mRNA_H-elongata_contig20954.6049.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20954.6049.1
Unique NamemRNA_H-elongata_contig20954.6049.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A6H5KT91_9PHAE (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT91_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 4.420e-102
Identity = 164/200 (82.00%), Postives = 177/200 (88.50%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLPDKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LGVYLNAGRETAVASTKAFTTQVTVLGL+ALWFRQVRE E  +GEA++   S GLPDKSKLFEALQRLPISFGMAM VRQQCK  A  L +K H+FVLGKGYGEPVAYEGALKLKEMAY+HAEGYSG ALKHGPFALIEG E   GATPIIL+ILDDDHA QMRTC EEVKARGA+L VITDNP+LA+GLD +PIVIP+N
Sbjct:  544 LGVYLNAGRETAVASTKAFTTQVTVLGLVALWFRQVREAELASGEATE---SVGLPDKSKLFEALQRLPISFGMAMRVRQQCKLVAEKLADKKHIFVLGKGYGEPVAYEGALKLKEMAYIHAEGYSGGALKHGPFALIEGAEGDNGATPIILIILDDDHAHQMRTCGEEVKARGAQLTVITDNPRLADGLDPNPIVIPNN 740
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A482SH71_9ARCH (Glutamine--fructose-6-phosphate transaminase (isomerizing) (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH71_9ARCH)

HSP 1 Score: 279 bits (713), Expect = 6.700e-92
Identity = 142/200 (71.00%), Postives = 165/200 (82.50%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLPDKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LGVYLNAGRE AVASTKAFT+QVTVL LI+LWFRQ +E +    E         LP K +L ++LQRLPISFGMAM +R+QCK+ AT L  K++LFVLGKGYGEP+A EGALK+KEM+Y+HAEGYSG ALKHGPFALIEGPE   G TP+ILLILDDDHA  MRT AEEVKARGA++IVITDNPKLA+G+DS P+VIP+N
Sbjct:   45 LGVYLNAGRENAVASTKAFTSQVTVLTLISLWFRQHKEEQEHLTE---------LPLKKELLDSLQRLPISFGMAMRLREQCKKVATQLQQKSNLFVLGKGYGEPIALEGALKIKEMSYIHAEGYSGGALKHGPFALIEGPEGRDGRTPVILLILDDDHANHMRTAAEEVKARGAQVIVITDNPKLAQGIDSDPLVIPNN 235
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A7S1U5M0_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5M0_9STRA)

HSP 1 Score: 258 bits (660), Expect = 5.630e-83
Identity = 134/200 (67.00%), Postives = 156/200 (78.00%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLPDKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LG+YLNAGRE AVASTKAFT+QVT + L+ALWFRQ RE    AGE S       L DKS L  ALQRLPISFGMA+  R QCKE A  L++K  LF+LGKG+ EP+AYEGALK+KE++Y++A+GYSG ALKHGPFALIEGP  P GATPII++ILDD+HA QM T A EVKARGAE+ VITDN KL   + S P+VIPSN
Sbjct:  146 LGIYLNAGRENAVASTKAFTSQVTAMALLALWFRQQRED---AGEES-------LADKSDLLIALQRLPISFGMALRTRDQCKEVAKKLVDKQSLFILGKGFAEPIAYEGALKIKEISYLNAQGYSGGALKHGPFALIEGPSGPNGATPIIMIILDDEHAAQMLTAAHEVKARGAEITVITDNAKLVREVCSDPVVIPSN 335
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A4D9CTV3_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTV3_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.250e-81
Identity = 141/201 (70.15%), Postives = 159/201 (79.10%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLPDK-SKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LGVYLNAGRE++VASTKAFTTQVTVL LI  WFRQVRE    AGE +       LP + ++L EALQR+PI FGMA   R+QC E A  L +K H+F+LGKGYGEP+A EGALKLKEMAY+HAEGYSG ALKHGPFALIEG E   GATPII LILDD+HA  MRT AEEVKARGA+LIVITDNPKLA GL   PI++P+N
Sbjct:  432 LGVYLNAGRESSVASTKAFTTQVTVLTLITAWFRQVRE---EAGEEA-------LPGRVTELLEALQRMPIGFGMARRTREQCAELAVRLKDKEHIFLLGKGYGEPIALEGALKLKEMAYIHAEGYSGGALKHGPFALIEGKEGKFGATPIICLILDDEHAQHMRTAAEEVKARGADLIVITDNPKLARGLVPDPIIVPNN 622
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BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A7S0B1M1_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B1M1_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.900e-79
Identity = 135/203 (66.50%), Postives = 150/203 (73.89%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVR---EGERRAGEASDPMDSSGLPDKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LGVY NAGRE AVASTKAFTTQVT L LIALWFRQ R   EG+        P+ +  L    +L EAL RLPI+FGMA+  R QCK+ A  L +K H FVLGKGYGEPVA EGALK+KEM Y+HAEGYSG ALKHGPFALIE      GATPII+LI DD HA  MRT AEEVKARGAE+I+ITD   LAEGLD  PI++PSN
Sbjct:   90 LGVYCNAGRENAVASTKAFTTQVTALALIALWFRQTRDLIEGK--------PVSTEAL----RLKEALMRLPITFGMAIKSRTQCKQIAEHLKDKEHCFVLGKGYGEPVAMEGALKIKEMCYLHAEGYSGGALKHGPFALIEDANGKFGATPIIMLIFDDQHAHHMRTAAEEVKARGAEVIIITDKASLAEGLDDDPILVPSN 280
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BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: K0TN16_THAOC (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TN16_THAOC)

HSP 1 Score: 251 bits (640), Expect = 1.760e-78
Identity = 135/202 (66.83%), Postives = 156/202 (77.23%), Query Frame = 1 
Query:   16 NLGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLPDKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPE-APGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            NLGVY NAGRE AVASTKAFTTQVTVL LIALWFR++R+  +  GE +  ++   L       E+L RLPI  GMA+  R+QCK  A  L  K H F+LGKGYGEPVAYEGALK+KEM Y+HAEGYSG ALKHGPFALIE  E    GATPII+LILDD+HA  MRT AEEVKARGA++IVITD  +LAEG+DS+P+VIPSN
Sbjct:  224 NLGVYCNAGRENAVASTKAFTTQVTVLALIALWFRELRD--KVQGETNPSVEGELLK------ESLMRLPICCGMALRNREQCKAVAERLDGKDHCFILGKGYGEPVAYEGALKIKEMCYLHAEGYSGGALKHGPFALIENDENGKLGATPIIMLILDDNHANHMRTAAEEVKARGADVIVITDKEELAEGIDSNPVVIPSN 417
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A7S0GCA2_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCA2_9STRA)

HSP 1 Score: 244 bits (622), Expect = 3.050e-77
Identity = 133/205 (64.88%), Postives = 148/205 (72.20%), Query Frame = 1 
Query:   16 NLGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVR---EGERRAGEASDPMDSSGLPDKSKLFEALQRLPISFGMAMG-VRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            NLGVYLNAGRE AVASTKAFTTQVTVL L+ALWFRQ R   EG +     +D           +L E+L RLPI+FGM +   R QCK+ A  L +K H FVLGKGYGEPVA EGALK+KEM Y+HAEGYSG ALKHGPFALIEG     G+TPII+LI DD HA  MR  AEEVKARGAELI+ITD   L   LD +PIVIPSN
Sbjct:  105 NLGVYLNAGRENAVASTKAFTTQVTVLALVALWFRQTRDLIEGRKMKSIEAD-----------RLKESLMRLPITFGMIVNSTRPQCKKIAERLEHKEHCFVLGKGYGEPVAMEGALKIKEMCYLHAEGYSGGALKHGPFALIEGKNGKFGSTPIIMLIFDDHHANHMRNAAEEVKARGAELIIITDKESLVSDLDENPIVIPSN 298
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A7S2MLC9_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLC9_9STRA)

HSP 1 Score: 254 bits (648), Expect = 5.240e-77
Identity = 135/202 (66.83%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLP--DKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LGVY NAGRE AVASTKAFTTQ+TVL LIALWFRQ R          D M     P  + ++L EAL RLPISFGM M  R+QC E A  L  K H FVLGKGYGEPVA EGALK+KEM Y+HAEGYSG ALKHGPFALIE  +   GATPI+L+ILDD+HA  MRT AEEVKARGA+LI+ITD P LA  LD +PI+IPSN
Sbjct:  497 LGVYCNAGRENAVASTKAFTTQITVLALIALWFRQTR----------DKMQGLKRPSIEATRLKEALMRLPISFGMTMKTREQCLEIAKRLREKEHCFVLGKGYGEPVAMEGALKIKEMCYLHAEGYSGGALKHGPFALIEDDKGMFGATPIVLIILDDNHAAHMRTAAEEVKARGADLIIITDKPSLAADLDDNPIIIPSN 688
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A7S2R8P1_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8P1_9STRA)

HSP 1 Score: 252 bits (644), Expect = 5.560e-77
Identity = 132/200 (66.00%), Postives = 151/200 (75.50%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLPDKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LGVY NAGRE AVASTKAFTTQVTVL L+  WFRQ+R+   +    S+    S  P    L EAL RLPISFGMA  +R +CK+ A  + +K HLF+LGKGY EP+AYEGALK+KE  Y+HAEGYSG ALKHGPFALIEGP    GATPII LILDD++A QMR  AEEVKARGAE  +ITDNPKLA+GLD  P+VIP N
Sbjct:  429 LGVYCNAGRENAVASTKAFTTQVTVLALVTCWFRQMRD---QLSHNSNYCRESTQP----LMEALARLPISFGMANRLRPKCKQLAERVKDKEHLFILGKGYAEPIAYEGALKIKECTYLHAEGYSGGALKHGPFALIEGPAGKRGATPIICLILDDEYAQQMRIVAEEVKARGAECFIITDNPKLADGLDPDPLVIPRN 621
[Close]
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Match: A0A7S1YXA5_TRICV (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXA5_TRICV)

HSP 1 Score: 243 bits (620), Expect = 7.770e-77
Identity = 133/202 (65.84%), Postives = 146/202 (72.28%), Query Frame = 1 
Query:   19 LGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAGEASDPMDSSGLPDKS--KLFEALQRLPISFGMAMGVRQQCKEKATALMNKTHLFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAPGGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSPIVIPSN 618
            LGVY +AGRE AVASTKAFTTQVT L LIALWFRQ R          D ++ +  P +   +L +AL RLPI+FGMA   R QCK  A  L    H FVLGKGYGEPVA EGALK+KEM Y+HAEGYSG ALKHGPFALIE      GATPIILLILDD HA  MRT AEEVKARGA++IVITD   LAEGLD  PI+IPSN
Sbjct:  115 LGVYCHAGRENAVASTKAFTTQVTSLALIALWFRQAR----------DMLNGNKRPSQEAVRLKDALMRLPITFGMATQSRDQCKRIAEVLNAGEHCFVLGKGYGEPVAMEGALKIKEMCYLHAEGYSGGALKHGPFALIEDKNGKFGATPIILLILDDSHAHHMRTAAEEVKARGAKVIVITDKESLAEGLDDDPIIIPSN 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20954.6049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT91_9PHAE4.420e-10282.00Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A482SH71_9ARCH6.700e-9271.00Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S1U5M0_9STRA5.630e-8367.00Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A4D9CTV3_9STRA1.250e-8170.15Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S0B1M1_9STRA1.900e-7966.50Glutamine--fructose-6-phosphate transaminase (isom... [more]
K0TN16_THAOC1.760e-7866.83Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S0GCA2_9STRA3.050e-7764.88Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S2MLC9_9STRA5.240e-7766.83Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S2R8P1_9STRA5.560e-7766.00Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A7S1YXA5_TRICV7.770e-7765.84Glutamine--fructose-6-phosphate transaminase (isom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20954contigH-elongata_contig20954:2199..6191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue5.9e-85
Seed eggNOG ortholog2880.D8LI63
Preferred nameGFPT1
KEGG rclassRC00010,RC00163,RC02752
KEGG koko:K00820
KEGG ReactionR00768
KEGG Pathwayko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004360,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005979,GO:0006002,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006037,GO:0006038,GO:0006040,GO:0006041,GO:0006042,GO:0006047,GO:0006048,GO:0006082,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006520,GO:0006541,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009064,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009272,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010383,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010675,GO:0010677,GO:0010906,GO:0010962,GO:0015980,GO:0016043,GO:0016051,GO:0016597,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0022607,GO:0023052,GO:0030246,GO:0030447,GO:0030448,GO:0030968,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032501,GO:0032868,GO:0032869,GO:0032870,GO:0032881,GO:0032885,GO:0032922,GO:0033554,GO:0033692,GO:0034097,GO:0034221,GO:0034285,GO:0034620,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0034976,GO:0035690,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036498,GO:0040007,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043255,GO:0043412,GO:0043413,GO:0043434,GO:0043436,GO:0043467,GO:0043933,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0045719,GO:0045912,GO:0046349,GO:0046483,GO:0048511,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051278,GO:0051289,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0062012,GO:0065003,GO:0065007,GO:0070085,GO:0070548,GO:0070589,GO:0070592,GO:0070873,GO:0070874,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0080090,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990823,GO:1990830,GO:2000112,GO:2000113
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC2.6.1.16
COG Functional cat.M
BiGG ReactioniMM904.YKL104C,iND750.YKL104C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons5
Model size618
Cds size618
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20954.6049.1prot_H-elongata_contig20954.6049.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20954 2199..6191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.8765168-CDS-H-elongata_contig20954:2198..22821622930170.8765168-CDS-H-elongata_contig20954:2198..2282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 2199..2282 +
1691679307.6341922-CDS-H-elongata_contig20954:2198..22821691679307.6341922-CDS-H-elongata_contig20954:2198..2282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 2199..2282 +
1622930170.8931997-CDS-H-elongata_contig20954:3183..33481622930170.8931997-CDS-H-elongata_contig20954:3183..3348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 3184..3348 +
1691679307.6440763-CDS-H-elongata_contig20954:3183..33481691679307.6440763-CDS-H-elongata_contig20954:3183..3348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 3184..3348 +
1622930170.906598-CDS-H-elongata_contig20954:4127..42231622930170.906598-CDS-H-elongata_contig20954:4127..4223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 4128..4223 +
1691679307.6515412-CDS-H-elongata_contig20954:4127..42231691679307.6515412-CDS-H-elongata_contig20954:4127..4223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 4128..4223 +
1622930170.918703-CDS-H-elongata_contig20954:5479..56381622930170.918703-CDS-H-elongata_contig20954:5479..5638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 5480..5638 +
1691679307.6593652-CDS-H-elongata_contig20954:5479..56381691679307.6593652-CDS-H-elongata_contig20954:5479..5638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 5480..5638 +
1622930170.9361343-CDS-H-elongata_contig20954:6077..61911622930170.9361343-CDS-H-elongata_contig20954:6077..6191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 6078..6191 +
1691679307.6669466-CDS-H-elongata_contig20954:6077..61911691679307.6669466-CDS-H-elongata_contig20954:6077..6191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20954 6078..6191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20954.6049.1

>prot_H-elongata_contig20954.6049.1 ID=prot_H-elongata_contig20954.6049.1|Name=mRNA_H-elongata_contig20954.6049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MNTLQNLGVYLNAGRETAVASTKAFTTQVTVLGLIALWFRQVREGERRAG
EASDPMDSSGLPDKSKLFEALQRLPISFGMAMGVRQQCKEKATALMNKTH
LFVLGKGYGEPVAYEGALKLKEMAYMHAEGYSGSALKHGPFALIEGPEAP
GGATPIILLILDDDHAPQMRTCAEEVKARGAELIVITDNPKLAEGLDSSP
IVIPSN
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mRNA from alignment at H-elongata_contig20954:2199..6191+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20954.6049.1 ID=mRNA_H-elongata_contig20954.6049.1|Name=mRNA_H-elongata_contig20954.6049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3993bp|location=Sequence derived from alignment at H-elongata_contig20954:2199..6191+ (Himanthalia elongata Himel1 dioecious)
ATGAATACCCTGCAGAACCTAGGAGTCTACTTGAACGCGGGGCGCGAGAC
TGCGGTAGCCTCTACCAAGGCTTTCACCACCCAGGTCAGAGATGCAGCTA
GATGCAGGCCGTTTTATATCCGCAGAGCATGAGTGATAGATGCAGCAAGG
GGGATGCAGGGCGGTAGAGTAGGGCATATTAAATTATACTTCTATTATAG
TAAAGCCCAGTGGAGAACCGCGAGGCAAGCCTCTTAGGGTGTAGGTTTCG
ACTCTTGCTGAGGCGTTTGGACTCAAGCAAGTTTTGTTGTTTTTCTTGAT
GCTACTGCTAACGAAGGAAAGGGGGGTTGTTTTGGCGTTTTATCCCTTCT
CTGGTATCTGTATTCACGTAGAAATATCGATAAATATATATACCAGGTGT
ATGTGTGTGTTTGTGTGTGTGTTTTTTTTTACATTCACCGATCGGGAATT
AGCGACACCAACAGAGAATGCACCCTAAAACATCGGAAAACGATGCTACT
AATAGTTAGCCTCTGTTTCATTTATCTCCCAGGGGGTAAGTTTCATGATG
CTGCCATCGTGTAGGGTCTTGCATTCGAAACTTTCTTTTCTTTCTTTTTT
TCTTTTCTTTTTTTTCTTACATTTTTTTTGTTATTATTTTTTAATTTAAT
AGAGAGAAAAATTCATGAGGTCCCTTGGGAGAAACGTTCAACCAGACGGG
ACGTGCGTGCTCTAGAGCTGCGATCGACCGGTGTTCTTTGTAAGAGTCAA
GACAAATTTAGTCATAGGCACATTTTGTGTGAGTCATGTTGCCTTCTGTG
TAAAAGTCAATTTACCTTTTATTGAGAATTAACCAGTCATCGTTGTGTGA
AAATCGATCACCCTTTTGCCACCTTCGCAGGGAGTGGTGTGGCGTGGGGC
TCTCCTATCTTCTGCTTATTCCTTTTGACGCGCCCTTTTGTTTTGTTTTG
TTGTCTTGTCTTGTCTTGTCCTTTTCCGTAAACAGGTTACGGTTCTCGGG
TTAATCGCCTTATGGTTTCGACAGGTTCGAGAGGGGGAGAGAAGGGCAGG
CGAGGCGTCGGATCCAATGGATTCCAGCGGCCTTCCGGACAAGAGCAAGC
TGTTCGAGGCGCTACAGCGACTCCCCATCAGCTTCGGGATGGCTATGGGG
GTGATGATTATATTTGTACAGATATAGCGTAAGGGTGGGGAGAGAGAGAG
GCTGTTCCAATCTGGGTCCTGTTGTGTAAAAATGATATCTGTGCATTTTG
ATAAGACGGTCGTGTCTGGTGACGTTAACCCTTCGCTCTTGACGTGAACC
CTGCCTGGATTGGTGGTTGGAAGATGTCGCCATTGTTTGCTTGTATCCTC
CCTTTTGCTAGAGCACCACAGTGCTAGATCTAGCATACTAGCGTAGTATA
TTCTACAAAGTACCGGTACACCGTCGGGGGTGGCACTAGTATCTCTGCAA
TAGCTGGGCTACGGATGCGATCAACACTCTACGACGACTGCTATCGACGC
GATGAACTTTTAACTGCGCTATCGGTATGCGAACATTGAAACACTTACTG
CACTATAAACAATATCATGTTGCTGCATATCAGCTATAGTGTGACGACTA
TCAGCACTACTCTGTTATAACACGAACTCCGCCATCAATGCGATGAACAT
CTATCAACACGATTAACACTAACCATACTATCAGCACGAACTGCATTGTG
AACAACACGATACGAACTGCACTGAAGAAGTACGTTCTTGAAAGTATATT
TTGGTCAATGTTTCTCGAAATCCGGACCGCTCGCTGCTGAGAGTAATTTA
TCGTTTGAGCCTTTTTCTCTGTGCGTAATTTTGTTATTGTGTAGTACTTC
AAAAAACTAAAAACATCGGTCACGCCATACCATCTCGTCATCGTCATTTG
TCAATGCCTCTTCGAACGTCGATCGACAGGTTCGACAACAGTGCAAGGAG
AAGGCAACGGCACTCATGAACAAGACGCACCTTTTTGTTCTGGGGAAGGG
CTACGGAGAGCCCGTAGCGTACGAGGTGTGTGTGTGTGTCTATTCGTCCA
TATGTGGGTCCTTATGATTTGTGGGTCCCCATTATTTGTGAGCAAATATT
TTGACTGACGGTCAAGGGTCAAGGTTGTCTGTCAAGGTATTTGTATATCA
ACTCAAAATACCTTCACATCCCCGGTCTAATTTTCTCTCTATGGAAATCC
CTATATTATTTACTTGTATAAAAGCCCGCATACATACGCACCCACAACTT
ACAGCGTAGGAACATCAGAGCATACGTATAGATAGCCAGCAGCTGTCGAT
CACCATGGAGGCCTACTGTACCTCACTGGAACCTTGGGCAAAAGAGCTTC
CCCCCCGCCGCCTAGCGACGTGCTGTTGGAGCACCTCGACATCACACCCG
AAGCAGGGAAGGCACCAAGCCAGCTGCAAGGGAAGTGTGAGAGCTGTTGC
CACCAGCTGACCATGCGGCAGGACCGCATGAAGACGTACATCATTCCACT
CCGATATACTTCATCTGCGTACGTTATACATACAGTATAGAGCTATACAT
ACTGTATGCATATATATACGGACATACAAATCTCTTATAGGTACTACCGG
TAGCAAGCTAGTAGGCTAGAACGCAAAAATATGCTTTTGTTGTTGTTGGG
GGGGGATTTTTGATTGTAATAAAGAAAGGACCAGTTTTCAATATGGGAAG
GCGTTTTCTAAAATCGGGGATTTTTTGTGTACCCTGATTTTACTGTCAAG
GCTGTCTGCCAAGGCGTTTTGGATATTGTTGTCTGTAAAGGGGTTCAACT
ATTTTGCACTTCGTTTAAAAAAAAAAAAATCGTATCAAGTAACGTCATAA
TATCCTATCGGTGTGTGAAATTTTGAAGTAACTATATGCAGTATACAATT
GTATCATGTGTAAAACGCTATGTTATCGCGCTGTCTGGTGCATAGTGTGT
AGATAGTAGATACAAACAATCACTAGCCCTTCATCTTGCCTCCCAAGCAT
TTTCGAGGGGCCTTTTTCTTCCCCTTATGCATGCTCGCCACCGCCGCCGT
TGTTTCAAAATTTTGGATAACATTTTAGTGACGCTGTACATCATTTTGCT
GCCTCTTTCGTAAAAGCTAGAGTGTCCACAGCGCCCTTCTTTTTTGCCTT
GATTTAGATACAGTATAGAATGTGCTGTATTTTTTTTATCTTCTGCATTC
TTAACATACACTATGTTGCATAGTATTTCACGGTAAAGGAGTCAATAGTA
TATACTACCAAGTCTTAACCTCGCTTCCCAGGGAGCACTGAAGCTCAAGG
AAATGGCGTACATGCACGCCGAGGGCTACAGCGGGAGCGCCCTCAAGCAC
GGTCCGTTCGCGCTTATCGAGGGACCCGAGGCGCCGGGCGGGGCAACGCC
CATCATCCTGCTCATCCTTGACGACGACCATGCTCCCCAGGTGTGCGCTT
GAGGGCGAGCCTTAGACTTCATTCCCATTCTATGAAGAGACGCCAGGAGG
CAATAGAGTATGCGATTTTTGTCGTCTTGGTTTCTCCTTTTCGTTCTCGG
GCCTAGGTTTTTGCTTTTCCGCTACAATTTTGTTTTTGTTTTCGTTGCTT
TTTCTTGTTTCCTTTTCGTCGATTGGTTTAGTTTCTTCGCTTTTTCCACC
ACAATTTTCCCACGCACCAACTCTTGCATAAAAGCCGGGGGGATTACGTA
TTCGCTGTCGTTATTGGAGGCACTACTTGTTATTACTATAGGAGACTATT
ACACACGTAAATCCGCCCACTAATCCACACCTTACACATGATATTGCGCA
CTCACGTTACACACCCTATTACATACATATACATCACTATAGTATAGTAT
TGACCTTTGAGCTTACTGCTTTTGAATAGATGCGGACTTGCGCCGAGGAA
GTGAAAGCAAGAGGTGCCGAGCTAATCGTCATTACGGACAACCCCAAGCT
TGCCGAGGGCCTCGACAGCAGTCCTATCGTCATCCCCAGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig20954:2199..6191+

>mRNA_H-elongata_contig20954.6049.1 ID=mRNA_H-elongata_contig20954.6049.1|Name=mRNA_H-elongata_contig20954.6049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig20954:2199..6191+ (Himanthalia elongata Himel1 dioecious)
ATGAATACCCTGCAGAACCTAGGAGTCTACTTGAACGCGGGGCGCGAGAC
TGCGGTAGCCTCTACCAAGGCTTTCACCACCCAGATGAATACCCTGCAGA
ACCTAGGAGTCTACTTGAACGCGGGGCGCGAGACTGCGGTAGCCTCTACC
AAGGCTTTCACCACCCAGGTTACGGTTCTCGGGTTAATCGCCTTATGGTT
TCGACAGGTTCGAGAGGGGGAGAGAAGGGCAGGCGAGGCGTCGGATCCAA
TGGATTCCAGCGGCCTTCCGGACAAGAGCAAGCTGTTCGAGGCGCTACAG
CGACTCCCCATCAGCTTCGGGATGGCTATGGGGGTTACGGTTCTCGGGTT
AATCGCCTTATGGTTTCGACAGGTTCGAGAGGGGGAGAGAAGGGCAGGCG
AGGCGTCGGATCCAATGGATTCCAGCGGCCTTCCGGACAAGAGCAAGCTG
TTCGAGGCGCTACAGCGACTCCCCATCAGCTTCGGGATGGCTATGGGGGT
TCGACAACAGTGCAAGGAGAAGGCAACGGCACTCATGAACAAGACGCACC
TTTTTGTTCTGGGGAAGGGCTACGGAGAGCCCGTAGCGTACGAGGTTCGA
CAACAGTGCAAGGAGAAGGCAACGGCACTCATGAACAAGACGCACCTTTT
TGTTCTGGGGAAGGGCTACGGAGAGCCCGTAGCGTACGAGGGAGCACTGA
AGCTCAAGGAAATGGCGTACATGCACGCCGAGGGCTACAGCGGGAGCGCC
CTCAAGCACGGTCCGTTCGCGCTTATCGAGGGACCCGAGGCGCCGGGCGG
GGCAACGCCCATCATCCTGCTCATCCTTGACGACGACCATGCTCCCCAGG
GAGCACTGAAGCTCAAGGAAATGGCGTACATGCACGCCGAGGGCTACAGC
GGGAGCGCCCTCAAGCACGGTCCGTTCGCGCTTATCGAGGGACCCGAGGC
GCCGGGCGGGGCAACGCCCATCATCCTGCTCATCCTTGACGACGACCATG
CTCCCCAGATGCGGACTTGCGCCGAGGAAGTGAAAGCAAGAGGTGCCGAG
CTAATCGTCATTACGGACAACCCCAAGCTTGCCGAGGGCCTCGACAGCAG
TCCTATCGTCATCCCCAGCAACATGCGGACTTGCGCCGAGGAAGTGAAAG
CAAGAGGTGCCGAGCTAATCGTCATTACGGACAACCCCAAGCTTGCCGAG
GGCCTCGACAGCAGTCCTATCGTCATCCCCAGCAAC
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