mRNA_H-elongata_contig20892.6026.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: A0A6H5JJG5_9PHAE (DMT protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJG5_9PHAE) HSP 1 Score: 184 bits (466), Expect = 5.550e-53 Identity = 102/158 (64.56%), Postives = 114/158 (72.15%), Query Frame = 1
Query: 1 RSHRSGLMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQ----------SEVKPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGRRKLKTQVSLA 444
RS RSGL++LATVPLVWGTY PSVKYLY+MGES PGL FNF CY+VS A++ N RR A +G+ E + P+ AL NRYAARAG ELG WLFL GT VWGLELTSASRA FLVQLTTVIVP+LEAF+GRRKLK QV LA
Sbjct: 104 RSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVASLNTARRHRTATAGECGRWGKRRGVEEEAELPPKEKALRNRYAARAGAELGLWLFLAGT--VWGLELTSASRAGFLVQLTTVIVPVLEAFVGRRKLKPQVWLA 259
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: A0A835Z2R1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R1_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.380e-27 Identity = 75/172 (43.60%), Postives = 96/172 (55.81%), Query Frame = 1
Query: 4 SHRSGLMLLATVPLVWGTYGPSVKYLYKMGE--STPGLFFNFGCYLVSAAFLTAISWFNDFRRSVE-----ARSGQSEVKPISPQGAALA--------------NRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGRRKLKTQVSLADSTS 456
S + L +LATVP VWGTY PSVK++ +G PGLFFN CYLVS A L RS A + Q+E + Q A L + A+AG ELGGWLF G T Q++GL+ T ASRAAFLVQ TT+IVP++E+ L RR + +V +A T+
Sbjct: 37 SRAAALAVLATVPCVWGTYTPSVKFMESLGPLVQPPGLFFNAACYLVSGAVLATAQLVRSRSRSSNNTSPAASAVQTEALNNAGQIAELTEPDLESDSASTPVRSSVLAQAGAELGGWLFAGSTLQIYGLQYTGASRAAFLVQTTTIIVPLIESLLQRRLVPAKVLVACFTA 208
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: A0A7S2LKU0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LKU0_9STRA) HSP 1 Score: 105 bits (262), Expect = 7.360e-24 Identity = 65/138 (47.10%), Postives = 85/138 (61.59%), Query Frame = 1
Query: 4 SHRS-GLMLLATVPLVWGTYGPSVKYLY-KMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEV--KPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAF 405
S RS G+++L TVPL WGTY P VKY+Y KM S PG F+ G Y+V+A L+ +S ++A++ E+ P Q N+ R G+ELG +LF+G QV GL+ A RAAFLVQLTTVIVP+L AF
Sbjct: 68 SQRSLGILVLLTVPLAWGTYTPVVKYMYEKMDPSMPGFVFSAGYYIVAAVSLSVLS-------QLQAKNDDQEIINTPNDLQIEEENNKITTRGGWELGSYLFIGNGLQVVGLQTVPADRAAFLVQLTTVIVPLLSAF 198
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: A0A7S4GI16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GI16_9EUGL) HSP 1 Score: 99.8 bits (247), Expect = 1.910e-21 Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 19 LMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEVKPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGR 414
L +L +VPLVWGTY P+V+++Y + PG+FF+ YLV+ FL+A++ R G + + A A R G ELGG+LFLG AQV GL+ T++ +AAF+ QLTT+ VP+LEA L R
Sbjct: 377 LAVLFSVPLVWGTYAPAVRFIYTLPVKVPGIFFSSLYYLVATLFLSAVA--------AALRPGPGSAPEDAAERQA-AKRRTLLGGAELGGYLFLGSYAQVLGLQATTSGQAAFITQLTTISVPVLEALLNR 499
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: F0YKC3_AURAN (EamA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKC3_AURAN) HSP 1 Score: 97.1 bits (240), Expect = 4.770e-21 Identity = 61/152 (40.13%), Postives = 85/152 (55.92%), Query Frame = 1
Query: 4 SHRSGLMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEVKPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGRRKLKTQVSLADSTSF 459
S + + +L +VP+VWGTY P+VK +Y + PG F+ Y+V+ L A+ G++ P GAA A+ AARAG ELG +L+ G QV GLE SA AAFLVQLTTV+VP+LE+ R + + LA + +F
Sbjct: 40 SDAARVAVLCSVPVVWGTYAPAVKAVYALPAPPPGAVFSLFYYVVALGCLGAL--------------GRAAAAP----GAAAADEGAARAGLELGAYLYAGNLFQVVGLETVSADAAAFLVQLTTVLVPVLESAATGRAVARETQLACAVAF 173
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: B7FRX7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRX7_PHATC) HSP 1 Score: 95.9 bits (237), Expect = 1.470e-20 Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 1 RSHRSGLMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEVKPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGR 414
R RSGL++L TVP+ WGT+ P+V+YLY + PG F+ YLV+++ L + + ++S G ++ P + + G ELG +LF+G QV GL+ + RAAFL+QLTT+ VP+L+A L R
Sbjct: 7 RERRSGLLVLLTVPVAWGTFEPAVRYLYTIDPPIPGFVFSTCYYLVASSSLYLACFLSQTKKS----DGNKSLEVSQP--------WPIQGGLELGSYLFVGNALQVIGLQTVPSDRAAFLLQLTTIFVPLLDATLAR 132
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: K0RU20_THAOC (EamA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU20_THAOC) HSP 1 Score: 96.3 bits (238), Expect = 2.170e-20 Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 16 GLMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEVKPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEA 402
G+++L TVPL WGTY P+VKY+Y+M + PG F+ G YLV+A L +S S E + ++E S +G + R G+ELG +LF+G QV GL+ A RAAFLVQLTTV+VP++ A
Sbjct: 122 GILVLLTVPLAWGTYTPAVKYMYEMEPAIPGFVFSAGYYLVAAVTLRLLSSLQA-NESNELKVDRAEE---SEEGLDI------RGGWELGSYLFVGNALQVVGLQTVPADRAAFLVQLTTVLVPLVAA 240
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: A0A7S1YBJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YBJ7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.350e-19 Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 1
Query: 16 GLMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEVKPISPQGA---ALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGRRKLKTQV 435
G ++L TVPL WGTY P V+YLY++ PG F+ Y V+A+ L I+W + + + G ++ + A A N++ G ELG +LFLG QV GL+ + RA FLVQLTTV+VP+++ L L V
Sbjct: 27 GFLVLLTVPLAWGTYVPVVRYLYEIKPPVPGFVFSACYYFVAASTLLTITWAQQQQAQAQ-KDGIADPIELDEDVATSPATINQFPLIGGLELGTYLFLGNGLQVLGLKTVPSDRAGFLVQLTTVMVPLVQGALAGNLLSIPV 168
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: A0A7S3P932_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P932_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.250e-19 Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 10 RSGLMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEVKPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGR 414
+SG ++L +VP WGT+ P+V+Y+Y + P L F+ Y V+ L+A+ F + + S E + +E K +S G ELG +LFLG QV+GL ++ RAAFL+QLTT+ VP L+AFL R
Sbjct: 78 QSGFLVLVSVPFAWGTFEPAVRYVYDVAPQIPTLVFSVAYYAVAVMGLSAVLVFENSKNSGELQGFDAE-KSVS-------------GGIELGTYLFLGNAFQVFGLRTVASDRAAFLLQLTTIFVPFLQAFLAR 198
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Match: A0A7S3AAI5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AAI5_9RHOD) HSP 1 Score: 90.9 bits (224), Expect = 8.530e-19 Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 19 LMLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFNDFRRSVEARSGQSEVKPISPQGAALANRYAARAGFELGGWLFLGGTAQVWGLELTSASRAAFLVQLTTVIVPILEAFLGR---RKLKTQVSLAD 447
+ +LA+VP+ W TY +V+ LY + P N G YL S A I+ F S + S Q+ SP+ ++ + Y A GFELG +LFLG T Q+ L+LT+AS+AAF+VQ T+V+VP +EA LGR +K+ V LA
Sbjct: 39 ISILASVPVAWSTYNVAVRLLYSIDHPPPAPLINVGNYLTSLATFQ-IALLVRFALSKFSGSWQASESESSPEYESMISYYYA--GFELGLYLFLGSTIQLEALKLTTASKAAFIVQTTSVLVPTIEAILGRFPFKKILPSVVLAS 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20892.6026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20892.6026.1 >prot_H-elongata_contig20892.6026.1 ID=prot_H-elongata_contig20892.6026.1|Name=mRNA_H-elongata_contig20892.6026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp MLLATVPLVWGTYGPSVKYLYKMGESTPGLFFNFGCYLVSAAFLTAISWFback to top mRNA from alignment at H-elongata_contig20892:287..1801- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20892.6026.1 ID=mRNA_H-elongata_contig20892.6026.1|Name=mRNA_H-elongata_contig20892.6026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1515bp|location=Sequence derived from alignment at H-elongata_contig20892:287..1801- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20892:287..1801- >mRNA_H-elongata_contig20892.6026.1 ID=mRNA_H-elongata_contig20892.6026.1|Name=mRNA_H-elongata_contig20892.6026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig20892:287..1801- (Himanthalia elongata Himel1 dioecious)back to top |