mRNA_H-elongata_contig2091.6034.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2091.6034.1
Unique NamemRNA_H-elongata_contig2091.6034.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: D7G7W1_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7W1_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 2.240e-111
Identity = 181/314 (57.64%), Postives = 231/314 (73.57%), Query Frame = 1
Query:    1 MLEVLEEDHEFDLAGSARVDVLVSSIQPKQASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLLSSPEAYHAMIESKGQDLEERFCLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDP------GVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            MLEV++EDHEFDLAGSAR+DVLVS+I+P+QASQ++K+LS LLPL   KL+HL+R+RSS+ P TG R LQVLLS P+ YHA+ E+K +++ ER+ L PT+HAVP+LEPRTR QF +G SAWPM+FHHSTSEEARRAAR+IPEQ+ L+A  FMR+AL DA+ GR Q GG+  VGAV+VDP        GRVVATA++ERQ++RDE P SMR+HPLHHAVMLCVQ VGR + AG+   +  ++  + +A               G + G  R   G+E + C D       VV++LS  QYLCTG DLY+T+EPCLM
Sbjct:    1 MLEVVQEDHEFDLAGSARLDVLVSAIKPRQASQVVKDLSELLPLERAKLNHLKRIRSSQHPETG-RLLQVLLSPPDMYHALDEAKRKEIVERYGLEPTVHAVPKLEPRTRAQFLSGGSAWPMIFHHSTSEEARRAARVIPEQDALDAIGFMRDALVDAETGRQQNGGRPTVGAVLVDPLGGCGGRRGRVVATASRERQKVRDEEPASMRDHPLHHAVMLCVQGVGRALAAGSRQEKVARKQEEDSA---------------GGKLGKEREGKGSESL-CSDAD-PPGGVVEVLSPEQYLCTGFDLYVTREPCLM 296          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: A0A3B4CVR8_PYGNA (Adenosine deaminase tRNA specific 3 n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4CVR8_PYGNA)

HSP 1 Score: 104 bits (260), Expect = 4.030e-22
Identity = 92/318 (28.93%), Postives = 145/318 (45.60%), Query Frame = 1
Query:    1 MLEVLEEDHEFDLAGSARVDVLVSSIQPK-QASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLL------SSPEAYHAMIES--KGQDLEERFCLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQ-YLCTGLDLYITQEPCLM 924
            +L VL ++   D   +  +D   + I  K + S+++KEL+V+ PL DL+  H++RVR+ KD       L+V++      S  E+  + +      + ++ R    P +  +P   P TR QFE     WP  FH      +    ++    E      +M  A++ A+ G   A G  AVGAV+VDP  G++VA     RQ            HPLHHAVM+C+  V      G      E E +      +P            + + T   +D ++E       G   S  K + +GQ Y+CTG +LY+T+EPC+M
Sbjct:   20 VLPVLSDEQSRD---TKLLDAYAAPITEKRETSRLVKELAVVYPLPDLQ--HIKRVRARKDK-NAPHPLEVIVCLASDVSGLESQRSTLADLLSSKTIDSRGLGEPFLVQIPASPPLTRPQFERASKHWPTSFHEDKQVTSALRGQLFSSSEKAKMGEYMNAAIQAARSGH--ALGMDAVGAVIVDPQSGQIVAVGHDCRQG----------THPLHHAVMVCIDLVAYTQGGG----AYEYEKYPACRYSVP------------ESQVTTSHDDLSKE-------GNHCSSDKAMENGQLYICTGYELYVTREPCVM 296          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: A0A1S3FP72_DIPOR (probable inactive tRNA-specific adenosine deaminase-like protein 3 n=4 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3FP72_DIPOR)

HSP 1 Score: 102 bits (255), Expect = 3.240e-21
Identity = 99/306 (32.35%), Postives = 140/306 (45.75%), Query Frame = 1
Query:   22 DHEFDLAGSARVDVLVSSIQPKQASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLL--SSPEAYHAMIES--KGQDLEERFCLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSND-GAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            D E  LA +A V      +  +Q S+++KE+S + PL      HL+RVR S+D  +G+ +L++LL  + P A    +        ++ R    P +  VP   P TREQFE  +S WP  FH      +  A ++   QE       M +A++ AQ  +  A G  AVGAVVVDP  GRV+AT     Q             PL HAVM+C+  V +    G      + +P+  A S  P    L     +G + G +R  D   EE   P                 Y+CTG DLY+T+EPC M
Sbjct:   78 DVELVLAYAAPV------LDKRQTSRLLKEISAVYPLP--AQPHLKRVRPSRDA-SGSHALEMLLCLAGPAAGTCSLAELLPKPAVDPRGLGPPFLVPVPARPPLTREQFEEARSHWPTSFHEDKQVTSALAGQLFSAQERAAMQRHMEQAIRAAQ--QALARGLQAVGAVVVDPATGRVLATGHDCSQVAS----------PLLHAVMVCIDLVAQ----GQGRGTYDFKPYP-ACSFTPATATL-----KGPQAGRVRKLDEDKEEDGLP-----------------YVCTGYDLYVTREPCAM 335          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: UPI001EAFFB27 (probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 n=4 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFFB27)

HSP 1 Score: 101 bits (252), Expect = 4.190e-21
Identity = 98/314 (31.21%), Postives = 136/314 (43.31%), Query Frame = 1
Query:    7 EVLEEDHEFDLAGSARVDVLVSSIQPKQ-ASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLLSSPEAYH-------AMIESKGQDLEERFCLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            E + ED   D   ++ VD  V  IQ K+  + I+K+LS  LPL +L   HL+RVRS K        LQV++ S  A         A I SK   L +     P +  VPQ  P TR Q++     WP+ FH      +  + +    +EV    T M+ AL  A++ R +  GQAAVGAVVVDP    V+A+A   R+ +            L HAVM+ V  V      G  +T      +++                   +  T  S DG+ +                   G YLCTG DLY+T EPC+M
Sbjct:   24 EAVLEDRYTD--PTSLVDAYVCVIQDKKLTAHIVKKLSCDLPLTNLM--HLKRVRSHKAK--DAAQLQVIICSKSATEDSSVDILASIISKFPALGK-----PVLVKVPQNPPLTRNQYQDASKYWPVSFHEDKRVTSLLSGQFFSSREVRTIHTHMKTALHLAKVAREK--GQAAVGAVVVDPSTNTVIASAHDLRRGLNS----------LQHAVMVAVDLVAHGQGGGMWDTHDNDLKYRSTP-----------------DTATHPSTDGSTKT------------------GPYLCTGYDLYVTSEPCIM 279          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: A0A8C7Y795_9TELE (Adenosine deaminase tRNA specific 3 n=2 Tax=Oryzias TaxID=8089 RepID=A0A8C7Y795_9TELE)

HSP 1 Score: 102 bits (253), Expect = 4.370e-21
Identity = 93/289 (32.18%), Postives = 129/289 (44.64%), Query Frame = 1
Query:   85 KQASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRS-LQVLL----SSPE----AYHAMIESKGQDLEERFCLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            K+ S+II EL+ L PL  L+  HL+RVR+ KD   G+++ L+VLL     +P+    +  +++ S G   E      P +  +P   P TR QFE     W   FH            +   +E     T+M  AL  AQ  +    G  AVGAVVVDP V R++A     R           R+HPLHHAVM+C+  V R    GN   +     +      LP       KA + QE      ++GA E                     Y+CTG DLY+T+EPC+M
Sbjct:   55 KETSRIIAELNSLYPLNGLQ--HLKRVRACKDK--GSQNPLEVLLCLVSEAPDVKAVSKDSLLPSSGAKWEG--LGEPFVVKIPARPPLTRPQFELASQHWSTAFHEDKHVTVALRGELFSTKEKAKMHTYMTSALTAAQAAKEL--GMEAVGAVVVDPEVDRIIAVGHDCR-----------RDHPLHHAVMVCIDLVARSQGGGNYCFDR----YTACQFSLP-------KAAKNQEMSN--QSEGAAEP--------------------YICTGYDLYVTREPCVM 291          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: A0A8C8Z6C4_PROSS (Adenosine deaminase tRNA specific 3 n=4 Tax=Lemuriformes TaxID=376915 RepID=A0A8C8Z6C4_PROSS)

HSP 1 Score: 101 bits (251), Expect = 7.020e-21
Identity = 103/316 (32.59%), Postives = 136/316 (43.04%), Query Frame = 1
Query:   22 DHEFDLAGSARVDVLVSSIQPKQASQIIKELSVLLPLGDLKLDHLRRVRSSKD---------------PYTGTRSLQVLLSSPEAYHAMIESKGQDLEERFCLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            D E  LA +A V      +  +Q S+++KE+S + PL      HL+RVR S+D               P TGT SL  LL  P      ++  G          P +  VP   P TR QFE  ++ WP  FH      +  A R+  EQE     + M  A++ A+  R  A G  AVGAVVVDP  G V+AT         D S  +    PL HAVM+CV  V R    G      +  PF   +        +P  A +  + GT+R  D  +E   P                 Y+CTG DLYIT+EPC M
Sbjct:   39 DVELVLAYAAPV------LDKRQTSRLLKEVSAVYPLP--AQPHLKRVRPSRDTRGPHALEMLLCLAGPATGTCSLAELLPWPA-----VDPHGLG-------QPFLVPVPARPPLTRGQFEKARAHWPTSFHEDKQVTSALAGRLFSEQERAAMQSHMERAVQAAR--RAAAQGLRAVGAVVVDPASGHVLATG-------HDCSHAAS---PLLHAVMVCVDLVAR----GQGRGTYDFRPFPACSF-------MPLAASQAVQVGTVRKLD-EDEDSLP-----------------YVCTGYDLYITREPCAM 293          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: A0A2G8LBC6_STIJA (Putative inactive tRNA-specific adenosine deaminase-like protein 3-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LBC6_STIJA)

HSP 1 Score: 99.8 bits (247), Expect = 3.620e-20
Identity = 86/310 (27.74%), Postives = 138/310 (44.52%), Query Frame = 1
Query:   85 KQASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLLSSPEAYHAMIESKGQDLEERFCLSP----------TMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENT-----------------EAEKEPFKTAASRLPRDGRLPGKAGRGQ---EKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            K+ S++IK+L  L PL    L H++RV+SS+      + LQ++L +P+      ++   +++E FC  P          T   VP+ +P+TR QF   Q  WP  FH               + EV    ++M  AL  A+ G  +  G  ++GAV+V+P    ++A+    RQ         + ++PL HAVM+C+  V R    G  N                  + +    +TA    P       + G  +   +K T   +D  +     ++    N  V+  S   YLCTGL+LY+TQEPC+M
Sbjct:   33 KETSRLIKQLGELFPL--TSLSHVKRVKSSEK--IEGKQLQIILCTPDQLEN--DAPCTNIDEIFCTLPDFNKSGLGKLTCSKVPEYQPKTRAQFIEAQKYWPTAFHEDKELSRLLDGTFFSKTEVERINSYMNTALSIARRGGKE--GALSIGAVIVNPDSRDIIASCYDIRQ---------VSSNPLRHAVMVCIDLVARSQGGGAWNIHNTPGFYWKSPTCEALIKPDSSSRETAHHECPEAESSTNETGNTRHSPQKSTALVDDADQSNEPKNLKRKHNDEVQTSS---YLCTGLELYVTQEPCVM 322          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: UPI0001CBBE4D (probable inactive tRNA-specific adenosine deaminase-like protein 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBBE4D)

HSP 1 Score: 99.8 bits (247), Expect = 3.620e-20
Identity = 90/314 (28.66%), Postives = 140/314 (44.59%), Query Frame = 1
Query:   55 VDVLVSSIQPKQ-ASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLLSSPEAYHAMIESKGQDLEERF---------CLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAG----------NENTE---AEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDGAEE-VRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            V++L +SI  +Q  SQI+K LS L PL  L   HL+RV+S K       +LQ+++      H+  +SK   L++ F            P +    +  PRTR+QF+     WP  FH         A ++    E      +M +A+  A+ G+ +  GQA +GAV+VDP    V+A              R++  HP  HA M+C+  V      G          N+N++   A +E  +++ S +         +  G  K     N   E+ +    V   + +++     G YLCTG DLYIT EPC+M
Sbjct:   34 VNILAASITNRQDTSQILKSLSELFPLNGLH--HLKRVKSCKGETKNDVALQIIICLASDQHS--QSKHVSLKQIFGDKPFAGKGLGPPFLTKAAKFPPRTRQQFKDASIYWPTSFHEDKHLTRAIAGQLFTVSEKHKIQCYMEKAVAVAKTGKER--GQAPIGAVIVDPINEEVIAVC---------HDLRNVGRHPFFHAAMICIDLVAASQGGGTYKYNEPGFYNKNSQYNSANQECKESSTSDV--------NSISGNHKDPCACNTNGEDGISTQQVTTDNIALLSGDKSGPYLCTGYDLYITHEPCIM 324          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: A0A6P4Y6D1_BRABE (probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y6D1_BRABE)

HSP 1 Score: 99.4 bits (246), Expect = 5.400e-20
Identity = 94/308 (30.52%), Postives = 127/308 (41.23%), Query Frame = 1
Query:   55 VDVLVSSI-QPKQASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLLSSPEAYHAMIESKGQDLEERFCLS----PTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAG------------NENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDG-AEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            +DV V+ +   KQ S +IKE+S   PL DL   HL+RV+S K     T ++Q+LL    +  +         E  F       P +  V      TR Q+E     WP  FH   S E R        +E+ +   +M+ AL+ AQ  +H   G   VGAVVVDP    VV      R             +PLHHAVM+ V  V      G             E TE+  +  K  A            + +  E GT R +    +  R  D      S     + G YLCTG DLY+T+EPC+M
Sbjct:   53 IDVYVAPVLDKKQTSHLIKEVSSRFPLPDLL--HLKRVKSQKSGNKET-TIQILLCKAPSEDSSSPDSEDPTENGFRFDGLGKPFLTKVAVRPAITRRQYEHCAQYWPTAFHEDKSLERRLKGEFFSCEELQSIQKYMKRALQAAQHAKHT--GMEPVGAVVVDPVADEVVGVGHDLRHA----------GNPLHHAVMVAVDTVASSQGGGYWDHRGPGLYWREEQTESSNDDSKEVADC----------SSKRTEAGTDRKDTKLVDSTRTCDTSEEGQS-----NDGPYLCTGYDLYVTREPCIM 330          
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Match: H0X8K9_OTOGA (Adenosine deaminase tRNA specific 3 n=2 Tax=Otolemur garnettii TaxID=30611 RepID=H0X8K9_OTOGA)

HSP 1 Score: 97.8 bits (242), Expect = 1.220e-19
Identity = 99/305 (32.46%), Postives = 136/305 (44.59%), Query Frame = 1
Query:   22 DHEFDLAGSARVDVLVSSIQPKQASQIIKELSVLLPLGDLKLDHLRRVRSSKDPYTGTRSLQVLLSSPEAYHAMIESKG----QDLEERFCLSPTMHAVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTFMREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPRSMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLPGKAGRGQEKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLYITQEPCLM 924
            D E  LA +A V      +  +Q S+++KE+S + PL      HL+RVR S+D  +G  +L++LL   +A   M           ++ R    P +  VP   P TR QFE  ++ WP  FH      +  A ++   QE     + M  A+K AQ    Q  G  AVGAVVVDP  G V+AT         D S  SM + PL HAVM+CV  V +    G      +  PF   +         P  A +    GT+R  D  +E   P                 Y+CTG DLY+T+EPC M
Sbjct:   37 DVELVLAYAAPV------LDKRQTSRLLKEVSAVYPLPSQP--HLKRVRPSQDA-SGPHALELLLCLADAAPGMRSLADLLPHPAVDPRGLGQPFLVPVPARPPLTRGQFEKARTHWPTSFHEDKQVTSALAGQLFSAQERAAMESHMERAVKAAQWAAAQ--GLRAVGAVVVDPASGCVLATG-------HDCS--SMAS-PLLHAVMVCVDLVAQ----GQGRGTYDFRPFPACSF-------TPAAASQAIRVGTVRKLD-EDEDDLP-----------------YVCTGYDLYVTREPCTM 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2091.6034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7W1_ECTSI2.240e-11157.64CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A3B4CVR8_PYGNA4.030e-2228.93Adenosine deaminase tRNA specific 3 n=2 Tax=Serras... [more]
A0A1S3FP72_DIPOR3.240e-2132.35probable inactive tRNA-specific adenosine deaminas... [more]
UPI001EAFFB274.190e-2131.21probable inactive tRNA-specific adenosine deaminas... [more]
A0A8C7Y795_9TELE4.370e-2132.18Adenosine deaminase tRNA specific 3 n=2 Tax=Oryzia... [more]
A0A8C8Z6C4_PROSS7.020e-2132.59Adenosine deaminase tRNA specific 3 n=4 Tax=Lemuri... [more]
A0A2G8LBC6_STIJA3.620e-2027.74Putative inactive tRNA-specific adenosine deaminas... [more]
UPI0001CBBE4D3.620e-2028.66probable inactive tRNA-specific adenosine deaminas... [more]
A0A6P4Y6D1_BRABE5.400e-2030.52probable inactive tRNA-specific adenosine deaminas... [more]
H0X8K9_OTOGA1.220e-1932.46Adenosine deaminase tRNA specific 3 n=2 Tax=Otolem... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2091contigH-elongata_contig2091:12434..14571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.3
Seed ortholog evalue1.8e-90
Seed eggNOG ortholog2880.D7G7W1
Preferred nameADAT3
KEGG koko:K07117,ko:K15442
GOsGO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494
EggNOG free text desc.RNA modification
EggNOG OGsCOG0590@1,KOG2771@2759
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size927
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2091.6034.1prot_H-elongata_contig2091.6034.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2091 12434..14571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.2515423-CDS-H-elongata_contig2091:12433..124631622930169.2515423-CDS-H-elongata_contig2091:12433..12463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 12434..12463 +
1691679306.992935-CDS-H-elongata_contig2091:12433..124631691679306.992935-CDS-H-elongata_contig2091:12433..12463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 12434..12463 +
1622930169.2656085-CDS-H-elongata_contig2091:13003..131171622930169.2656085-CDS-H-elongata_contig2091:13003..13117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 13004..13117 +
1691679307.0139828-CDS-H-elongata_contig2091:13003..131171691679307.0139828-CDS-H-elongata_contig2091:13003..13117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 13004..13117 +
1622930169.283809-CDS-H-elongata_contig2091:13404..136401622930169.283809-CDS-H-elongata_contig2091:13404..13640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 13405..13640 +
1691679307.0267112-CDS-H-elongata_contig2091:13404..136401691679307.0267112-CDS-H-elongata_contig2091:13404..13640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 13405..13640 +
1622930169.3022907-CDS-H-elongata_contig2091:14024..145711622930169.3022907-CDS-H-elongata_contig2091:14024..14571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 14025..14571 +
1691679307.0372164-CDS-H-elongata_contig2091:14024..145711691679307.0372164-CDS-H-elongata_contig2091:14024..14571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2091 14025..14571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2091.6034.1

>prot_H-elongata_contig2091.6034.1 ID=prot_H-elongata_contig2091.6034.1|Name=mRNA_H-elongata_contig2091.6034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
MLEVLEEDHEFDLAGSARVDVLVSSIQPKQASQIIKELSVLLPLGDLKLD
HLRRVRSSKDPYTGTRSLQVLLSSPEAYHAMIESKGQDLEERFCLSPTMH
AVPQLEPRTREQFETGQSAWPMVFHHSTSEEARRAARIIPEQEVLNATTF
MREALKDAQIGRHQAGGQAAVGAVVVDPGVGRVVATAAQERQRIRDESPR
SMRNHPLHHAVMLCVQQVGRVICAGNENTEAEKEPFKTAASRLPRDGRLP
GKAGRGQEKGTIRSNDGAEEVRCPDVFGGSNSVVKILSHGQYLCTGLDLY
ITQEPCLM*
back to top

mRNA from alignment at H-elongata_contig2091:12434..14571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2091.6034.1 ID=mRNA_H-elongata_contig2091.6034.1|Name=mRNA_H-elongata_contig2091.6034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2138bp|location=Sequence derived from alignment at H-elongata_contig2091:12434..14571+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGAGGTCCTAGAGGAGGATCATGAGGTATATTTAGTCTTCATAAC TCAAAGTTTGTGGTTGCATTATTTCTGTGGGAATGCTCGTTCTCATTTGA TACGATATAAATTTGCTCAAACAAATGGTTAGGGCCTTCTTAGCCCCGTG AGAGGCATATTTGTCGGATTCTTGACACTGCGTCAAGGCGTCTTTTTGGA AAATATACTAGTTTTAGAATTGGTATGTGTCCTTGACGCGTCTGTCGAGG GGTTCAACACTTGTCAACATACAACTTTAGTGAGAGGTGGAGTCCAGGGG ACCAGCTATTGTCAGGTTCGAATGTGTACATTACTACCTCTGAAAACAAA ATCGTAACATGTGACTAATCGTGTTCCCCAATCGTAAATTGATCGGGTCA ACGGTATAATGTCGGGGATCACATCATTATCCCGTACATCTACATTATTA ATTATATGGGGACGCCTAACCGTAACCGTAACCCTAAGAAAAAAGGCTGT ACCTGTACAGTACAGTACACTACAGTACAGTACCATAAATATTTCCCATT CGTGCAATTCTATTTCCAAGTTTGACCTCGCAGGATCCGCTCGAGTTGAC GTGCTGGTTTCTTCCATCCAGCCCAAACAAGCCAGCCAGATTATCAAGGA GCTTTCGGTGCTGCTTCCTCTGGGGGATCTTAAGGTCAGGTCCACTGTTT CCTTATCCAAGAGCTAGGTCTCGACCAGCTGACCACGACGATCGTCTAGG GAAAACAAAAATAGTTAAAACATCTGAACTCTTTGGTAATCATAAATGTT CACGAGGTGGAGACAAGGCGTTATCGGCCATATAACCGTAACCTTCAGAT CCGAGGTATGTGTAATGTGTGGTGCATCCTCAACCGTGCAGAGGCAAACC ATGAAGAACTTCTTGTACTGAAAAACGATCACCAACCGGCACGCCCGTCC TCACAACACCAACACCTTCAGCTTGATCATCTCAGACGAGTGCGATCCTC AAAGGACCCCTACACCGGTACGAGGTCGCTCCAGGTGCTCCTATCTTCCC CAGAAGCTTACCACGCCATGATCGAGTCCAAAGGACAAGATCTTGAGGAG CGTTTTTGCCTCTCACCCACAATGCACGCTGTACCCCAGCTGGAGCCTCG AACGCGTGAGCAGTTCGAGACAGGACAGTCGGCGTGGCCGATGGTTTTCC ACCACAGGTAGTAATAATTATACATTGAACTTACTATGGGGAACACAATT AATCACATGTGACGATTTTCACGGTGCTAAGAGGCCGTGGGTATTCGGAG GGTTGGAATGAGGTCATGTTTTTTTTTTAAATAATTAACGTCTACTTGTA CGCACATGACCATCCTTTGAGCGGCGCGCTTAAGACACCTGTTTTTTCTT CTCGCCCAAGCTAGTAAGACGTGGTTTGGACATCTAAAAGGGCCTGGGTC GGTGCAGGCGAGGCCCTTGTCTACTTGGTCTTCTACCGTCAAAGCGATGG CTTGACATGGCATATAACATGACATATTTCATAAGCGCGACATAATCCGC ATAATCTGCAATGAATCCTGTCGTTTATGAGTCGTGCGCAGCACATCTGA GGAAGCTCGCCGGGCCGCGAGAATCATCCCCGAGCAAGAAGTTCTGAACG CGACCACCTTCATGCGAGAAGCTCTCAAAGACGCACAGATTGGGCGGCAC CAGGCGGGCGGCCAAGCAGCCGTCGGGGCGGTAGTGGTCGACCCCGGTGT GGGAAGGGTCGTAGCAACGGCGGCGCAAGAGAGACAACGCATTCGCGACG AGTCGCCGCGGTCGATGCGGAACCACCCGCTACACCACGCTGTAATGCTC TGCGTTCAACAGGTGGGGCGCGTGATTTGTGCTGGGAATGAAAATACCGA GGCCGAGAAAGAACCCTTTAAGACAGCGGCGAGCAGACTCCCAAGAGATG GGAGACTCCCAGGAAAGGCGGGGAGGGGACAGGAGAAGGGGACGATTCGG AGCAACGACGGTGCTGAGGAAGTGCGTTGTCCCGACGTTTTCGGTGGCTC TAATTCCGTGGTAAAAATTCTATCACACGGACAATACTTGTGTACGGGCT TGGACTTGTACATTACCCAGGAGCCCTGCCTCATGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig2091:12434..14571+

>mRNA_H-elongata_contig2091.6034.1 ID=mRNA_H-elongata_contig2091.6034.1|Name=mRNA_H-elongata_contig2091.6034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig2091:12434..14571+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGAGGTCCTAGAGGAGGATCATGAGATGTTGGAGGTCCTAGAGGA
GGATCATGAGTTTGACCTCGCAGGATCCGCTCGAGTTGACGTGCTGGTTT
CTTCCATCCAGCCCAAACAAGCCAGCCAGATTATCAAGGAGCTTTCGGTG
CTGCTTCCTCTGGGGGATCTTAAGTTTGACCTCGCAGGATCCGCTCGAGT
TGACGTGCTGGTTTCTTCCATCCAGCCCAAACAAGCCAGCCAGATTATCA
AGGAGCTTTCGGTGCTGCTTCCTCTGGGGGATCTTAAGCTTGATCATCTC
AGACGAGTGCGATCCTCAAAGGACCCCTACACCGGTACGAGGTCGCTCCA
GGTGCTCCTATCTTCCCCAGAAGCTTACCACGCCATGATCGAGTCCAAAG
GACAAGATCTTGAGGAGCGTTTTTGCCTCTCACCCACAATGCACGCTGTA
CCCCAGCTGGAGCCTCGAACGCGTGAGCAGTTCGAGACAGGACAGTCGGC
GTGGCCGATGGTTTTCCACCACAGCTTGATCATCTCAGACGAGTGCGATC
CTCAAAGGACCCCTACACCGGTACGAGGTCGCTCCAGGTGCTCCTATCTT
CCCCAGAAGCTTACCACGCCATGATCGAGTCCAAAGGACAAGATCTTGAG
GAGCGTTTTTGCCTCTCACCCACAATGCACGCTGTACCCCAGCTGGAGCC
TCGAACGCGTGAGCAGTTCGAGACAGGACAGTCGGCGTGGCCGATGGTTT
TCCACCACAGCACATCTGAGGAAGCTCGCCGGGCCGCGAGAATCATCCCC
GAGCAAGAAGTTCTGAACGCGACCACCTTCATGCGAGAAGCTCTCAAAGA
CGCACAGATTGGGCGGCACCAGGCGGGCGGCCAAGCAGCCGTCGGGGCGG
TAGTGGTCGACCCCGGTGTGGGAAGGGTCGTAGCAACGGCGGCGCAAGAG
AGACAACGCATTCGCGACGAGTCGCCGCGGTCGATGCGGAACCACCCGCT
ACACCACGCTGTAATGCTCTGCGTTCAACAGGTGGGGCGCGTGATTTGTG
CTGGGAATGAAAATACCGAGGCCGAGAAAGAACCCTTTAAGACAGCGGCG
AGCAGACTCCCAAGAGATGGGAGACTCCCAGGAAAGGCGGGGAGGGGACA
GGAGAAGGGGACGATTCGGAGCAACGACGGTGCTGAGGAAGTGCGTTGTC
CCGACGTTTTCGGTGGCTCTAATTCCGTGGTAAAAATTCTATCACACGGA
CAATACTTGTGTACGGGCTTGGACTTGTACATTACCCAGGAGCCCTGCCT
CATGTGACACATCTGAGGAAGCTCGCCGGGCCGCGAGAATCATCCCCGAG
CAAGAAGTTCTGAACGCGACCACCTTCATGCGAGAAGCTCTCAAAGACGC
ACAGATTGGGCGGCACCAGGCGGGCGGCCAAGCAGCCGTCGGGGCGGTAG
TGGTCGACCCCGGTGTGGGAAGGGTCGTAGCAACGGCGGCGCAAGAGAGA
CAACGCATTCGCGACGAGTCGCCGCGGTCGATGCGGAACCACCCGCTACA
CCACGCTGTAATGCTCTGCGTTCAACAGGTGGGGCGCGTGATTTGTGCTG
GGAATGAAAATACCGAGGCCGAGAAAGAACCCTTTAAGACAGCGGCGAGC
AGACTCCCAAGAGATGGGAGACTCCCAGGAAAGGCGGGGAGGGGACAGGA
GAAGGGGACGATTCGGAGCAACGACGGTGCTGAGGAAGTGCGTTGTCCCG
ACGTTTTCGGTGGCTCTAATTCCGTGGTAAAAATTCTATCACACGGACAA
TACTTGTGTACGGGCTTGGACTTGTACATTACCCAGGAGCCCTGCCTCAT
GTGA
back to top