mRNA_H-elongata_contig20896.6029.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20896.6029.1
Unique NamemRNA_H-elongata_contig20896.6029.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20896.6029.1 vs. uniprot
Match: A0A6H5KCH7_9PHAE (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH7_9PHAE)

HSP 1 Score: 405 bits (1041), Expect = 6.380e-134
Identity = 205/308 (66.56%), Postives = 242/308 (78.57%), Query Frame = 1 
Query:    1 SNRLLRCLDDSIALSVPPV---SSGTNGKG------DKPLTRGLVLIGGFGDMPVMWKGLSDRASKAGWYTLAPRTPGWGRTDFKEANHVSWRDWVLACRDAVAIVRGLCAEVTVVAHSTGAPVAALVAEMLPVDRLIFTGPNFVSQAGDLWAQKLLLNPIVGPLVTRCLDTVVKKRRRGRPIDNLNEAAYPTAFYLTCYPVRPLRQMWILQNQLSKPWKVSLEVIMLMGESDGSVASLPEQTERVRPFLPAGVPFRACSISDAAHGLPMETEPVVDTLASVVLG-DRAVLDRLITIERSGDGPATSD 894
            S+  LR LD SIALSVPP+   ++ T G         KP  +GLVLIGGFGDMP MW+GL++RASKAGWYTLAPRTPGWGRTDF+EAN V W DWVLACRD +A+ RGLC EVTVVAHSTGAPVAALVAE  P+DRLIFTGPNF+SQAGD WA+KLLL P+VGPLVT+ L  VVKKRR+GRP+D+LN A+Y TA+YLTC PV  LRQMWILQ++LS+PW+VS EV+MLMGESD SVA L EQ + VR ++P  V FRACSI +AAHGLP ETE VVDTLA +V+G D  ++D+L  +  +    A  D
Sbjct:   56 SDPQLRALDKSIALSVPPLPPPTAATPGAARAVLPRKKPFEKGLVLIGGFGDMPCMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRDGLAVARGLCDEVTVVAHSTGAPVAALVAETQPIDRLIFTGPNFLSQAGDRWAKKLLLRPVVGPLVTKYLGAVVKKRRKGRPVDSLNVASYETAYYLTCLPVHTLRQMWILQDKLSRPWRVSGEVLMLMGESDESVAPLLEQADFVRGYVPEDVSFRACSIPNAAHGLPTETEGVVDTLAKIVVGGDEDIIDKLALLAEAKAAVAAGD 363
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BLAST of mRNA_H-elongata_contig20896.6029.1 vs. uniprot
Match: A0A7S2JUH9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.020e-15
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:  481 LDTVVKKR-RRGRPIDNLNEAAYPTAFYLTCYPVRPLRQMWILQNQLSKPWKVSLEVIMLMGESDGSVASLPEQTERVRPFLPAGVPFRACSISDAAHGLPMETEPVVDTLASVV 822
            L  ++KKR R GRP D +N   + T F+L  +P+  +RQMW LQ  LSK W+V  EV+ LMG+ D SV  L EQ E    F+       A  + +AAH L  E +  ++ +A+ +
Sbjct:    3 LKPIIKKRTRNGRPTDTVNVYHHQTGFFLKDFPLNAIRQMWKLQECLSKKWRVE-EVVFLMGDEDLSVGPLMEQVEHTSKFITRETKVHAEVVKNAAHNLCGEGDHALEAIATAI 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20896.6029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCH7_9PHAE6.380e-13466.56AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7S2JUH9_9STRA2.020e-1539.13Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20896contigH-elongata_contig20896:1366..4337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-12_005570.1
Exons5
Model size1807
Cds size783
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930168.2351685-UTR-H-elongata_contig20896:1365..14941622930168.2351685-UTR-H-elongata_contig20896:1365..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20896 1366..1494 +
1691679306.5480673-UTR-H-elongata_contig20896:1365..14941691679306.5480673-UTR-H-elongata_contig20896:1365..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20896 1366..1494 +
1622930168.3256605-UTR-H-elongata_contig20896:3442..43371622930168.3256605-UTR-H-elongata_contig20896:3442..4337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20896 3443..4337 +
1691679306.6038716-UTR-H-elongata_contig20896:3442..43371691679306.6038716-UTR-H-elongata_contig20896:3442..4337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20896 3443..4337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930168.250975-CDS-H-elongata_contig20896:1494..16191622930168.250975-CDS-H-elongata_contig20896:1494..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 1495..1619 +
1691679306.5571964-CDS-H-elongata_contig20896:1494..16191691679306.5571964-CDS-H-elongata_contig20896:1494..1619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 1495..1619 +
1622930168.2660232-CDS-H-elongata_contig20896:1826..20001622930168.2660232-CDS-H-elongata_contig20896:1826..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 1827..2000 +
1691679306.5677834-CDS-H-elongata_contig20896:1826..20001691679306.5677834-CDS-H-elongata_contig20896:1826..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 1827..2000 +
1622930168.282814-CDS-H-elongata_contig20896:2359..25401622930168.282814-CDS-H-elongata_contig20896:2359..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 2360..2540 +
1691679306.5752327-CDS-H-elongata_contig20896:2359..25401691679306.5752327-CDS-H-elongata_contig20896:2359..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 2360..2540 +
1622930168.2951114-CDS-H-elongata_contig20896:2748..28991622930168.2951114-CDS-H-elongata_contig20896:2748..2899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 2749..2899 +
1691679306.5827863-CDS-H-elongata_contig20896:2748..28991691679306.5827863-CDS-H-elongata_contig20896:2748..2899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 2749..2899 +
1622930168.3100302-CDS-H-elongata_contig20896:3290..34421622930168.3100302-CDS-H-elongata_contig20896:3290..3442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 3291..3442 +
1691679306.5906715-CDS-H-elongata_contig20896:3290..34421691679306.5906715-CDS-H-elongata_contig20896:3290..3442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20896 3291..3442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20896.6029.1prot_H-elongata_contig20896.6029.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20896 1495..3442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20896.6029.1

>prot_H-elongata_contig20896.6029.1 ID=prot_H-elongata_contig20896.6029.1|Name=mRNA_H-elongata_contig20896.6029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
MPVMWKGLSDRASKAGWYTLAPRTPGWGRTDFKEANHVSWRDWVLACRDA
VAIVRGLCAEVTVVAHSTGAPVAALVAEMLPVDRLIFTGPNFVSQAGDLW
AQKLLLNPIVGPLVTRCLDTVVKKRRRGRPIDNLNEAAYPTAFYLTCYPV
RPLRQMWILQNQLSKPWKVSLEVIMLMGESDGSVASLPEQTERVRPFLPA
GVPFRACSISDAAHGLPMETEPVVDTLASVVLGDRAVLDRLITIERSGDG
PATSDGPNGS*
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mRNA from alignment at H-elongata_contig20896:1366..4337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20896.6029.1 ID=mRNA_H-elongata_contig20896.6029.1|Name=mRNA_H-elongata_contig20896.6029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2972bp|location=Sequence derived from alignment at H-elongata_contig20896:1366..4337+ (Himanthalia elongata Himel1 dioecious)
AGCAACCGGCTCCTACGCTGCCTGGATGATTCGATCGCCCTTTCCGTGCC
ACCCGTCTCATCCGGAACAAACGGGAAGGGGGATAAACCGCTGACAAGGG
GCCTGGTTTTGATCGGTGGTTTCGGGGACATGCCGGTCATGTGGAAAGGA
TTGTCGGATAGAGCATCCAAGGCCGGCTGGTACACCCTGGCTCCTCGCAC
CCCTGGGTGGGGAAGAACTGATTTCAAGGAGGCTAACCACGTCTCTTGGA
GAGAGTGAGTGGCCCGATAGGATTGAGAGGGGGGAGGAGGTTCCACATGG
GTGGTGCAGAGGTTCATCCGTTGACGTGATTGGCGGGTGATGAGCGACGA
AATAAACGATCATGTTCCTCGCTCACTACATGTTTACCGGTGCGCTCGTG
ACCTTGCCTCCTGTTTCGTCCACTCCGGCCGCCGACGGCGTGGGCGCGCC
ACCTGAATCAGTTGGGTCTTGGCGTGTCGGGATGCCGTGGCCATTGTGCG
CGGACTGTGCGCTGAGGTAACGGTGGTGGCGCACAGCACGGGCGCTCCGG
TGGCAGCATTAGTCGCCGAAATGTTGCCCGTTGACAGGTTGATATTCACA
GGGCCGAACTTCGTCTCCCAGGCCGGCGATCTCTGGTGAGTCTAGCCCTC
GTGGAACAAAGAACGCCTCTTAAATGGCTGCACGTTTCCCTCCTCCAGCC
GATCGCATTCTGGTGCCGAGCGAACAGAAAATGAGAGGCACGACCCAGTC
ACACGCGCATTCCACTCTCAACATCTCGGTGCGGCTTCGTCGAGATGAAG
ATGAACGCGTGAGCTTTAGGATTTTTGTTCGCCGGCTCTCGAATTTCATC
GCATGGTTCGTTGGGTTATTTTTTTAAGTCTGCGGCGGCCACCACCTTGT
CACAGTATTTTGTCCTACCACCTTGTCCCGCGACGGTCTCTCCGTACGAC
GCGACACTACCGCGCACTGACTGACCCTGTCCCGTGTCGAGCAGGGCACA
GAAGCTGCTGCTGAACCCGATCGTGGGCCCGCTGGTGACGCGATGCCTCG
ACACGGTGGTGAAAAAGCGGAGGCGTGGGCGACCGATCGATAACCTCAAC
GAAGCGGCCTACCCGACGGCCTTCTATCTCACATGCTACCCCGTCCGCCC
GCTCCGACAGATGTGGATATTGCAGGTGCTTTCGATACATTTCGTGTCTA
CTATACGACGGTTAATAATAAAAAAATAACATAAAAGGTAGTTACAAGTC
GCTCGTTTGTTATCTGAAACAGAGGCAGGTTGGCGCCTTATTTTTCTGCT
CGCATTCACCCCCTCATCCCACACACCCGACAGCCCAGCGTCGTAAACCT
GTCCTGTGCCGCGCGCGCGTGAGATGCTCGCAGAACCAGCTCTCGAAGCC
GTGGAAAGTTTCCCTCGAGGTGATCATGCTGATGGGGGAATCGGACGGCT
CCGTCGCATCGCTACCGGAGCAAACTGAGAGGGTTCGACCGTTCTTGCCG
GCGGGTGTACCGTTTCGGGCGTGTTCAATTTCAGGTCATATGGTCATACA
CATTGTGCCGTGCCACCTGACAACCCAATATGACATATGACACGACATGG
GCGTCGACCATGCTGATGCTGGCGGTCTACTGACTGTCACACCGACAGTG
TCGTACTTCGTTGTTTCCGTCCATTTTTTTGTCTCGTCACGTTTCTTTTC
AAACTGGGGCCGCCCACGAAGCCGAGCAATATTAAAGCGCTCCGAAGCGT
TCGCAAGACTATGATAACTCCTCAGGATTAATCAAGTGTGTCAAGTTTTT
CTACTCGGCAACGGGGCCAACGAAAGGGAGATTGCTCCGCTTTGTGGCCT
GCTGTAAACCTAACCCCTCCCCCACTTTCCCGTGTCGACCCTCCTCGCCT
CCTTTTCCGGTCGTGACTGTGCAAGATGCGGCGCACGGGCTACCCATGGA
GACCGAACCAGTTGTGGATACCCTCGCGTCTGTCGTGCTCGGGGACAGAG
CGGTGCTCGATAGGCTCATAACCATTGAAAGAAGCGGGGATGGACCCGCT
ACGAGCGACGGCCCGAACGGGTCTTGACGTTCCAGAGTTTCCGTATGGTC
AATATATGGTCACCTCTTATTTTCGCCGCGGCAGAATTTAGGCACGCGTG
TGTTAATATTTGACGAAAGCGCGACTCTTCGCACTGCTTGCGGACGAAAT
ATCACATTTTCCCGTGCAGCGCGGTGCGAGCAGTGGTAGGCTAAGATCCA
CAGCGTAAATGCCGTAGATAAATGTTCGAAAGTAACGGTCATTGCGCTCG
GGTCGACTATCCACGGCGCGTTTGGACATCCTTGCTTGGGGTTGTGATCA
ATCTATTCCCCGCGGCCCGGCCGTTCTGTTATTGTACAGGGATGATATGG
TGCCCTAGGTTGTTTTTTTCAAATCGCGGCGGTTGCTCTACAATCGCCTG
TTATTTTAGTATTATATTACTCTTAAAACCTTTCCGCCTGACTGTACAGG
GCGGAGACGAGTCGTTTATGTCGTTGAAAAACAAGAGCCGTTGTTGTCTC
CATCGATTCTGTTGTACTGTGATTAAAAAGTATGTATCGGAGGTTAACCG
TAGCTGGTAACAGAAGAATATTAAGACTAACATACTACAGTACTCGTAAA
AAGTAGGAACAACAGGCAAACAAACCGCAGGTTTCTATACGGTGGCGGAG
CTGTTTAGGGGTCATACAGAGGGCAACAAACCGAGATAAATGACGCGAGA
GGAGGTCGAAGAAAGAGCCAGTCAAACACCACCCGTGAAGTCACTACTGT
GCGCAGTCTAGTGGTGATGCTGGTAGCTCCCTCGGCCGATATAATATTGC
AGCAACCAAATGACGTAGCGGCGGTAGTAAAATGGCGGCTATCTTCAGTG
TTTCGCACAAGAGCTGAAAAACTCAATTTAAAATATTTTTTGCAGCTTTC
ATCGTCTGCAAGCTTAAATACT
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Coding sequence (CDS) from alignment at H-elongata_contig20896:1366..4337+

>mRNA_H-elongata_contig20896.6029.1 ID=mRNA_H-elongata_contig20896.6029.1|Name=mRNA_H-elongata_contig20896.6029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig20896:1366..4337+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGTCATGTGGAAAGGATTGTCGGATAGAGCATCCAAGGCCGGCTG
GTACACCCTGGCTCCTCGCACCCCTGGGTGGGGAAGAACTGATTTCAAGG
AGGCTAACCACGTCTCTTGGAGAGAATGCCGGTCATGTGGAAAGGATTGT
CGGATAGAGCATCCAAGGCCGGCTGGTACACCCTGGCTCCTCGCACCCCT
GGGTGGGGAAGAACTGATTTCAAGGAGGCTAACCACGTCTCTTGGAGAGA
TTGGGTCTTGGCGTGTCGGGATGCCGTGGCCATTGTGCGCGGACTGTGCG
CTGAGGTAACGGTGGTGGCGCACAGCACGGGCGCTCCGGTGGCAGCATTA
GTCGCCGAAATGTTGCCCGTTGACAGGTTGATATTCACAGGGCCGAACTT
CGTCTCCCAGGCCGGCGATCTCTGTTGGGTCTTGGCGTGTCGGGATGCCG
TGGCCATTGTGCGCGGACTGTGCGCTGAGGTAACGGTGGTGGCGCACAGC
ACGGGCGCTCCGGTGGCAGCATTAGTCGCCGAAATGTTGCCCGTTGACAG
GTTGATATTCACAGGGCCGAACTTCGTCTCCCAGGCCGGCGATCTCTGGG
CACAGAAGCTGCTGCTGAACCCGATCGTGGGCCCGCTGGTGACGCGATGC
CTCGACACGGTGGTGAAAAAGCGGAGGCGTGGGCGACCGATCGATAACCT
CAACGAAGCGGCCTACCCGACGGCCTTCTATCTCACATGCTACCCCGTCC
GCCCGCTCCGACAGATGTGGATATTGCAGGGCACAGAAGCTGCTGCTGAA
CCCGATCGTGGGCCCGCTGGTGACGCGATGCCTCGACACGGTGGTGAAAA
AGCGGAGGCGTGGGCGACCGATCGATAACCTCAACGAAGCGGCCTACCCG
ACGGCCTTCTATCTCACATGCTACCCCGTCCGCCCGCTCCGACAGATGTG
GATATTGCAGAACCAGCTCTCGAAGCCGTGGAAAGTTTCCCTCGAGGTGA
TCATGCTGATGGGGGAATCGGACGGCTCCGTCGCATCGCTACCGGAGCAA
ACTGAGAGGGTTCGACCGTTCTTGCCGGCGGGTGTACCGTTTCGGGCGTG
TTCAATTTCAGAACCAGCTCTCGAAGCCGTGGAAAGTTTCCCTCGAGGTG
ATCATGCTGATGGGGGAATCGGACGGCTCCGTCGCATCGCTACCGGAGCA
AACTGAGAGGGTTCGACCGTTCTTGCCGGCGGGTGTACCGTTTCGGGCGT
GTTCAATTTCAGATGCGGCGCACGGGCTACCCATGGAGACCGAACCAGTT
GTGGATACCCTCGCGTCTGTCGTGCTCGGGGACAGAGCGGTGCTCGATAG
GCTCATAACCATTGAAAGAAGCGGGGATGGACCCGCTACGAGCGACGGCC
CGAACGGGTCTTGAATGCGGCGCACGGGCTACCCATGGAGACCGAACCAG
TTGTGGATACCCTCGCGTCTGTCGTGCTCGGGGACAGAGCGGTGCTCGAT
AGGCTCATAACCATTGAAAGAAGCGGGGATGGACCCGCTACGAGCGACGG
CCCGAACGGGTCTTGA
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