mRNA_H-elongata_contig209470.6047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209470.6047.1
Unique NamemRNA_H-elongata_contig209470.6047.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209470.6047.1 vs. uniprot
Match: A0A6H5JVK5_9PHAE (TNase-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.960e-11
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 QGGAEYDGQKEHLAQLETQAKEKKRGVWKQANGETPAQFKARINRRRAA 147
            QGGAEYDG++E L + E  AK +K GVW ++NGETPAQ+KARI ++R A
Sbjct:  157 QGGAEYDGREESLTEYENSAKRRKEGVWSRSNGETPAQYKARIKQQRPA 205
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BLAST of mRNA_H-elongata_contig209470.6047.1 vs. uniprot
Match: D7FRT5_ECTSI (TNase-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-9
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QGGAEYDGQKEHLAQLETQAKEKKRGVWKQANGETPAQFKARINRRRAA 147
            QGGAEYD ++E L + E  AK +K GVW ++NGETPAQ+KARI ++R A
Sbjct:  226 QGGAEYDSREESLTEYEKSAKSRKEGVWSRSNGETPAQYKARIKQQRPA 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209470.6047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVK5_9PHAE6.960e-1161.22TNase-like domain-containing protein n=1 Tax=Ectoc... [more]
D7FRT5_ECTSI1.320e-959.18TNase-like domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209470contigH-elongata_contig209470:172..330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7FRT5
Preferred nameLCL3
KEGG koko:K01174
GOsGO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.endonuclease activity
EggNOG OGs2S1U4@2759,COG1525@1
EC3.1.31.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.6910534-CDS-H-elongata_contig209470:171..3301622930170.6910534-CDS-H-elongata_contig209470:171..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209470 172..330 +
1691679307.5663757-CDS-H-elongata_contig209470:171..3301691679307.5663757-CDS-H-elongata_contig209470:171..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209470 172..330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209470.6047.1prot_H-elongata_contig209470.6047.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209470 172..330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209470.6047.1

>prot_H-elongata_contig209470.6047.1 ID=prot_H-elongata_contig209470.6047.1|Name=mRNA_H-elongata_contig209470.6047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
QGGAEYDGQKEHLAQLETQAKEKKRGVWKQANGETPAQFKARINRRRAAG
TK*
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mRNA from alignment at H-elongata_contig209470:172..330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209470.6047.1 ID=mRNA_H-elongata_contig209470.6047.1|Name=mRNA_H-elongata_contig209470.6047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig209470:172..330+ (Himanthalia elongata Himel1 dioecious)
CAGGGCGGCGCCGAGTACGACGGCCAAAAAGAACACCTCGCTCAATTAGA
AACCCAAGCCAAGGAAAAGAAAAGAGGTGTGTGGAAGCAAGCGAACGGTG
AGACGCCAGCACAGTTCAAGGCTCGGATAAACCGTCGTCGGGCGGCGGGA
ACCAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig209470:172..330+

>mRNA_H-elongata_contig209470.6047.1 ID=mRNA_H-elongata_contig209470.6047.1|Name=mRNA_H-elongata_contig209470.6047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig209470:172..330+ (Himanthalia elongata Himel1 dioecious)
CAGGGCGGCGCCGAGTACGACGGCCAAAAAGAACACCTCGCTCAATTAGA
AACCCAAGCCAAGGAAAAGAAAAGAGGTGTGTGGAAGCAAGCGAACGGTG
AGACGCCAGCACAGTTCAAGGCTCGGATAAACCGTCGTCGGGCGGCGGGA
ACCAAATAACAGGGCGGCGCCGAGTACGACGGCCAAAAAGAACACCTCGC
TCAATTAGAAACCCAAGCCAAGGAAAAGAAAAGAGGTGTGTGGAAGCAAG
CGAACGGTGAGACGCCAGCACAGTTCAAGGCTCGGATAAACCGTCGTCGG
GCGGCGGGAACCAAATAA
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