mRNA_H-elongata_contig20896.6030.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: D8LT74_ECTSI (Branched-chain-amino-acid aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT74_ECTSI) HSP 1 Score: 143 bits (360), Expect = 1.580e-37 Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSD----AGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRIS 306
G+TRRSVL+LA+EW + LEVSER L MGE+ +A+ EGRLLEVFGTGTAAVI+PV++IKY +IEV SG IGPL KRFW ++TDIQYGRVEHPWSVRI+
Sbjct: 301 GITRRSVLELAREWRELEGGVPLEVSERPLAMGEVVKASREGRLLEVFGTGTAAVISPVEAIKYRGMEIEVP-SGTSIGPLAKRFWGALTDIQYGRVEHPWSVRIA 405
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: I2CQ49_NANGC (Branched-chain amino acid aminotransferase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ49_NANGC) HSP 1 Score: 123 bits (309), Expect = 7.300e-33 Identity = 54/101 (53.47%), Postives = 78/101 (77.23%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRI 303
GVTRRS+L+LA +W + +V+ER + M E+ +A EGRLLE FG GTA V+ P+++I Y ++D+ V+ G+++GPL KR WD++TDIQYG+V+HPWSV I
Sbjct: 29 GVTRRSILELAGKWRE--FKVTERAVGMKEVVKAKKEGRLLEAFGAGTAVVVCPIRAILYEEEDVVVIKEGDDVGPLTKRMWDALTDIQYGKVDHPWSVLI 127
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A7S0XD88_9STRA (Branched-chain-amino-acid aminotransferase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XD88_9STRA) HSP 1 Score: 128 bits (322), Expect = 2.840e-32 Identity = 59/103 (57.28%), Postives = 82/103 (79.61%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWS-DAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRIS 306
GVTRRS++D+AK WS D ++VSER +TM E+ A +GRLLEVFG GTA VI+PVK+I Y D+DI+V +G+++GP+ + W ++ DIQYG+VEHPWSVR++
Sbjct: 265 GVTRRSIIDIAKSWSGDESIQVSERSITMSEVRSAQLDGRLLEVFGCGTAVVISPVKAIHYNDEDIKVP-TGDDVGPIAYKLWKTLYDIQYGKVEHPWSVRVN 366
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A482UKL1_9ARCH (Branched chain amino acid aminotransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKL1_9ARCH) HSP 1 Score: 123 bits (308), Expect = 3.600e-32 Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEV-VLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRI 303
GVTR+S+LDLA+ W + +VSER+ TMGE+ +A EGRLLE FG GTAAV++P+K I Y D D + V + GPL KR WD+++DIQYG+VEHPWSV I
Sbjct: 72 GVTRQSILDLARSWGE--FKVSERKFTMGEVVKAVKEGRLLEAFGAGTAAVVSPIKLINYKDVDYNIPVDEAKGAGPLTKRVWDTLSDIQYGKVEHPWSVVI 171
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A7S2XXG9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXG9_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.690e-31 Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRI 303
GVTR S L LA+ W + EV+ER +TM EI AA EGRLLE FGTGTAAV+APVK I YM QDI + +GEEIGP+ KR WD IT IQYG+++HPW V I
Sbjct: 220 GVTRNSALALARGWGE--FEVNEREVTMPEIVEAAKEGRLLEAFGTGTAAVVAPVKQIGYMGQDI-FLPTGEEIGPVAKRLWDEITAIQYGKIKHPWGVVI 317
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A4D9D2E3_9STRA (Branched-chain-amino-acid aminotransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E3_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.520e-30 Identity = 54/101 (53.47%), Postives = 78/101 (77.23%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRI 303
GVTRRS+L+LA +W + +V+ER + M E+ +A NEGRLLE FG GTA V+ P+++I Y ++D+ V+ G+++GPL KR WD++TDIQYG+ +HPWSV I
Sbjct: 295 GVTRRSILELAGKWRE--FKVTERAVGMKEVVKAKNEGRLLEAFGAGTAVVVCPIRAILYEEEDVVVIKEGDDVGPLTKRMWDALTDIQYGKFDHPWSVLI 393
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A2D4BR72_PYTIN (Branched-chain-amino-acid aminotransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR72_PYTIN) HSP 1 Score: 123 bits (309), Expect = 3.630e-30 Identity = 56/101 (55.45%), Postives = 80/101 (79.21%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEE--IGPLGKRFWDSITDIQYGRVEHPWSV 297
G+TR S+L LA+EW + +VS+R +TM +I +A +EGR+LEVFG+GTAA+++PV +I YM++D+++ LSG + G L +RFW +TDIQYGRVEHPWSV
Sbjct: 295 GITRDSILTLAREWKE--FKVSDRNVTMKQIQKAVHEGRVLEVFGSGTAAIVSPVSTINYMEEDLKIPLSGTDGKAGKLAERFWKELTDIQYGRVEHPWSV 393
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A6A4V3W6_AMPAM (Branched-chain-amino-acid aminotransferase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4V3W6_AMPAM) HSP 1 Score: 113 bits (282), Expect = 1.750e-28 Identity = 55/101 (54.46%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRI 303
GVTRRS+LDLA++W + VSERRLTMGE RA+ +GR++E+FG GTA V+ PV+ ++YMD+DI V+ + + L R +++DIQYGRVEHPWS I
Sbjct: 55 GVTRRSILDLARQWGE--FTVSERRLTMGEFVRASEQGRVIEMFGAGTACVVCPVERVRYMDRDI-VIPTPDGDASLAHRILSTLSDIQYGRVEHPWSEPI 152
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A7S2CUE9_9STRA (Branched-chain-amino-acid aminotransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUE9_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.530e-28 Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLGKRFWDSITDIQYGRVEHPWSVRIS*RASGFLARN 336
GVTRRS+L+LA+ D +EVSER ++M E+ A +EGRL E FG GTAAVI+PVKSI Y +DI+ +GE+IGPL KR WD + IQYGR+EH WSV + + A N
Sbjct: 277 GVTRRSILELARGMGD--VEVSEREVSMSELLTARDEGRLREAFGAGTAAVISPVKSILYKGEDIDFP-TGEDIGPLAKRMWDQLLGIQYGRIEHEWSVPVEADEAPAAASN 385
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Match: A0A8K1FJB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJB5_PYTOL) HSP 1 Score: 117 bits (294), Expect = 5.300e-28 Identity = 54/101 (53.47%), Postives = 77/101 (76.24%), Query Frame = 1
Query: 1 GVTRRSVLDLAKEWSDAGLEVSERRLTMGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEE--IGPLGKRFWDSITDIQYGRVEHPWSV 297
G+TR S+L L +EW + +VSER L+M +I +A +EG++LEVFG+GTAA+++PV +I YMD+D+ + L+G + G L +R W +TDIQYGRVEHPWSV
Sbjct: 295 GITRDSILALTREWKE--FKVSERDLSMKQIQKAVHEGKVLEVFGSGTAAIVSPVSTISYMDEDLSIPLTGTDGKAGKLAERVWKKLTDIQYGRVEHPWSV 393 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20896.6030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20896.6030.1 >prot_H-elongata_contig20896.6030.1 ID=prot_H-elongata_contig20896.6030.1|Name=mRNA_H-elongata_contig20896.6030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp MGEISRAANEGRLLEVFGTGTAAVIAPVKSIKYMDQDIEVVLSGEEIGPLback to top mRNA from alignment at H-elongata_contig20896:4345..5686- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20896.6030.1 ID=mRNA_H-elongata_contig20896.6030.1|Name=mRNA_H-elongata_contig20896.6030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1342bp|location=Sequence derived from alignment at H-elongata_contig20896:4345..5686- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20896:4345..5686- >mRNA_H-elongata_contig20896.6030.1 ID=mRNA_H-elongata_contig20896.6030.1|Name=mRNA_H-elongata_contig20896.6030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig20896:4345..5686- (Himanthalia elongata Himel1 dioecious)back to top |