mRNA_H-elongata_contig20911.6035.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.050e-39 Identity = 70/87 (80.46%), Postives = 81/87 (93.10%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRV 261
LGMVATQRTEGLFGVAKRSGVEKKLSLCALW RLQ++ KM+++ETARLATP IT G+AFRDKHVE+F++PVK+ELL GASQYCQ+V
Sbjct: 386 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHVSKMIAIETARLATPLITPGVAFRDKHVEEFFQPVKQELLACGASQYCQKV 472
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.150e-39 Identity = 70/87 (80.46%), Postives = 80/87 (91.95%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRV 261
LGMVATQRTEGLFGVAKRSGVEKKLSLCALW RLQ+L KM+++ETARL TP IT G+AFRDKHVE+F++PVK+ELL GASQYCQ+V
Sbjct: 300 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLETPPITPGVAFRDKHVEEFFQPVKQELLACGASQYCQKV 386
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE) HSP 1 Score: 143 bits (361), Expect = 1.490e-38 Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRVSR 267
LGMVATQRTEGLFGVAKRSGVEKKLSLCALW RLQ+L KM+++ETARLATP IT G+AFRDK VE+F++PVK+ELL GASQYCQ+ R
Sbjct: 143 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLATPPITPGVAFRDKLVEEFFQPVKQELLACGASQYCQKEIR 231
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 136 bits (342), Expect = 2.610e-35 Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRV 261
LGMVATQRTEGLFGVAK SGVEKKLSLCALW RLQ L KM+++ETARLATP + +G+AF D HVE+F+ PVK+ELL GASQYCQ+V
Sbjct: 771 LGMVATQRTEGLFGVAKSSGVEKKLSLCALWDRLQRLSKMIAIETARLATPPLGAGVAFGDIHVENFFRPVKQELLACGASQYCQQV 857
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR6_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.440e-29 Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQY 249
LG+VATQRTEGLF VAKRSGVE KLSLCALW RLQ L KM+++ETAR ATP + +G+AFRD HVE+F+ VK+EL GASQ+
Sbjct: 330 LGVVATQRTEGLFEVAKRSGVENKLSLCALWDRLQRLSKMIAIETARFATPPLGAGVAFRDIHVENFFRRVKQELPARGASQF 412
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 101 bits (251), Expect = 4.690e-23 Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRVSR 267
+GMVATQRTEG+FGVAKRSGV KKLSLC LW +LQ + + + +E +R+AT + + L F+ KH++ + P++ EL GASQYCQ +R
Sbjct: 150 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQVEAR 238
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: D8LJK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK2_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 3.480e-22 Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQRVSR 267
+GMVATQRT +FGV KRSGV KKLSLC LW +LQ L + +E +R+ T + + L F+ KH+++ + P++ EL GASQYCQ+ +R
Sbjct: 1 MGMVATQRT--MFGVTKRSGVHKKLSLCGLWEKLQLLYHKMDIEYSRVGTRGMGAELPFQTKHLQEIFAPIREELERVGASQYCQQEAR 87
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.830e-21 Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYCQR 258
LGM ATQR EGLF VAKR GV K+LSLCALW L+ +D L++E LATP I + L F++KH+E+F+ P+K L GASQ+C R
Sbjct: 35 LGMAATQRVEGLFSVAKRMGVIKQLSLCALWDVLRRVDTSLAIE---LATPAIAAQLPFQEKHMENFFTPIKEGLQRVGASQFCTR 117
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 4.220e-18 Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHITSGLAFRDKHVEDFYEPVKRELLVYGASQYC 252
LGMVATQRTEG+FGVAK+SG+ K LSLCALW RLQ++ + + +E R+A+P + LAF KH+E+ K EL G SQ C
Sbjct: 58 LGMVATQRTEGMFGVAKKSGIHKNLSLCALWDRLQHVYQTMDIEHGRVASPAVKLELAFPTKHLEE----AKDEL---GGSQSC 134
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.910e-16 Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1
Query: 1 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETAR 141
LGMVATQRT GLFGVAKRSGVEKKLSLCALW RLQ L KM+++ETAR
Sbjct: 1065 LGMVATQRTGGLFGVAKRSGVEKKLSLCALWDRLQRLSKMIAIETAR 1111 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20911.6035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20911.6035.1 >prot_H-elongata_contig20911.6035.1 ID=prot_H-elongata_contig20911.6035.1|Name=mRNA_H-elongata_contig20911.6035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MVATQRTEGLFGVAKRSGVEKKLSLCALWGRLQNLDKMLSLETARLATPHback to top mRNA from alignment at H-elongata_contig20911:3538..4027- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20911.6035.1 ID=mRNA_H-elongata_contig20911.6035.1|Name=mRNA_H-elongata_contig20911.6035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=490bp|location=Sequence derived from alignment at H-elongata_contig20911:3538..4027- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20911:3538..4027- >mRNA_H-elongata_contig20911.6035.1 ID=mRNA_H-elongata_contig20911.6035.1|Name=mRNA_H-elongata_contig20911.6035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig20911:3538..4027- (Himanthalia elongata Himel1 dioecious)back to top |