mRNA_H-elongata_contig2093.6043.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2093.6043.1
Unique NamemRNA_H-elongata_contig2093.6043.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: D8LQA7_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.130e-26
Identity = 56/98 (57.14%), Postives = 67/98 (68.37%), Query Frame = -1
Query:  280 GYRPYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYAEHA---------PKNTNNEVTLRGSLPGRRARATPGS 546
            G RPYLSDLAVA R+RR+GIGTELV+ACEDAC  WG+DN+YLKV  GN AAEKLY+NLGY  ++           +  N+V L G L  RR R   G+
Sbjct:  182 GVRPYLSDLAVADRYRRMGIGTELVKACEDACIEWGYDNMYLKVREGNVAAEKLYENLGYVVYSNNSGFMVETTSDKPNDVMLCGDLRARRRREVAGA 279          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: A0A7S2SMQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMQ9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.330e-13
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = -1
Query:  364 RPYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYA 540
            RPY+SDL V   FRR GI   L+R CE  C  WG+ ++YLKV+A N AA +LY +LGYA
Sbjct:  130 RPYMSDLTVCPLFRRRGIAKSLIRYCEAVCVSWGYPSMYLKVDASNEAAFRLYSSLGYA 188          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: A0A7R9UCL9_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.050e-12
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = -1
Query:  349 RPYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYAEHAPK 540
            RPYLSDL VA+ +RR GI T LV+  E+ C  WGF++++LKV+  N  A  +Y  LGY   +P+
Sbjct:  143 RPYLSDLGVAKSWRRCGIATALVKVSEEVCMAWGFEHMHLKVDQTNVVARNMYAKLGYRVTSPE 206          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: UPI001F552BC4 (GNAT family N-acetyltransferase n=2 Tax=Nostoc sp. FACHB-110 TaxID=2692834 RepID=UPI001F552BC4)

HSP 1 Score: 69.3 bits (168), Expect = 3.460e-11
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = -1
Query:  358 PYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYAEH 537
            PYLS+LAVA ++RR G+ ++L+ +CED C  WG+ +LYL V   N  A +LY  LGY  H
Sbjct:  127 PYLSNLAVAHKYRRHGVASKLLTSCEDICREWGYQDLYLHVLEDNHQARQLYCKLGYRMH 186          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: A0A8J6CCI5_DIALT (N-acetyltransferase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCI5_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 1.620e-10
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = -1
Query:  367 LSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGY 531
            LS+L V  R RR GI  +LVR CED    WGFD LYLKV A N+ A KLY+ LGY
Sbjct:  106 LSNLVVEPRARRRGIARKLVRKCEDEVRAWGFDKLYLKVEAPNSPARKLYEKLGY 160          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: A0A8J7DIP4_9CYAN (GNAT family N-acetyltransferase n=1 Tax=aff. Roholtiella sp. LEGE 12411 TaxID=1828822 RepID=A0A8J7DIP4_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 2.140e-10
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = -1
Query:  316 PYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYAEHAPKNTNNEVTLRGS 537
            PYLS+LAV  ++RR G+G+EL+ +CE     WGF +LYL V   N  A +LY  LGY  H  ++  N   LR S
Sbjct:  117 PYLSNLAVHPKYRRHGVGSELLISCEKVSQDWGFQDLYLHVLENNYQARQLYFKLGYRVHKVESNWNTYLLRRS 190          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: A0A7S4EDE6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDE6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.490e-10
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -1
Query:  367 GGYRPYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGY 549
            G  RPY+SDLAV   +RR G+ T LV+ CE     W FD ++LKV A N AA K+Y  LGY
Sbjct:  227 GRPRPYVSDLAVREDYRRRGLATCLVQKCESIVKAWAFDRVFLKVEASNEAARKMYGELGY 287          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: UPI000B003ED3 (GNAT family N-acetyltransferase n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI000B003ED3)

HSP 1 Score: 65.5 bits (158), Expect = 7.530e-10
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = -1
Query:  358 PYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYAEH 537
            PYLS+LA+A ++RR G+ + L+  CE  C  WGF +LYL V   N  A +LY  LGY  H
Sbjct:  117 PYLSNLAIAPKYRRYGLASSLLITCEQICQDWGFQDLYLHVLENNHQARQLYFKLGYRVH 176          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: A0A218QEF3_9CYAN (GCN5-related N-acetyltransferase n=5 Tax=Nostocales TaxID=1161 RepID=A0A218QEF3_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 2.670e-9
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1
Query:  358 PYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYAEH 537
            PYLS+LAV  ++RR+G  +EL++ACE+    WGF +LYL V   N  A +LY   GY  H
Sbjct:  133 PYLSNLAVHPKYRRLGAASELLKACEEVALLWGFKDLYLHVLENNHQARQLYFKAGYQVH 192          
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Match: M1X2H7_9NOST (GCN5-related N-acetyltransferase n=2 Tax=Richelia TaxID=98443 RepID=M1X2H7_9NOST)

HSP 1 Score: 63.5 bits (153), Expect = 4.240e-9
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = -1
Query:  325 PYLSDLAVARRFRRIGIGTELVRACEDACARWGFDNLYLKVNAGNAAAEKLYQNLGYAEHAPKNTNNEVTL 537
            PYLS+LAV R++RR G+ ++L+ +CE     WGF  LYL V   N  A++LY  LGY  +   +  N+ T 
Sbjct:  125 PYLSNLAVNRKYRRQGVASQLLNSCEQIAISWGFKELYLHVLEDNQQAQQLYFKLGYRIYTMDSHWNKFTF 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2093.6043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQA7_ECTSI1.130e-2657.14N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7S2SMQ9_9STRA3.330e-1355.93Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9UCL9_9STRA5.050e-1248.44Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
UPI001F552BC43.460e-1150.00GNAT family N-acetyltransferase n=2 Tax=Nostoc sp.... [more]
A0A8J6CCI5_DIALT1.620e-1060.00N-acetyltransferase domain-containing protein n=1 ... [more]
A0A8J7DIP4_9CYAN2.140e-1045.95GNAT family N-acetyltransferase n=1 Tax=aff. Rohol... [more]
A0A7S4EDE6_9STRA2.490e-1052.46Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
UPI000B003ED37.530e-1048.33GNAT family N-acetyltransferase n=1 Tax=Sphaerospe... [more]
A0A218QEF3_9CYAN2.670e-948.33GCN5-related N-acetyltransferase n=5 Tax=Nostocale... [more]
M1X2H7_9NOST4.240e-942.25GCN5-related N-acetyltransferase n=2 Tax=Richelia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2093contigH-elongata_contig2093:11902..12450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size549
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.294965-UTR-H-elongata_contig2093:11901..120571622930170.294965-UTR-H-elongata_contig2093:11901..12057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2093 11902..12057 +
1691679307.4525785-UTR-H-elongata_contig2093:11901..120571691679307.4525785-UTR-H-elongata_contig2093:11901..12057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2093 11902..12057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.3086112-CDS-H-elongata_contig2093:12057..124501622930170.3086112-CDS-H-elongata_contig2093:12057..12450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2093 12058..12450 +
1691679307.4627752-CDS-H-elongata_contig2093:12057..124501691679307.4627752-CDS-H-elongata_contig2093:12057..12450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2093 12058..12450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2093.6043.1prot_H-elongata_contig2093.6043.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2093 12058..12450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2093.6043.1

>prot_H-elongata_contig2093.6043.1 ID=prot_H-elongata_contig2093.6043.1|Name=mRNA_H-elongata_contig2093.6043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MGQSVSRVIKIRHPLRQKYIPSVHTSAITARSLPSLYSLVAASRGSSGSS
SRQTSAKRHLVVGVFGSVLRVAEVLVEFLGCSVTGVHLQVQVVEPPPRAR
VLASPNELRPDPDPSKAACHRKIRQIGAVSS
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mRNA from alignment at H-elongata_contig2093:11902..12450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2093.6043.1 ID=mRNA_H-elongata_contig2093.6043.1|Name=mRNA_H-elongata_contig2093.6043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at H-elongata_contig2093:11902..12450+ (Himanthalia elongata Himel1 dioecious)
CCCATGACAGAAAACACTTAACTCTTGACAAATTCCGCGGCGTCCCTACT TACAATACTACCAACCCACCCAGCCCACTGCTGCTATGGGGGTTTCCTGA TCAAAACCCGCCTTGCCGTCTCGATTGGTATAAACAAAACTAACTTTTCC CCTTCCATGGGTCAGAGTGTTTCGAGAGTTATCAAGATTCGTCATCCCCT GAGACAAAAATACATACCGTCTGTACATACTTCAGCGATCACCGCCCGTT CTCTACCCTCCCTTTACAGCCTCGTCGCCGCTTCCCGGGGTAGCTCGGGC TCGTCGTCCAGGCAGACTTCCGCGAAGCGTCACCTCGTTGTTGGTGTTTT TGGGAGCGTGCTCCGCGTAGCCGAGGTTTTGGTAGAGTTTCTCGGCTGCA GCGTTACCGGCGTTCACCTTCAAGTACAAGTTGTCGAACCCCCACCTCGC GCACGCGTCCTCGCAAGCCCGAACGAGCTCCGTCCCGATCCCGATCCTTC GAAAGCGGCGTGCCACCGCAAGATCCGACAGATAGGGGCGGTATCCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig2093:11902..12450+

>mRNA_H-elongata_contig2093.6043.1 ID=mRNA_H-elongata_contig2093.6043.1|Name=mRNA_H-elongata_contig2093.6043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig2093:11902..12450+ (Himanthalia elongata Himel1 dioecious)
ATGGGTCAGAGTGTTTCGAGAGTTATCAAGATTCGTCATCCCCTGAGACA
AAAATACATACCGTCTGTACATACTTCAGCGATCACCGCCCGTTCTCTAC
CCTCCCTTTACAGCCTCGTCGCCGCTTCCCGGGGTAGCTCGGGCTCGTCG
TCCAGGCAGACTTCCGCGAAGCGTCACCTCGTTGTTGGTGTTTTTGGGAG
CGTGCTCCGCGTAGCCGAGGTTTTGGTAGAGTTTCTCGGCTGCAGCGTTA
CCGGCGTTCACCTTCAAGTACAAGTTGTCGAACCCCCACCTCGCGCACGC
GTCCTCGCAAGCCCGAACGAGCTCCGTCCCGATCCCGATCCTTCGAAAGC
GGCGTGCCACCGCAAGATCCGACAGATAGGGGCGGTATCCTCCATGGGTC
AGAGTGTTTCGAGAGTTATCAAGATTCGTCATCCCCTGAGACAAAAATAC
ATACCGTCTGTACATACTTCAGCGATCACCGCCCGTTCTCTACCCTCCCT
TTACAGCCTCGTCGCCGCTTCCCGGGGTAGCTCGGGCTCGTCGTCCAGGC
AGACTTCCGCGAAGCGTCACCTCGTTGTTGGTGTTTTTGGGAGCGTGCTC
CGCGTAGCCGAGGTTTTGGTAGAGTTTCTCGGCTGCAGCGTTACCGGCGT
TCACCTTCAAGTACAAGTTGTCGAACCCCCACCTCGCGCACGCGTCCTCG
CAAGCCCGAACGAGCTCCGTCCCGATCCCGATCCTTCGAAAGCGGCGTGC
CACCGCAAGATCCGACAGATAGGGGCGGTATCCTCC
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