein n=1 Tax=Thalassios... [more]
K0TAG8_THAOC3.790e-943.55Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209546contigH-elongata_contig209546:574..783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5.9e-21
Seed eggNOG ortholog2880.D7FP67
KEGG koko:K15505
GOsGO:0005575,GO:0005911,GO:0009506,GO:0030054,GO:0055044
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.0064056-CDS-H-elongata_contig209546:573..7831622930171.0064056-CDS-H-elongata_contig209546:573..783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209546 574..783 +
1691679307.6754844-CDS-H-elongata_contig209546:573..7831691679307.6754844-CDS-H-elongata_contig209546:573..783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209546 574..783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209546.6050.1prot_H-elongata_contig209546.6050.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209546 574..783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209546.6050.1

>prot_H-elongata_contig209546.6050.1 ID=prot_H-elongata_contig209546.6050.1|Name=mRNA_H-elongata_contig209546.6050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MRRSCTNHQALTNIRLSCCGGGTLIPVVKRVHHAETLDMLRDLHVVSAID
LRRVDNFIHRAIMGEVSSCQ
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mRNA from alignment at H-elongata_contig209546:574..783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209546.6050.1 ID=mRNA_H-elongata_contig209546.6050.1|Name=mRNA_H-elongata_contig209546.6050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig209546:574..783+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCGGTCGTGCACCAATCATCAGGCGTTGACCAACATCCGCCTGTC
CTGCTGCGGCGGAGGCACTCTCATCCCCGTTGTGAAACGCGTCCACCACG
CGGAAACCCTGGACATGCTCCGGGATCTGCACGTCGTGAGCGCGATCGAC
CTGCGTCGCGTGGACAATTTTATCCACAGGGCCATCATGGGGGAGGTGTC
GAGCTGTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig209546:574..783+

>mRNA_H-elongata_contig209546.6050.1 ID=mRNA_H-elongata_contig209546.6050.1|Name=mRNA_H-elongata_contig209546.6050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig209546:574..783+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCGGTCGTGCACCAATCATCAGGCGTTGACCAACATCCGCCTGTC
CTGCTGCGGCGGAGGCACTCTCATCCCCGTTGTGAAACGCGTCCACCACG
CGGAAACCCTGGACATGCTCCGGGATCTGCACGTCGTGAGCGCGATCGAC
CTGCGTCGCGTGGACAATTTTATCCACAGGGCCATCATGGGGGAGGTGTC
GAGCTGTCAGATGCGGCGGTCGTGCACCAATCATCAGGCGTTGACCAACA
TCCGCCTGTCCTGCTGCGGCGGAGGCACTCTCATCCCCGTTGTGAAACGC
GTCCACCACGCGGAAACCCTGGACATGCTCCGGGATCTGCACGTCGTGAG
CGCGATCGACCTGCGTCGCGTGGACAATTTTATCCACAGGGCCATCATGG
GGGAGGTGTCGAGCTGTCAG
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