mRNA_H-elongata_contig209150.6039.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209150.6039.1
Unique NamemRNA_H-elongata_contig209150.6039.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.400e-38
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 MAAPIKIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETSQWTP 240
            ++ P + RPAQA+FK+QPKMTKWEVKEYL+KIYN+PVKKVMTQN+EGKRKRI+GKRS+V YKRPNFKKAIVTF + QWTP
Sbjct:   15 ISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFASPQWTP 94          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.440e-24
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   10 PIKIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
            P + RP QA F+V PKMTK EVKEYL K+Y +PVKKVMTQN+ GKRKRI G RS++ YKRP+FKKAIVT +
Sbjct:   18 PTRGRPQQAAFRVSPKMTKLEVKEYLLKVYGVPVKKVMTQNFLGKRKRIQGSRSIISYKRPDFKKAIVTLD 88          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A7S3QJC9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJC9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.210e-22
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query:   16 KIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETS 228
            K  PA ATF+V+PKMTK E+KEYL+KIYNLPVKKV T N+ GKRKR +G++ +V YK  +FKKA VTF+ S
Sbjct:   29 KTAPATATFRVKPKMTKHEIKEYLTKIYNLPVKKVNTANFAGKRKRAMGRQKIVEYKYKDFKKAFVTFDDS 99          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: K0RNX6_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RNX6_THAOC)

HSP 1 Score: 87.8 bits (216), Expect = 8.220e-21
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   25 PAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
            PAQATF++ PKMTK EVKEYL+KIY LPV KV TQNY GKR R++GK  +   KRP+FKKA VTF+
Sbjct:    8 PAQATFRILPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDFKKAFVTFD 73          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A6U3SB59_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB59_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.150e-20
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   28 AQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTF 219
            A ATF+V PKMTK EVKE+L+KIYNLPV KV TQNY GKRKR++GKR +  YK  +FKKAIVTF
Sbjct:   34 ATATFRVLPKMTKHEVKEHLTKIYNLPVAKVNTQNYLGKRKRVVGKRRIAYYKNADFKKAIVTF 97          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A7S4IBC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IBC0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.180e-20
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   28 AQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
            A A F+V PKMTK E+KEYL+KIYNLPVKKV T NY GKRKR++GKR +  YK  +FKKAIV F+
Sbjct:   33 AMAVFRVMPKMTKHEIKEYLTKIYNLPVKKVNTMNYLGKRKRVIGKRGIAYYKYRDFKKAIVKFD 97          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A448YYR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYR3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.310e-20
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   22 RPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETS 228
            +PA+ATF+V P+MTK E+KEYL+KIY LPV+KV T NY GKRK + G R V+RYK  +FKKA+V+F+ S
Sbjct:   30 QPARATFRVLPRMTKHEIKEYLTKIYGLPVQKVNTANYLGKRKLVRGSRQVIRYKYADFKKAVVSFDRS 98          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: A0A7S0ABN5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ABN5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.820e-20
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   28 AQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFETS 228
            AQATF+V P+MTK E+KE+L KIY+LPVKKV T NY GKRKR+ G+R V  YK  +FKKAIVTF+ S
Sbjct:   33 AQATFRVLPRMTKHEIKEHLQKIYDLPVKKVHTMNYLGKRKRVYGERKVAYYKYRDFKKAIVTFDDS 99          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: K0TJH6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJH6_THAOC)

HSP 1 Score: 85.5 bits (210), Expect = 2.010e-19
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   25 PAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTFE 222
            PAQATF+V PKMTK EVKEYL+KIY LPV KV TQNY GKR R++GK  +   KRP++KKA V+F+
Sbjct:   49 PAQATFRVLPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDYKKAFVSFD 114          
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Match: B8C4N9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4N9_THAPS)

HSP 1 Score: 84.7 bits (208), Expect = 4.350e-19
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   25 PAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRKRILGKRSVVRYKRPNFKKAIVTF 219
            PA A F++ PKMTK EV+EYL+KIY+LPVK+V TQNY GKR RI+GKR +V  KRP++KKA V F
Sbjct:   48 PATAQFRILPKMTKHEVREYLTKIYDLPVKEVRTQNYLGKRMRIIGKRHIVYAKRPDYKKAFVVF 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209150.6039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL11_ECTSI3.400e-3878.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVT8_9STRA2.440e-2469.01Ribosomal protein L23/L15e core domain-containing ... [more]
A0A7S3QJC9_9STRA7.210e-2264.79Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0RNX6_THAOC8.220e-2168.18Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6U3SB59_9STRA1.150e-2071.88Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4IBC0_9STRA2.180e-2067.69Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448YYR3_9STRA9.310e-2062.32Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0ABN5_9STRA9.820e-2067.16Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
K0TJH6_THAOC2.010e-1966.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8C4N9_THAPS4.350e-1966.15Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209150contigH-elongata_contig209150:57..786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue7.6e-29
Seed eggNOG ortholog2880.D7FL11
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
EggNOG free text desc.Ribosomal protein L23
EggNOG OGs2CJ9U@1,2S3T6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L25/L23
Ec32 orthologEc-21_002040.1
Exons2
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.7263384-CDS-H-elongata_contig209150:56..1731622930169.7263384-CDS-H-elongata_contig209150:56..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209150 57..173 +
1691679307.1950152-CDS-H-elongata_contig209150:56..1731691679307.1950152-CDS-H-elongata_contig209150:56..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209150 57..173 +
1622930169.743108-CDS-H-elongata_contig209150:633..7861622930169.743108-CDS-H-elongata_contig209150:633..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209150 634..786 +
1691679307.2064393-CDS-H-elongata_contig209150:633..7861691679307.2064393-CDS-H-elongata_contig209150:633..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209150 634..786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209150.6039.1prot_H-elongata_contig209150.6039.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209150 57..786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209150.6039.1

>prot_H-elongata_contig209150.6039.1 ID=prot_H-elongata_contig209150.6039.1|Name=mRNA_H-elongata_contig209150.6039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MAAPIKIRPAQATFKVQPKMTKWEVKEYLSKIYNLPVKKVMTQNYEGKRK
RILGKRSVVRYKRPNFKKAIVTFETSQWTPKASSSSSSS*
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mRNA from alignment at H-elongata_contig209150:57..786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209150.6039.1 ID=mRNA_H-elongata_contig209150.6039.1|Name=mRNA_H-elongata_contig209150.6039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=730bp|location=Sequence derived from alignment at H-elongata_contig209150:57..786+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCCCCAATCAAGATTCGACCGGCGCAGGCCACGTTCAAGGTTCA GCCTAAGATGACCAAATGGGAAGTGAAGGAATATCTGTCCAAGATATACA ACTTGCCGGTGAAAAAGGTGGGCCTCGGTCGAGACAAGCATTTGTGATAC CTTATGTAATACCCCGCCGAAAAGAGCGTGGAAGGCGTTTTTTTACACCG CAGCCGTGGTTGGGCGAGAGTAATTATGTCTGTCTGAAAAACGCGTTGAG TGCTGTCATTTCAAGAATTGAGCCGCTCGGCGGTACATCATATCGATAGA ATCGCAGATTGACTCGTATCAGGGTTTCACTTTTTTTTTCCGCCGCCGAA GGGTCGAATCTGTGTTGGAGAATAGGCCGGCGCGTGCAGGCGTTTTTTCC CACGATCGCGTAAGTAACCCCAAACTTCCAATTAACTGTATGTAAGTCTT CAGGCGTGAAATGCGCAAGCAAACAGCGTGCTTTGGTCCAGAGGGAAGCT TGCAAAGCTCGCCCCATTGCGCTGTCCATCTGATGATATAAACCCTCCTG TATGATCGCTGACCGGGCTCCACTCAGGTGATGACCCAGAACTATGAGGG CAAGCGCAAGAGAATACTAGGAAAGCGATCGGTCGTGCGTTACAAACGGC CTAACTTCAAGAAGGCCATCGTTACGTTCGAGACGTCGCAGTGGACACCG AAGGCTTCATCTAGTTCGAGCTCCAGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig209150:57..786+

>mRNA_H-elongata_contig209150.6039.1 ID=mRNA_H-elongata_contig209150.6039.1|Name=mRNA_H-elongata_contig209150.6039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig209150:57..786+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCCCCAATCAAGATTCGACCGGCGCAGGCCACGTTCAAGGTTCA
GCCTAAGATGACCAAATGGGAAGTGAAGGAATATCTGTCCAAGATATACA
ACTTGCCGGTGAAAAAGATGGCAGCCCCAATCAAGATTCGACCGGCGCAG
GCCACGTTCAAGGTTCAGCCTAAGATGACCAAATGGGAAGTGAAGGAATA
TCTGTCCAAGATATACAACTTGCCGGTGAAAAAGGTGATGACCCAGAACT
ATGAGGGCAAGCGCAAGAGAATACTAGGAAAGCGATCGGTCGTGCGTTAC
AAACGGCCTAACTTCAAGAAGGCCATCGTTACGTTCGAGACGTCGCAGTG
GACACCGAAGGCTTCATCTAGTTCGAGCTCCAGCTAAGTGATGACCCAGA
ACTATGAGGGCAAGCGCAAGAGAATACTAGGAAAGCGATCGGTCGTGCGT
TACAAACGGCCTAACTTCAAGAAGGCCATCGTTACGTTCGAGACGTCGCA
GTGGACACCGAAGGCTTCATCTAGTTCGAGCTCCAGCTAA
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