mRNA_H-elongata_contig209139.6037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209139.6037.1
Unique NamemRNA_H-elongata_contig209139.6037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209139.6037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209139contigH-elongata_contig209139:17..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size221
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.5545208-CDS-H-elongata_contig209139:16..1281622930169.5545208-CDS-H-elongata_contig209139:16..128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209139 17..128 +
1691679307.150267-CDS-H-elongata_contig209139:16..1281691679307.150267-CDS-H-elongata_contig209139:16..128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209139 17..128 +
1622930169.5684516-CDS-H-elongata_contig209139:375..4821622930169.5684516-CDS-H-elongata_contig209139:375..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209139 376..482 +
1691679307.1591077-CDS-H-elongata_contig209139:375..4821691679307.1591077-CDS-H-elongata_contig209139:375..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209139 376..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209139.6037.1prot_H-elongata_contig209139.6037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209139 17..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209139.6037.1

>prot_H-elongata_contig209139.6037.1 ID=prot_H-elongata_contig209139.6037.1|Name=mRNA_H-elongata_contig209139.6037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
DDDYCDTYTCSDGYEYKDDYKNIECDGDCDDATCCDKDDYCDTYTCSDGY
EYKDGYKTIVCDGECDDDTCCDK
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mRNA from alignment at H-elongata_contig209139:17..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209139.6037.1 ID=mRNA_H-elongata_contig209139.6037.1|Name=mRNA_H-elongata_contig209139.6037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=467bp|location=Sequence derived from alignment at H-elongata_contig209139:17..483+ (Himanthalia elongata Himel1 dioecious)
GACGATGACTACTGCGACACATACACCTGTTCCGACGGTTACGAGTATAA
GGACGACTACAAGAATATCGAGTGCGACGGCGATTGCGACGACGCCACGT
GCTGCGACAAAGGTACTTTTCAATTATTGACGTAAGCTTGACCACTTGTG
AGATCGCGTTTTTTTGTCATTTTTTGTGGTCGACTGTTTTACTATCAAGC
AAGAGGGTACCATTCAGCGCCCTGTTCCTCTCTTCGATATCTAGGTTGTC
GTAAAATGTATATATAGCCGTCGTGGACTTCTATTAACTTAAGCACCATT
GCCGCCAGTGTAATGTATTATCAATCCATATCTTGGTCATTTTGCCCCCA
TATTAAAAGATGACTACTGCGACACATACACCTGCTCCGACGGTTACGAG
TACAAGGACGGCTACAAGACTATCGTGTGCGACGGGGAATGCGATGACGA
CACATGCTGCGACAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig209139:17..483+

>mRNA_H-elongata_contig209139.6037.1 ID=mRNA_H-elongata_contig209139.6037.1|Name=mRNA_H-elongata_contig209139.6037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig209139:17..483+ (Himanthalia elongata Himel1 dioecious)
GACGATGACTACTGCGACACATACACCTGTTCCGACGGTTACGAGTATAA
GGACGACTACAAGAATATCGAGTGCGACGGCGATTGCGACGACGCCACGT
GCTGCGACAAAGGACGATGACTACTGCGACACATACACCTGTTCCGACGG
TTACGAGTATAAGGACGACTACAAGAATATCGAGTGCGACGGCGATTGCG
ACGACGCCACGTGCTGCGACAAAGATGACTACTGCGACACATACACCTGC
TCCGACGGTTACGAGTACAAGGACGGCTACAAGACTATCGTGTGCGACGG
GGAATGCGATGACGACACATGCTGCGACAAAATGACTACTGCGACACATA
CACCTGCTCCGACGGTTACGAGTACAAGGACGGCTACAAGACTATCGTGT
GCGACGGGGAATGCGATGACGACACATGCTGCGACAAA
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