mRNA_H-elongata_contig20914.6038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20914.6038.1
Unique NamemRNA_H-elongata_contig20914.6038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20914.6038.1 vs. uniprot
Match: A0A6H5K572_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K572_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.690e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 3 
Query:    3 MLGVGSLVEGEDSDRVLAQVALVSGVTIGPQERDAMVCSAEVWAGRGPSPARRRRQLENLPPTPLHAA 206
            M GVGSLVE EDSDRVLAQVALVSGVTIGPQERDAMVCSAEVWAGRGPSPAR+RR+LEN+PPTPLHA+
Sbjct: 1310 MSGVGSLVEAEDSDRVLAQVALVSGVTIGPQERDAMVCSAEVWAGRGPSPARKRRELENIPPTPLHAS 1377
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BLAST of mRNA_H-elongata_contig20914.6038.1 vs. uniprot
Match: D7FJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ52_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.840e-7
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 3 
Query:    3 MLGVGSLVEGEDSDRVLAQVALVSGVTIGPQ 95
            M GVGSLVE EDSDRVLAQVALVSGVTIGPQ
Sbjct: 1042 MSGVGSLVEAEDSDRVLAQVALVSGVTIGPQ 1072
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20914.6038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K572_9PHAE3.690e-3291.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ52_ECTSI2.840e-793.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20914contigH-elongata_contig20914:1877..2639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20914.6038.1prot_H-elongata_contig20914.6038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20914 1877..2637 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.6167629-CDS-H-elongata_contig20914:1876..20351622930169.6167629-CDS-H-elongata_contig20914:1876..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20914 1877..2035 -
1691679307.1699746-CDS-H-elongata_contig20914:1876..20351691679307.1699746-CDS-H-elongata_contig20914:1876..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20914 1877..2035 -
1622930169.6362534-CDS-H-elongata_contig20914:2544..26371622930169.6362534-CDS-H-elongata_contig20914:2544..2637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20914 2545..2637 -
1691679307.1778188-CDS-H-elongata_contig20914:2544..26371691679307.1778188-CDS-H-elongata_contig20914:2544..2637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20914 2545..2637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.652709-UTR-H-elongata_contig20914:2637..26391622930169.652709-UTR-H-elongata_contig20914:2637..2639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20914 2638..2639 -
1691679307.1863165-UTR-H-elongata_contig20914:2637..26391691679307.1863165-UTR-H-elongata_contig20914:2637..2639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20914 2638..2639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20914.6038.1

>prot_H-elongata_contig20914.6038.1 ID=prot_H-elongata_contig20914.6038.1|Name=mRNA_H-elongata_contig20914.6038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MLGVGSLVEGEDSDRVLAQVALVSGVTIGPQERDAMVCSAEVWAGRGPSP
ARRRRQLENLPPTPLHAAAQPRGSPGGRLSAAGG
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mRNA from alignment at H-elongata_contig20914:1877..2639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20914.6038.1 ID=mRNA_H-elongata_contig20914.6038.1|Name=mRNA_H-elongata_contig20914.6038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=763bp|location=Sequence derived from alignment at H-elongata_contig20914:1877..2639- (Himanthalia elongata Himel1 dioecious)
GCATGTTGGGAGTGGGCAGCCTGGTGGAGGGTGAAGACAGCGACCGCGTC
TTGGCGCAAGTAGCCTTAGTGTCTGGCGTTACAATCGGACCCCAGGTAGT
GTCCAGCTCCTGTAGCTCGTCGCGATCGTGTATTTTTCTACCTCTGTTCC
TCATTCGGCAGAATCTTGGAAGCAAGACCTTGTTTTTTTGCCTCGGCGGT
CTTTCATAGCCTATCCTATCCTATTTATAGCAGTAAGTATGTCGCTCTTA
GCTCTGAAGAGAGGTCAAAGATATGATGAGAGCGAATGTTAAAATGTTAA
AATGTTAATGTTAGTGGGTGGCGGCGTCGTTACGTCGAAAAAGAGGCACA
ATTGGCACATGCTATAGCTCTATATAGCTCTATATGACATACAGAGAATA
CTGAGCTTGGGTTTTGAGGATTGGGTGCGTTGAGATCGGATGGAATGAGC
TGGGGTGAGATGGAAGGAGCTTGAATGGTAACAACCATCAATTACTCGTA
ATATATACTATCACACAATCGTAATTTATACTATCACACACCGCCGTGGC
ATGGTATACTATACACCGCCGCACCGCCGCACTGCCATATATTTTTATCT
TCAGGAGCGCGACGCCATGGTATGCAGCGCCGAGGTCTGGGCCGGCCGCG
GACCATCCCCGGCCAGGAGACGCCGCCAGCTGGAAAATCTCCCCCCCACA
CCCCTGCACGCCGCGGCACAGCCGCGTGGGAGTCCGGGCGGGCGTTTGTC
CGCTGCAGGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig20914:1877..2639-

>mRNA_H-elongata_contig20914.6038.1 ID=mRNA_H-elongata_contig20914.6038.1|Name=mRNA_H-elongata_contig20914.6038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig20914:1877..2639- (Himanthalia elongata Himel1 dioecious)
ATGTTGGGAGTGGGCAGCCTGGTGGAGGGTGAAGACAGCGACCGCGTCTT
GGCGCAAGTAGCCTTAGTGTCTGGCGTTACAATCGGACCCCAGATGTTGG
GAGTGGGCAGCCTGGTGGAGGGTGAAGACAGCGACCGCGTCTTGGCGCAA
GTAGCCTTAGTGTCTGGCGTTACAATCGGACCCCAGGAGCGCGACGCCAT
GGTATGCAGCGCCGAGGTCTGGGCCGGCCGCGGACCATCCCCGGCCAGGA
GACGCCGCCAGCTGGAAAATCTCCCCCCCACACCCCTGCACGCCGCGGCA
CAGCCGCGTGGGAGTCCGGGCGGGCGTTTGTCCGCTGCAGGAGGGGAGCG
CGACGCCATGGTATGCAGCGCCGAGGTCTGGGCCGGCCGCGGACCATCCC
CGGCCAGGAGACGCCGCCAGCTGGAAAATCTCCCCCCCACACCCCTGCAC
GCCGCGGCACAGCCGCGTGGGAGTCCGGGCGGGCGTTTGTCCGCTGCAGG
AGGG
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