mRNA_H-elongata_contig20912.6036.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20912.6036.1
Unique NamemRNA_H-elongata_contig20912.6036.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20912.6036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20912contigH-elongata_contig20912:1507..3226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size510
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20912.6036.1prot_H-elongata_contig20912.6036.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20912 1591..3136 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.4202616-UTR-H-elongata_contig20912:1506..15901622930169.4202616-UTR-H-elongata_contig20912:1506..1590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20912 1507..1590 -
1691679307.1020923-UTR-H-elongata_contig20912:1506..15901691679307.1020923-UTR-H-elongata_contig20912:1506..1590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20912 1507..1590 -
1622930169.5095968-UTR-H-elongata_contig20912:3136..32261622930169.5095968-UTR-H-elongata_contig20912:3136..3226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20912 3137..3226 -
1691679307.1409519-UTR-H-elongata_contig20912:3136..32261691679307.1409519-UTR-H-elongata_contig20912:3136..3226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20912 3137..3226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.4670312-CDS-H-elongata_contig20912:1590..17681622930169.4670312-CDS-H-elongata_contig20912:1590..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20912 1591..1768 -
1691679307.11334-CDS-H-elongata_contig20912:1590..17681691679307.11334-CDS-H-elongata_contig20912:1590..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20912 1591..1768 -
1622930169.4870121-CDS-H-elongata_contig20912:2978..31361622930169.4870121-CDS-H-elongata_contig20912:2978..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20912 2979..3136 -
1691679307.127318-CDS-H-elongata_contig20912:2978..31361691679307.127318-CDS-H-elongata_contig20912:2978..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20912 2979..3136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20912.6036.1

>prot_H-elongata_contig20912.6036.1 ID=prot_H-elongata_contig20912.6036.1|Name=mRNA_H-elongata_contig20912.6036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MAPSRVAAAVTLLLFASTAAPASGAVHRIKMVKLSDEEFLRSKMDRFARE
RGSHGEIEEKRTIVDTPKVLLPAKASSKSAFLRGVEKFEDGIKSKMEKVF
IGRVSHLRENY*
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mRNA from alignment at H-elongata_contig20912:1507..3226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20912.6036.1 ID=mRNA_H-elongata_contig20912.6036.1|Name=mRNA_H-elongata_contig20912.6036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1720bp|location=Sequence derived from alignment at H-elongata_contig20912:1507..3226- (Himanthalia elongata Himel1 dioecious)
GTTGGGGAGCAATAAGGAGCAAGAAAAATCAAGCAGCAAAGAGAGAGTGT
GTAACTAGCTAGGCAGACTCCCCCCCAAAAGGTGATAATTATGGCTCCTT
CTCGAGTTGCCGCTGCGGTGACGTTGCTTTTGTTTGCTTCGACGGCCGCC
CCTGCCTCGGGAGCGGTTCACCGAATCAAGATGGTGAAGCTCTCCGATGA
GGAGTTCTTGAGGTCAAAGATGGACAGATTCGCGCGGGAGCGCGGAAGGT
AGGCTTTAGCTACAGTACGCTACTCTATTAAAACGACAAATGGATACCTG
ACCTTGGCCCGAGTGGTGTGATTGTACGGGGTTTGACAGTCTTTCGTGGC
GTGTTTCCTCCCCCCCCCCTCCACGAGTGTTTTATTCCTTCTCTTTCTCT
CCACGGCGAGCGTTGTTGTACTACTTCTATCATTTCCCCCCAAACACCGG
AAAGTGGAAAAGTGGAAAGTGTATTGCGGGGCATCTTGTAACCGCGGCAG
GCTTTTTTTTGTCCTTGACACATAGAGAAATCATGGCGCGCTGTCAACAG
AGCCCTAACCGTGTTTGTATCGATCGCGACTTGACTCTGGCGAACAACCC
TTCGAACCTTGCCTAACGTACATTTGACGTTGATATCTCTTAGACCCCAC
GTTGCCCAGAGTTTAATCTCGTGCCTTGGATGGGACTAAAAAACACGTGG
TCATTGGTGAACGGCCTACTAAGAGAGAAGACAAGTGATAACAACTTTCA
TTGCCCCTTGAGTTTGTAGATACTGTGATCACGTTTGTTTTTATGATGGT
TCGTTGTTGGAGCGCTTGCGCTTAAAAGTCTGTAAACAAAACTGCCAGAA
CCTTGAGAGAGAAAGAGAGACGCGCGTACCTTCCTAGATCATCCGCTGAA
TCTGTGAGGAGCGGCAATCTTTTAAAGGAGTTCGTCGCCTTAACGTAAAA
TCGCTGTAATAGTATTAATAGTAGGTTTCTGTGTCGTGTTGTGCGGTTGT
GGGATGCCGTCCTACGCAGCACCCCCCCCCCCCCCACCCCCCCCNNNNNN
NNNNGGTTTTTTTTTTTGTTGGTGGGTTTGTGGGTGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCGGAACCCCTCCTTGAGGAAAACCACCACCATGCTCC
TTCGAGCTCTCAATCTGCGGGGTTTTAGCCGTCGACACGTAACGCAAATA
TTATCGACTCTTCGCACGAATTCCTTGGCAAATGAACATATCTATCAAAA
TTCAGATAAAAAATTATAGAACGACGCCCTCCACACCCTCCTCCTTCCCC
CCCCCCCCCCCCCCCACCCCCCATAAACCCAGCAGGAAGGGGAAAAAAGA
GGGACAAATTAAATAACCCCNNNNNNNNNNATTCAAATAAAAAATTATAG
AACGCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCAATGTACCT
CGAATCAGCCACGGAGAGATCGAAGAGAAGCGGACTATCGTAGATACCCC
CAAGGTACTACTGCCGGCGAAGGCCAGCTCCAAGTCGGCCTTCCTGCGCG
GCGTGGAGAAGTTCGAAGATGGTATCAAGAGTAAGATGGAAAAGGTATTT
ATAGGTAGAGTAAGCCATCTGCGGGAGAATTATTAGATGAAGACCCGGAG
TTAGGAGACGCTGGAGGACTAGGGGCGGGAGGAGAGGCGACGACATGCCT
AGGGGTAGTACTCGGTTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig20912:1507..3226-

>mRNA_H-elongata_contig20912.6036.1 ID=mRNA_H-elongata_contig20912.6036.1|Name=mRNA_H-elongata_contig20912.6036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig20912:1507..3226- (Himanthalia elongata Himel1 dioecious)
ATGGCTCCTTCTCGAGTTGCCGCTGCGGTGACGTTGCTTTTGTTTGCTTC
GACGGCCGCCCCTGCCTCGGGAGCGGTTCACCGAATCAAGATGGTGAAGC
TCTCCGATGAGGAGTTCTTGAGGTCAAAGATGGACAGATTCGCGCGGGAG
CGCGGAAGATGGCTCCTTCTCGAGTTGCCGCTGCGGTGACGTTGCTTTTG
TTTGCTTCGACGGCCGCCCCTGCCTCGGGAGCGGTTCACCGAATCAAGAT
GGTGAAGCTCTCCGATGAGGAGTTCTTGAGGTCAAAGATGGACAGATTCG
CGCGGGAGCGCGGAAGCCACGGAGAGATCGAAGAGAAGCGGACTATCGTA
GATACCCCCAAGGTACTACTGCCGGCGAAGGCCAGCTCCAAGTCGGCCTT
CCTGCGCGGCGTGGAGAAGTTCGAAGATGGTATCAAGAGTAAGATGGAAA
AGGTATTTATAGGTAGAGTAAGCCATCTGCGGGAGAATTATTAGCCACGG
AGAGATCGAAGAGAAGCGGACTATCGTAGATACCCCCAAGGTACTACTGC
CGGCGAAGGCCAGCTCCAAGTCGGCCTTCCTGCGCGGCGTGGAGAAGTTC
GAAGATGGTATCAAGAGTAAGATGGAAAAGGTATTTATAGGTAGAGTAAG
CCATCTGCGGGAGAATTATTAG
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