mRNA_H-elongata_contig2091.6033.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig2091.6033.1 vs. uniprot
Match: D7G7W0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7W0_ECTSI) HSP 1 Score: 395 bits (1015), Expect = 2.290e-111 Identity = 458/1494 (30.66%), Postives = 615/1494 (41.16%), Query Frame = 1
Query: 1 VMEVEEIEVDVAPGKEATGARIGL-TKKTLKDTPSSSSTNVRTTLTRFLGPSGPPL-AQWEDINRECPVCHRKGFSSRALVQHVNECLDM-GLSKQDDDEACV--REHAKTGTSNEVSVENAGAK------SKPIDDY--SSYRSGSQKAAKAAKVAKRPSATARRTDREGIESEANATSKSTDA-----TSASLKVCSDDPSMKEKAQIIQKAGHSNTRKAKAKAISNAHAPSPSKPASNPTIVRSRSDRTVASRPRRHKAATGATPMPAAIGE-----KRGEERLRADIALTQLMFVLGEGARCAGINGGCIGTRLFPSPTREDVVVEGDEFAPWESHTGN-TAAIKATTQVKDCPK------RGRNRRVRPRPASWDARPCDEEMGWLGPLPHN--------DCWGDGDGYLTVRPFPASEDFSDSDATIEEEEENQAINGNRGESSDLKDNMINVTPSSRADRFLEVFVCLQPARRSLQLGEALPALSRPVEFSEIPRKCPPPSDADTHERENA---TVDAEIPIPKIEPKXKPNATESMGCKHECIPRHVDAKNTTTPEMERPR----IAVHTQIAKAADHGQKVNXXXXXXXXXXXXXXXXVERLSR-SLENGRLKIRHAFGSPQSGET-----SFK-----KVLVPFPLEISSQLHSPKKTSSEQ-SEQYRVGKRSRTSSQAIDLTSEASPPRM-------LGAGGGGV------PVGRYPRRDDRDSLGADKTWVKRDTLPKRVCVGEESEAEEPGIARFSSP-----------------------------------ARGAINTSVPRHINSVPRYAWTALASDDASPPAAVQLPPPTSGSMQLSPLQKDR--NAAIAREFRSTVYQRSVRARVSPTDVENTSTDSLGREKLDGCTMAQPGVDCEKLVLVPSKANSAIKRSKLPRALTLTSRASSGVVRSAGVAEDPKGSGNLDSRGTPKTASARFTCADSVLDKFSPVDAVTDTAFQAHGGHLADVPQKGSLTVVDPDHGATLRSSWSIDHSERLGKLEFGATLGYDAVWYHPPADEDCVAVLRYHIVPHSVLAPSGGWISERGRFRDDPYIIVKATPASRLSLTAALGRDEG-GRTASSQCPS--DPYRQREDLSLVAPVTLGYRSGEVLVRSSLTLQGNDEQQQAHSRTTEATVLRKPFLSADGNRHLILASTSPGVVAQSRKLDAPSL-------PAERAR--RQQNNPSARPGSETVGGDPS----KSVPATGRFGLTTSPSPKALEANDTGHRVKCPVCNRGMDHWPQAQRNQHAHNCMLKNSSLTKNQNQSPTLATLATTR---IXXXXXXXXDNKQARGAAQEVEPSRSRASKLGRTVERVASRLERGSGSADMEVGPRQRRVSLEGLFSPKPKACDLVRADGDDAGSRAQQGNISRRGPYSTFELDASTSRSATSSTTTTLKQGASGAKRNHASEVRSECPICRLSFAGRQGHWERDAHIQQCLES 4104
+M+ EEI+ + + A + L TKK K S + +TLTRFLGP+GPP + W+D+NR+CPVC + GFSSR+L HVN+CL+ + D E+ R+ A G N A A S + D S R G+ + K + R +++ + +A +K+ T + S + Q K SNTR A + N+ S + P +R R+ +RP+ H+ + A P PAA K + R +IA QL+++ AR GG +GT+LFP+P E + W TG A +++ V +C R NRRVR RPASW ARP DE+ GW G P DCWGDGDGYLT++ FP E +SD E + + + S L + + PSSR DRFL+VF LQPARR+L+L E P P D+ + R NA V P + P K S G + P T P +ER + T A++ + G++V +E +S S N R SP + SFK K+ P + Q P S E+ S ++ R+RTSS+ P + + A GGV P G PR KT K P S+ A N ++ H R A A DA+ Q PPP GS S K A +A++ S+ ++R+VR +S D+ G + + P ++ + S+ N + R L SRASSG++RSA +A + + R + A D V+D + + + G ADV QKGSLTVV +HGATLR SWSID S LG+L FGA L YDAVWY PAD DCV VLRY +VPH LAP+GGWIS GR RDDPYIIVKA A + + A RD G GR S Q DP+ + + + E L +S+ H +ADG A+ S G +SR + PAE + R P+A G T PS K+V A G FGL TSPS KALEAND+G +V CPVCNRGMDHW QR QH H C++K S K + AT + +R I D G + P R R E S R G + GPR RVSL+G+FSPKP R P T + AS T + +ECP+C +SF GRQG WER AH+QQCL+S
Sbjct: 1 MMDAEEIDDNSSQEANLPPATLTLATKKRTKTKKDSPAVAPSSTLTRFLGPAGPPSRSAWDDVNRQCPVCQQTGFSSRSLALHVNDCLERRARADASDSESAAGGRKDAAGGVGNPDGRNTATATTVGNEASSAVTDVTGSGSREGNTRRMSREGTPKSKAVHGRGGEKQVRQDKAAKKTKTLQGERAIDTERAASATSKARVSHTRNQAADKT-KSNTRAALQHRLPNSTQSSSPDGSQQPNPLRRRA--LGLARPKGHQIVSDAMPTPAAASNASRARKGCDSRALDEIAQAQLLYLREASARGPAHGGGWLGTKLFPAPDEEGESADDGSMDCWCVGTGGGEGAYRSSCGVGECGTGRNTRMRKENRRVRGRPASWGARPNDEQWGWFGTWPAGGSVDDGGVDCWGDGDGYLTLKAFPPPETLVESDGEDERDGGGAVMPVDAARSMRLGEEG-SPAPSSRVDRFLQVFSRLQPARRALRLHEP-------------PTPXXXPQDSGDN-RANAKVKNVGTRSPPTAVAPTNKNTVASSSGPQQAERP---GGSPTMRPSVEREPGGAGNSARTGTARSCE-GERVRELTMPPPKRTA-----LETISEVSANNNRRPGATIASSPVQSTSPAIIASFKSVSGHKISRKQPPQEPPQQRKPANRSGEEGSRRHEQEDRNRTSSEGSSRKLSLPAPTVRRTSTFEVQACSGGVENSVSAPKGNSPR--------VVKTPAKIYGPPNESAADAASQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTRRPVAVANENLTIGEHRK---RTAHVDRAPVDATTHGVPQ-PPPRHGSSTGSDEVKRSMPGATVAKKRASSSHERNVRV---------SSMDAGGHRR----SQRDPPPGLQRAIPTSSQWNGSRSRG------ALASRASSGLLRSADLAARSE-----NQRKENENAKVAPAANDGVVD----LAGSNSSQLEECEGRKADVRQKGSLTVVW-EHGATLRDSWSIDSSHELGRLAFGALLDYDAVWYLSPADTDCVGVLRYSVVPHPRLAPTGGWISGSGRLRDDPYIIVKAEAAPSIRPSKAASRDRGDGRGGSGQRQPNLDPHHHQGRVGV-----------EGLTKST------------HG-------------AADGG--YTAAAPSRGHAGRSRGTNXXXXXXAERYEPAEESHSDRVSAGPTAEGGRRTQPQTPSRVLPKAVSAGGSFGLATSPSAKALEANDSGDKVTCPVCNRGMDHWKSGQRQQHVHACLMKQPSSAKKTRLAGD-ATPSASRPSGITHRSSLQFDGSSDPGESTTPRPERRPGV---RRTEGTGSSANRQEGPSGPSEGPRSSRVSLQGVFSPKPA-----------------------RDPDGTNTVSASRG--------TAPXXXXXXXXXXXXXKGLTECPVCGVSFGGRQGQWERQAHVQQCLDS 1353 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2091.6033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig2091.6033.1 >prot_H-elongata_contig2091.6033.1 ID=prot_H-elongata_contig2091.6033.1|Name=mRNA_H-elongata_contig2091.6033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1379bp MEVEEIEVDVAPGKEATGARIGLTKKTLKDTPSSSSTNVRTTLTRFLGPSback to top mRNA from alignment at H-elongata_contig2091:3160..10913- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig2091.6033.1 ID=mRNA_H-elongata_contig2091.6033.1|Name=mRNA_H-elongata_contig2091.6033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7754bp|location=Sequence derived from alignment at H-elongata_contig2091:3160..10913- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig2091:3160..10913- >mRNA_H-elongata_contig2091.6033.1 ID=mRNA_H-elongata_contig2091.6033.1|Name=mRNA_H-elongata_contig2091.6033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=8274bp|location=Sequence derived from alignment at H-elongata_contig2091:3160..10913- (Himanthalia elongata Himel1 dioecious)back to top |