mRNA_H-elongata_contig209150.6039.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI) HSP 1 Score: 132 bits (331), Expect = 3.400e-38 Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query: 1 MAAPIKIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETSQWTP 240
++ P + RPAQA+FK+QPKMTKWEVKEYL+KIYN+PVKKVMTQN+EGKRKRI+GKRS+V YKRPNFKKAIVTF + QWTP
Sbjct: 15 ISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFASPQWTP 94
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.440e-24 Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1
Query: 10 PIKIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
P + RP QA F+V PKMTK EVKEYL K+Y +PVKKVMTQN+ GKRKRI G RS++ YKRP+FKKAIVT +
Sbjct: 18 PTRGRPQQAAFRVSPKMTKLEVKEYLLKVYGVPVKKVMTQNFLGKRKRIQGSRSIISYKRPDFKKAIVTLD 88
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A7S3QJC9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJC9_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 7.210e-22 Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 16 KIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETS 228
K PA ATF+V+PKMTK E+KEYL+KIYNLPVKKV T N+ GKRKR +G++ +V YK +FKKA VTF+ S
Sbjct: 29 KTAPATATFRVKPKMTKHEIKEYLTKIYNLPVKKVNTANFAGKRKRAMGRQKIVEYKYKDFKKAFVTFDDS 99
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: K0RNX6_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RNX6_THAOC) HSP 1 Score: 87.8 bits (216), Expect = 8.220e-21 Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 25 PAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
PAQATF++ PKMTK EVKEYL+KIY LPV KV TQNY GKR R++GK + KRP+FKKA VTF+
Sbjct: 8 PAQATFRILPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDFKKAFVTFD 73
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A6U3SB59_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB59_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.150e-20 Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 28 AQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTF 219
A ATF+V PKMTK EVKE+L+KIYNLPV KV TQNY GKRKR++GKR + YK +FKKAIVTF
Sbjct: 34 ATATFRVLPKMTKHEVKEHLTKIYNLPVAKVNTQNYLGKRKRVVGKRRIAYYKNADFKKAIVTF 97
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A7S4IBC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IBC0_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.180e-20 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 28 AQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
A A F+V PKMTK E+KEYL+KIYNLPVKKV T NY GKRKR++GKR + YK +FKKAIV F+
Sbjct: 33 AMAVFRVMPKMTKHEIKEYLTKIYNLPVKKVNTMNYLGKRKRVIGKRGIAYYKYRDFKKAIVKFD 97
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A448YYR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYR3_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 9.310e-20 Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 22 RPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETS 228
+PA+ATF+V P+MTK E+KEYL+KIY LPV+KV T NY GKRK + G R V+RYK +FKKA+V+F+ S
Sbjct: 30 QPARATFRVLPRMTKHEIKEYLTKIYGLPVQKVNTANYLGKRKLVRGSRQVIRYKYADFKKAVVSFDRS 98
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A7S0ABN5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ABN5_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 9.820e-20 Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 28 AQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETS 228
AQATF+V P+MTK E+KE+L KIY+LPVKKV T NY GKRKR+ G+R V YK +FKKAIVTF+ S
Sbjct: 33 AQATFRVLPRMTKHEIKEHLQKIYDLPVKKVHTMNYLGKRKRVYGERKVAYYKYRDFKKAIVTFDDS 99
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: K0TJH6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJH6_THAOC) HSP 1 Score: 85.5 bits (210), Expect = 2.010e-19 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 25 PAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
PAQATF+V PKMTK EVKEYL+KIY LPV KV TQNY GKR R++GK + KRP++KKA V+F+
Sbjct: 49 PAQATFRVLPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDYKKAFVSFD 114
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: B8C4N9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4N9_THAPS) HSP 1 Score: 84.7 bits (208), Expect = 4.350e-19 Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 25 PAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTF 219
PA A F++ PKMTK EV+EYL+KIY+LPVK+V TQNY GKR RI+GKR +V KRP++KKA V F
Sbjct: 48 PATAQFRILPKMTKHEVREYLTKIYDLPVKEVRTQNYLGKRMRIIGKRHIVYAKRPDYKKAFVVF 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig209150.6039.1 >prot_H-elongata_contig209150.6039.1 ID=prot_H-elongata_contig209150.6039.1|Name=mRNA_H-elongata_contig209150.6039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp MAAPIKIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKback to top mRNA from alignment at H-elongata_contig209150:57..786+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig209150.6039.1 ID=mRNA_H-elongata_contig209150.6039.1|Name=mRNA_H-elongata_contig209150.6039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=730bp|location=Sequence derived from alignment at H-elongata_contig209150:57..786+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig209150:57..786+ >mRNA_H-elongata_contig209150.6039.1 ID=mRNA_H-elongata_contig209150.6039.1|Name=mRNA_H-elongata_contig209150.6039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig209150:57..786+ (Himanthalia elongata Himel1 dioecious)back to top |