mRNA_H-elongata_contig209387.6045.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209387.6045.1
Unique NamemRNA_H-elongata_contig209387.6045.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209387.6045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209387contigH-elongata_contig209387:24..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.5237463-CDS-H-elongata_contig209387:23..4581622930170.5237463-CDS-H-elongata_contig209387:23..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209387 24..458 +
1691679307.48342-CDS-H-elongata_contig209387:23..4581691679307.48342-CDS-H-elongata_contig209387:23..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209387 24..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209387.6045.1prot_H-elongata_contig209387.6045.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209387 24..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209387.6045.1

>prot_H-elongata_contig209387.6045.1 ID=prot_H-elongata_contig209387.6045.1|Name=mRNA_H-elongata_contig209387.6045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
WEYSAIAASIISRVAQLRASAAWDIKPLLWWSLIIARVSPRVRPGIRTSA
SCPSSRTTRSGIAAGGFSGGAGVVADVVADAGNGAVVIGVAEGVAGAGAV
DSRYTYSGVSAPADIWGPSDSTVGAGEVNGSRGSCQVTSRECTTR
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mRNA from alignment at H-elongata_contig209387:24..460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209387.6045.1 ID=mRNA_H-elongata_contig209387.6045.1|Name=mRNA_H-elongata_contig209387.6045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=437bp|location=Sequence derived from alignment at H-elongata_contig209387:24..460+ (Himanthalia elongata Himel1 dioecious)
TGGGAGTATTCGGCAATTGCCGCGTCGATCATTTCGCGGGTGGCGCAACT
GCGCGCCAGTGCAGCATGGGACATTAAGCCCCTGCTGTGGTGGTCGCTTA
TTATCGCGCGCGTTTCGCCCCGGGTACGTCCAGGCATTCGCACGTCCGCT
TCGTGCCCCAGTTCCCGAACAACGCGATCGGGAATTGCTGCTGGGGGGTT
CAGTGGCGGCGCAGGTGTGGTGGCTGACGTAGTGGCTGACGCGGGCAATG
GCGCGGTGGTGATCGGAGTGGCAGAAGGTGTCGCGGGAGCTGGAGCGGTC
GACTCGAGGTACACGTATTCCGGCGTGTCTGCACCGGCTGACATTTGGGG
CCCCTCCGATTCAACTGTTGGGGCCGGGGAAGTGAACGGCTCCCGCGGTT
CTTGCCAAGTCACGTCGCGCGAGTGCACGACCCGACC
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Coding sequence (CDS) from alignment at H-elongata_contig209387:24..460+

>mRNA_H-elongata_contig209387.6045.1 ID=mRNA_H-elongata_contig209387.6045.1|Name=mRNA_H-elongata_contig209387.6045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig209387:24..460+ (Himanthalia elongata Himel1 dioecious)
TGGGAGTATTCGGCAATTGCCGCGTCGATCATTTCGCGGGTGGCGCAACT
GCGCGCCAGTGCAGCATGGGACATTAAGCCCCTGCTGTGGTGGTCGCTTA
TTATCGCGCGCGTTTCGCCCCGGGTACGTCCAGGCATTCGCACGTCCGCT
TCGTGCCCCAGTTCCCGAACAACGCGATCGGGAATTGCTGCTGGGGGGTT
CAGTGGCGGCGCAGGTGTGGTGGCTGACGTAGTGGCTGACGCGGGCAATG
GCGCGGTGGTGATCGGAGTGGCAGAAGGTGTCGCGGGAGCTGGAGCGGTC
GACTCGAGGTACACGTATTCCGGCGTGTCTGCACCGGCTGACATTTGGGG
CCCCTCCGATTCAACTGTTGGGGCCGGGGAAGTGAACGGCTCCCGCGGTT
CTTGCCAAGTCACGTCGCGCGAGTGCACGACCCGATGGGAGTATTCGGCA
ATTGCCGCGTCGATCATTTCGCGGGTGGCGCAACTGCGCGCCAGTGCAGC
ATGGGACATTAAGCCCCTGCTGTGGTGGTCGCTTATTATCGCGCGCGTTT
CGCCCCGGGTACGTCCAGGCATTCGCACGTCCGCTTCGTGCCCCAGTTCC
CGAACAACGCGATCGGGAATTGCTGCTGGGGGGTTCAGTGGCGGCGCAGG
TGTGGTGGCTGACGTAGTGGCTGACGCGGGCAATGGCGCGGTGGTGATCG
GAGTGGCAGAAGGTGTCGCGGGAGCTGGAGCGGTCGACTCGAGGTACACG
TATTCCGGCGTGTCTGCACCGGCTGACATTTGGGGCCCCTCCGATTCAAC
TGTTGGGGCCGGGGAAGTGAACGGCTCCCGCGGTTCTTGCCAAGTCACGT
CGCGCGAGTGCACGACCCGA
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