mRNA_H-elongata_contig209303.6044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209303.6044.1
Unique NamemRNA_H-elongata_contig209303.6044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 7.300e-29
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 MDMARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            MDM RLLSR PGRDAD+RNA D+WGKTHGSGIW+TGRTVLNMWRLMRSELKLCSYTLQ
Sbjct: 2129 MDMTRLLSRTPGRDADKRNARDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYTLQ 2186
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.300e-29
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 MDMARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            MDM RLLSR PGRDAD+RNA D+WGKTHGSGIW+TGRTVLNMWRLMRSELKLCSYTLQ
Sbjct: 2234 MDMTRLLSRTPGRDADKRNARDEWGKTHGSGIWLTGRTVLNMWRLMRSELKLCSYTLQ 2291
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: A0A835YMN6_9STRA (DNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-14
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    7 MARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSY 165
            + RLLSRAP  DAD RN  D +G  H SG+W+ GRTVLN+WR++RSELKL SY
Sbjct:   95 LLRLLSRAPRLDADPRNGRDSYGDDHASGLWLWGRTVLNLWRVLRSELKLQSY 147
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: A0A0D2M8Q4_9CHLO (DNA polymerase zeta subunit n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M8Q4_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 4.580e-11
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 MDMARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            +++ R  SR P   + +   +D WG+ H SGI  TGR VLNMWRLMRSELKL SY+ +
Sbjct:  141 INLLREASRTPELSSIKEKQDDQWGRDHASGIHCTGRIVLNMWRLMRSELKLTSYSFE 198
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: D8RPZ7_SELML (DNA polymerase zeta catalytic subunit n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPZ7_SELML)

HSP 1 Score: 65.5 bits (158), Expect = 5.350e-11
Identity = 25/45 (55.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   40 DADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            +A++    D+WG+THGSGI++ GRTVLN+WR+MR E+KL +YT++
Sbjct:  964 EANKTIIQDEWGRTHGSGIYVGGRTVLNLWRIMRGEVKLSNYTIE 1008
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 5.370e-11
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    7 MARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            + R+  R PG  + +   ND+WG  H SG  +TGR +LN+WR++R ELKL SYT +
Sbjct: 5201 LLRVAGRTPGTSSVKERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLSSYTFE 5256
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: A0A7S0NX68_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NX68_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 6.890e-11
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    7 MARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            + R L R P  +     + D WG++  +GI +TGR +LN+WR  +SELKLCSYTL+
Sbjct:   96 LLRQLGRTPTHEGQNERSRDTWGESVATGIHLTGRVLLNLWRCAKSELKLCSYTLE 151
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: D8RZN4_SELML (DNA polymerase zeta catalytic subunit n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RZN4_SELML)

HSP 1 Score: 65.1 bits (157), Expect = 7.330e-11
Identity = 25/45 (55.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   40 DADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            +A++    D+WG+THGSGI++ GRTVLN+WR+MR E+KL +YT++
Sbjct:  951 EANKTIIQDEWGRTHGSGIYVGGRTVLNLWRIMRGEVKLSNYTVE 995
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BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: A0A2V0NVS4_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NVS4_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 MDMARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            +++ R  SR P   + +   +D WG+ HGSG+  TGR +LNMWRLMRSELKL SY+ +
Sbjct: 2256 VNVLRAASRTPEIASLKERQDDAWGRDHGSGLHCTGRIILNMWRLMRSELKLTSYSFE 2313
[Close]
BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Match: A8IZI8_CHLRE (DNA polymerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IZI8_CHLRE)

HSP 1 Score: 63.9 bits (154), Expect = 1.850e-10
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    7 MARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSELKLCSYTLQ 174
            + R   R PG  + +   ND+WG  H SG  +TGR +LN+WR++R ELKL SYT +
Sbjct:   47 LLRAAGRTPGTSSVKERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLGSYTFE 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209303.6044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0N9_9PHAE7.300e-2989.66DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
D7G846_ECTSI7.300e-2989.66DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A835YMN6_9STRA1.160e-1464.15DNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A0D2M8Q4_9CHLO4.580e-1151.72DNA polymerase zeta subunit n=1 Tax=Monoraphidium ... [more]
D8RPZ7_SELML5.350e-1155.56DNA polymerase zeta catalytic subunit n=3 Tax=Sela... [more]
A0A835WRV5_9CHLO5.370e-1146.43DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
A0A7S0NX68_9EUKA6.890e-1146.43Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
D8RZN4_SELML7.330e-1155.56DNA polymerase zeta catalytic subunit n=1 Tax=Sela... [more]
A0A2V0NVS4_9CHLO1.370e-1050.00DNA polymerase zeta catalytic subunit n=1 Tax=Raph... [more]
A8IZI8_CHLRE1.850e-1046.43DNA polymerase (Fragment) n=1 Tax=Chlamydomonas re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209303contigH-elongata_contig209303:797..970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue6.2e-24
Seed eggNOG ortholog2880.D7G846
Preferred nameAHDC1
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase activity
EggNOG OGsCOG0417@1,KOG0968@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.4399986-CDS-H-elongata_contig209303:796..9701622930170.4399986-CDS-H-elongata_contig209303:796..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209303 797..970 -
1691679307.4725473-CDS-H-elongata_contig209303:796..9701691679307.4725473-CDS-H-elongata_contig209303:796..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209303 797..970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209303.6044.1prot_H-elongata_contig209303.6044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209303 797..970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209303.6044.1

>prot_H-elongata_contig209303.6044.1 ID=prot_H-elongata_contig209303.6044.1|Name=mRNA_H-elongata_contig209303.6044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MDMARLLSRAPGRDADRRNANDDWGKTHGSGIWITGRTVLNMWRLMRSEL
KLCSYTLQ
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mRNA from alignment at H-elongata_contig209303:797..970-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209303.6044.1 ID=mRNA_H-elongata_contig209303.6044.1|Name=mRNA_H-elongata_contig209303.6044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig209303:797..970- (Himanthalia elongata Himel1 dioecious)
ATGGACATGGCGCGGTTGTTGTCGAGGGCTCCCGGACGAGACGCCGACCG
GAGGAACGCCAACGACGACTGGGGCAAGACGCACGGCTCGGGCATCTGGA
TCACCGGGCGCACCGTGCTCAACATGTGGCGTCTCATGCGCTCCGAGCTC
AAGCTGTGCTCCTACACATTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig209303:797..970-

>mRNA_H-elongata_contig209303.6044.1 ID=mRNA_H-elongata_contig209303.6044.1|Name=mRNA_H-elongata_contig209303.6044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig209303:797..970- (Himanthalia elongata Himel1 dioecious)
ATGGACATGGCGCGGTTGTTGTCGAGGGCTCCCGGACGAGACGCCGACCG
GAGGAACGCCAACGACGACTGGGGCAAGACGCACGGCTCGGGCATCTGGA
TCACCGGGCGCACCGTGCTCAACATGTGGCGTCTCATGCGCTCCGAGCTC
AAGCTGTGCTCCTACACATTGCAGATGGACATGGCGCGGTTGTTGTCGAG
GGCTCCCGGACGAGACGCCGACCGGAGGAACGCCAACGACGACTGGGGCA
AGACGCACGGCTCGGGCATCTGGATCACCGGGCGCACCGTGCTCAACATG
TGGCGTCTCATGCGCTCCGAGCTCAAGCTGTGCTCCTACACATTGCAG
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