mRNA_H-elongata_contig209056.6032.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209056.6032.1
Unique NamemRNA_H-elongata_contig209056.6032.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209056.6032.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.450e-32
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 IKKKEEVILGDAVLEEGLNDGDLPHLCLDHALLISSGHSVLTPNDLEDVLASVLSSKLRLNKLSVMFNRAKGQGVGHFLSKDTYVREV 264
            IKKK E+I+ D +LEEGLNDGDLPHLCLD  LL+ SGH  L P DLEDVL SV  +K +LNKLSVMFN   GQG+G+F++KDT VREV
Sbjct:   23 IKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREV 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209056.6032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI3.450e-3268.18Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209056contigH-elongata_contig209056:121..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930168.999768-CDS-H-elongata_contig209056:120..2361622930168.999768-CDS-H-elongata_contig209056:120..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209056 121..236 +
1691679306.8755403-CDS-H-elongata_contig209056:120..2361691679306.8755403-CDS-H-elongata_contig209056:120..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209056 121..236 +
1622930169.0189157-CDS-H-elongata_contig209056:487..6351622930169.0189157-CDS-H-elongata_contig209056:487..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209056 488..635 +
1691679306.8869183-CDS-H-elongata_contig209056:487..6351691679306.8869183-CDS-H-elongata_contig209056:487..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209056 488..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209056.6032.1prot_H-elongata_contig209056.6032.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209056 121..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209056.6032.1

>prot_H-elongata_contig209056.6032.1 ID=prot_H-elongata_contig209056.6032.1|Name=mRNA_H-elongata_contig209056.6032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
IKKKEEVILGDAVLEEGLNDGDLPHLCLDHALLISSGHSVLTPNDLEDVL
ASVLSSKLRLNKLSVMFNRAKGQGVGHFLSKDTYVREV
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mRNA from alignment at H-elongata_contig209056:121..635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209056.6032.1 ID=mRNA_H-elongata_contig209056.6032.1|Name=mRNA_H-elongata_contig209056.6032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=515bp|location=Sequence derived from alignment at H-elongata_contig209056:121..635+ (Himanthalia elongata Himel1 dioecious)
ATCAAGAAGAAGGAGGAGGTTATATTGGGGGATGCCGTGTTAGAGGAGGG
ACTCAACGACGGCGATTTACCGCACCTCTGCCTCGACCACGCCTTGCTCA
TAAGCTCTGGGCATTCGTGAGAGTGACAAACGCTTGAATATCTGGAAATC
GTTGAGCCTGAACGTAATATTGCCCTCAGCTTCTTCCTCGTGTATGTATA
TACCCCGTGTGTTAGAAGTTTTGGTTTGGCGCGGTCATCCATCGTTATCA
TCCATCGTTATCATCCATCGTTATTTTCACGAAGGGTTAAATGTAAGGGG
GAGGTTCTTACTAATCTATCGTTTCCTCGTTCGTGTCATCGTTTCTCGCC
GTCGCTCAAACAAAAAGAGTGCTTACACCAAATGATCTCGAAGACGTGTT
GGCAAGCGTTTTGAGCTCGAAGCTCAGGCTGAACAAGCTTTCGGTCATGT
TTAACAGAGCTAAGGGCCAAGGCGTGGGCCACTTCCTGTCCAAGGATACG
TACGTCCGCGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig209056:121..635+

>mRNA_H-elongata_contig209056.6032.1 ID=mRNA_H-elongata_contig209056.6032.1|Name=mRNA_H-elongata_contig209056.6032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig209056:121..635+ (Himanthalia elongata Himel1 dioecious)
ATCAAGAAGAAGGAGGAGGTTATATTGGGGGATGCCGTGTTAGAGGAGGG
ACTCAACGACGGCGATTTACCGCACCTCTGCCTCGACCACGCCTTGCTCA
TAAGCTCTGGGCATTCATCAAGAAGAAGGAGGAGGTTATATTGGGGGATG
CCGTGTTAGAGGAGGGACTCAACGACGGCGATTTACCGCACCTCTGCCTC
GACCACGCCTTGCTCATAAGCTCTGGGCATTCAGTGCTTACACCAAATGA
TCTCGAAGACGTGTTGGCAAGCGTTTTGAGCTCGAAGCTCAGGCTGAACA
AGCTTTCGGTCATGTTTAACAGAGCTAAGGGCCAAGGCGTGGGCCACTTC
CTGTCCAAGGATACGTACGTCCGCGAGGTAAGTGCTTACACCAAATGATC
TCGAAGACGTGTTGGCAAGCGTTTTGAGCTCGAAGCTCAGGCTGAACAAG
CTTTCGGTCATGTTTAACAGAGCTAAGGGCCAAGGCGTGGGCCACTTCCT
GTCCAAGGATACGTACGTCCGCGAGGTA
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