mRNA_H-elongata_contig20911.6035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20911.6035.1
Unique NamemRNA_H-elongata_contig20911.6035.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.050e-39
Identity = 70/87 (80.46%), Postives = 81/87 (93.10%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRV 261
            LGMVATQRTEGLFGVAKRSGVEKKLSLCALW RLQ++ KM+++ETARLATP IT G+AFRDKHVE+F++PVK+ELL  GASQYCQ+V
Sbjct:  386 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHVSKMIAIETARLATPLITPGVAFRDKHVEEFFQPVKQELLACGASQYCQKV 472          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.150e-39
Identity = 70/87 (80.46%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRV 261
            LGMVATQRTEGLFGVAKRSGVEKKLSLCALW RLQ+L KM+++ETARL TP IT G+AFRDKHVE+F++PVK+ELL  GASQYCQ+V
Sbjct:  300 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLETPPITPGVAFRDKHVEEFFQPVKQELLACGASQYCQKV 386          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.490e-38
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRVSR 267
            LGMVATQRTEGLFGVAKRSGVEKKLSLCALW RLQ+L KM+++ETARLATP IT G+AFRDK VE+F++PVK+ELL  GASQYCQ+  R
Sbjct:  143 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLATPPITPGVAFRDKLVEEFFQPVKQELLACGASQYCQKEIR 231          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.610e-35
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRV 261
            LGMVATQRTEGLFGVAK SGVEKKLSLCALW RLQ L KM+++ETARLATP + +G+AF D HVE+F+ PVK+ELL  GASQYCQ+V
Sbjct:  771 LGMVATQRTEGLFGVAKSSGVEKKLSLCALWDRLQRLSKMIAIETARLATPPLGAGVAFGDIHVENFFRPVKQELLACGASQYCQQV 857          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.440e-29
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQY 249
            LG+VATQRTEGLF VAKRSGVE KLSLCALW RLQ L KM+++ETAR ATP + +G+AFRD HVE+F+  VK+EL   GASQ+
Sbjct:  330 LGVVATQRTEGLFEVAKRSGVENKLSLCALWDRLQRLSKMIAIETARFATPPLGAGVAFRDIHVENFFRRVKQELPARGASQF 412          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.690e-23
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRVSR 267
            +GMVATQRTEG+FGVAKRSGV KKLSLC LW +LQ + + + +E +R+AT  + + L F+ KH++  + P++ EL   GASQYCQ  +R
Sbjct:  150 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQVEAR 238          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: D8LJK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK2_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.480e-22
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRVSR 267
            +GMVATQRT  +FGV KRSGV KKLSLC LW +LQ L   + +E +R+ T  + + L F+ KH+++ + P++ EL   GASQYCQ+ +R
Sbjct:    1 MGMVATQRT--MFGVTKRSGVHKKLSLCGLWEKLQLLYHKMDIEYSRVGTRGMGAELPFQTKHLQEIFAPIREELERVGASQYCQQEAR 87          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.830e-21
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQR 258
            LGM ATQR EGLF VAKR GV K+LSLCALW  L+ +D  L++E   LATP I + L F++KH+E+F+ P+K  L   GASQ+C R
Sbjct:   35 LGMAATQRVEGLFSVAKRMGVIKQLSLCALWDVLRRVDTSLAIE---LATPAIAAQLPFQEKHMENFFTPIKEGLQRVGASQFCTR 117          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.220e-18
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYC 252
            LGMVATQRTEG+FGVAK+SG+ K LSLCALW RLQ++ + + +E  R+A+P +   LAF  KH+E+     K EL   G SQ C
Sbjct:   58 LGMVATQRTEGMFGVAKKSGIHKNLSLCALWDRLQHVYQTMDIEHGRVASPAVKLELAFPTKHLEE----AKDEL---GGSQSC 134          
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.910e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1
Query:    1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETAR 141
            LGMVATQRT GLFGVAKRSGVEKKLSLCALW RLQ L KM+++ETAR
Sbjct: 1065 LGMVATQRTGGLFGVAKRSGVEKKLSLCALWDRLQRLSKMIAIETAR 1111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KWM8_9PHAE2.050e-3980.46MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JBV0_9PHAE2.150e-3980.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC0_9PHAE1.490e-3878.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBY4_9PHAE2.610e-3575.86SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIR6_9PHAE1.440e-2969.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY17_9PHAE4.690e-2353.93SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
D8LJK2_ECTSI3.480e-2250.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Y9_9PHAE1.830e-2156.98SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JYU5_9PHAE4.220e-1854.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9T1_9PHAE2.910e-1685.11SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20911contigH-elongata_contig20911:3538..4027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_002310.1
Exons2
Model size267
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20911.6035.1prot_H-elongata_contig20911.6035.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20911 3538..4021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.3529-CDS-H-elongata_contig20911:3537..36641622930169.3529-CDS-H-elongata_contig20911:3537..3664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20911 3538..3664 -
1691679307.054314-CDS-H-elongata_contig20911:3537..36641691679307.054314-CDS-H-elongata_contig20911:3537..3664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20911 3538..3664 -
1622930169.3663473-CDS-H-elongata_contig20911:3887..40211622930169.3663473-CDS-H-elongata_contig20911:3887..4021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20911 3888..4021 -
1691679307.073831-CDS-H-elongata_contig20911:3887..40211691679307.073831-CDS-H-elongata_contig20911:3887..4021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20911 3888..4021 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.3802478-UTR-H-elongata_contig20911:4021..40271622930169.3802478-UTR-H-elongata_contig20911:4021..4027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20911 4022..4027 -
1691679307.0883865-UTR-H-elongata_contig20911:4021..40271691679307.0883865-UTR-H-elongata_contig20911:4021..4027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20911 4022..4027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20911.6035.1

>prot_H-elongata_contig20911.6035.1 ID=prot_H-elongata_contig20911.6035.1|Name=mRNA_H-elongata_contig20911.6035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPH
ITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRVSR
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mRNA from alignment at H-elongata_contig20911:3538..4027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20911.6035.1 ID=mRNA_H-elongata_contig20911.6035.1|Name=mRNA_H-elongata_contig20911.6035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=490bp|location=Sequence derived from alignment at H-elongata_contig20911:3538..4027- (Himanthalia elongata Himel1 dioecious)
CTAGGAATGGTTGCCACTCAGCGTACGGAAGGTTTATTCGGGGTGGCGAA GCGCTCGGGTGTCGAAAAGAAGCTCTCCCTGTGCGCTCTTTGGGGTCGCC TGCAAAACCTCGACAAGATGCTTTCCTTAGAGACTGCGAGGTGGGTTTTT TCCTCATTTTTCTGTGTCACCCGTGGCAGGTGACTACCAGTACGTTTCGC TTCCTAGGGTATCTCTGTGTGTTGAACATCACGCACCTTTCTCTTTGCCG ACAGCGACAGCTACATATACTCATGACAGCCTACATTGTGTCCGAATGTC TCTGGCACCACTGCAACGTCATGTGACAATCACGTGGTACTGTGTTTCAT GCCATGCATGCAGGTTAGCGACCCCTCATATTACCTCTGGGCTGGCTTTC CGGGACAAGCACGTCGAGGATTTCTACGAACCCGTGAAGCGAGAGCTTCT AGTCTATGGTGCTAGCCAGTACTGCCAGCGAGTGAGTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig20911:3538..4027-

>mRNA_H-elongata_contig20911.6035.1 ID=mRNA_H-elongata_contig20911.6035.1|Name=mRNA_H-elongata_contig20911.6035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig20911:3538..4027- (Himanthalia elongata Himel1 dioecious)
ATGGTTGCCACTCAGCGTACGGAAGGTTTATTCGGGGTGGCGAAGCGCTC
GGGTGTCGAAAAGAAGCTCTCCCTGTGCGCTCTTTGGGGTCGCCTGCAAA
ACCTCGACAAGATGCTTTCCTTAGAGACTGCGAGATGGTTGCCACTCAGC
GTACGGAAGGTTTATTCGGGGTGGCGAAGCGCTCGGGTGTCGAAAAGAAG
CTCTCCCTGTGCGCTCTTTGGGGTCGCCTGCAAAACCTCGACAAGATGCT
TTCCTTAGAGACTGCGAGGTTAGCGACCCCTCATATTACCTCTGGGCTGG
CTTTCCGGGACAAGCACGTCGAGGATTTCTACGAACCCGTGAAGCGAGAG
CTTCTAGTCTATGGTGCTAGCCAGTACTGCCAGCGAGTGAGTCGTGTTAG
CGACCCCTCATATTACCTCTGGGCTGGCTTTCCGGGACAAGCACGTCGAG
GATTTCTACGAACCCGTGAAGCGAGAGCTTCTAGTCTATGGTGCTAGCCA
GTACTGCCAGCGAGTGAGTCGT
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