mRNA_H-elongata_contig2089.6025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2089.6025.1
Unique NamemRNA_H-elongata_contig2089.6025.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig2089.6025.1 vs. uniprot
Match: A0A6H5JHG4_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 8.560e-40
Identity = 137/369 (37.13%), Postives = 187/369 (50.68%), Query Frame = 2 
Query:  149 ISCEVFLESGKGYTASVVCLGGRNGNV----RPAGSVSGS--PPTAGFLGFVLTVYSARRVQVVAGEQRPAALGYFPVGPPLHQAVSHLW----LTALDLGDEGSGIAR-LQSFALSKGAALAVVSNE-SVVFFVLVNASSAEIGLRLTLTSLEGATVSAALPMLESDIGSSSSSVSWGPPGSQNMVLVLARKAEYGTFRHAFFYELVKPSPSSSCSSLPRASSLLVEPAVRAVPRPMGPGPGEQSPTRCRGSVIATMIEAPRAGRGRSPPQEDHQAMVVDLSCSPQDKEREGEVVGRGWGGYESKEASSPPPGVFSPWPLLPGARDIVKRAHDALISVTGGCVREGDAVKGMGGGTIGDGGRGLGSAC 1219
            +SCEVFLESGK YTASVVCLGG + +     RP  S + +    + GF GF +TVYSAR +Q+V GEQRPA+ GYF     +HQA+S       L    +G     +   LQSFAL  GAAL+VV  E S +FF+L+N SS+E+ LRLTLTSLEGATVS        D G    S +  P  SQ + LVLAR A++G+F H F+Y +++P+P++  ++    ++   +   +A  +                S IAT                  +A     + +P             +GG           G+FS   LLPGA ++V+RA     S  GG      AV+G GG T+     G+GSA 
Sbjct:  260 LSCEVFLESGKAYTASVVCLGGEDSDKILSGRPKFSAASTLLAESTGFRGFRVTVYSARPLQIVPGEQRPASPGYFRAESSIHQALSRRSSEEILAKGIVGRRAVSVRNPLQSFALGGGAALSVVPMEGSALFFLLINVSSSEVVLRLTLTSLEGATVSTPDSQASPD-GKGMMSSTMCPARSQKIALVLARTADHGSFSHEFYYRVLRPAPTAPATTAAATATRQGDAGAKAASKTF--------------SSIAT------------------RAFAEATAATPF------------FGG-----------GLFSAQALLPGAEELVRRAGGYTFSGEGG------AVEGRGGSTVTGEDGGVGSAA 566
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2089.6025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHG4_9PHAE8.560e-4037.13Calpain catalytic domain-containing protein n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2089contigH-elongata_contig2089:1394..5145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1890
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2089.6025.1prot_H-elongata_contig2089.6025.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2089 1482..4477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.6247928-UTR-H-elongata_contig2089:1393..14811622930167.6247928-UTR-H-elongata_contig2089:1393..1481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2089 1394..1481 +
1691679306.2362924-UTR-H-elongata_contig2089:1393..14811691679306.2362924-UTR-H-elongata_contig2089:1393..1481Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2089 1394..1481 +
1622930167.739307-UTR-H-elongata_contig2089:4477..51451622930167.739307-UTR-H-elongata_contig2089:4477..5145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2089 4478..5145 +
1691679306.2965367-UTR-H-elongata_contig2089:4477..51451691679306.2965367-UTR-H-elongata_contig2089:4477..5145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2089 4478..5145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.6421797-CDS-H-elongata_contig2089:1481..15371622930167.6421797-CDS-H-elongata_contig2089:1481..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 1482..1537 +
1691679306.2444875-CDS-H-elongata_contig2089:1481..15371691679306.2444875-CDS-H-elongata_contig2089:1481..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 1482..1537 +
1622930167.6577587-CDS-H-elongata_contig2089:1770..19421622930167.6577587-CDS-H-elongata_contig2089:1770..1942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 1771..1942 +
1691679306.2519972-CDS-H-elongata_contig2089:1770..19421691679306.2519972-CDS-H-elongata_contig2089:1770..1942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 1771..1942 +
1622930167.6775835-CDS-H-elongata_contig2089:2350..24401622930167.6775835-CDS-H-elongata_contig2089:2350..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 2351..2440 +
1691679306.2665436-CDS-H-elongata_contig2089:2350..24401691679306.2665436-CDS-H-elongata_contig2089:2350..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 2351..2440 +
1622930167.6906853-CDS-H-elongata_contig2089:2754..28791622930167.6906853-CDS-H-elongata_contig2089:2754..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 2755..2879 +
1691679306.2743917-CDS-H-elongata_contig2089:2754..28791691679306.2743917-CDS-H-elongata_contig2089:2754..2879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 2755..2879 +
1622930167.7095273-CDS-H-elongata_contig2089:3234..33951622930167.7095273-CDS-H-elongata_contig2089:3234..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 3235..3395 +
1691679306.2816985-CDS-H-elongata_contig2089:3234..33951691679306.2816985-CDS-H-elongata_contig2089:3234..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 3235..3395 +
1622930167.723955-CDS-H-elongata_contig2089:3947..44771622930167.723955-CDS-H-elongata_contig2089:3947..4477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 3948..4477 +
1691679306.2889507-CDS-H-elongata_contig2089:3947..44771691679306.2889507-CDS-H-elongata_contig2089:3947..4477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2089 3948..4477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2089.6025.1

>prot_H-elongata_contig2089.6025.1 ID=prot_H-elongata_contig2089.6025.1|Name=mRNA_H-elongata_contig2089.6025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
MHKSRSTALIAARLEGAKRRISCEVFLESGKGYTASVVCLGGRNGNVRPA
GSVSGSPPTAGFLGFVLTVYSARRVQVVAGEQRPAALGYFPVGPPLHQAV
SHLWLTALDLGDEGSGIARLQSFALSKGAALAVVSNESVVFFVLVNASSA
EIGLRLTLTSLEGATVSAALPMLESDIGSSSSSVSWGPPGSQNMVLVLAR
KAEYGTFRHAFFYELVKPSPSSSCSSLPRASSLLVEPAVRAVPRPMGPGP
GEQSPTRCRGSVIATMIEAPRAGRGRSPPQEDHQAMVVDLSCSPQDKERE
GEVVGRGWGGYESKEASSPPPGVFSPWPLLPGARDIVKRAHDALISVTGG
CVREGDAVKGMGGGTIGDGGRGLGSAC*
back to top

mRNA from alignment at H-elongata_contig2089:1394..5145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2089.6025.1 ID=mRNA_H-elongata_contig2089.6025.1|Name=mRNA_H-elongata_contig2089.6025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3752bp|location=Sequence derived from alignment at H-elongata_contig2089:1394..5145+ (Himanthalia elongata Himel1 dioecious)
CAGATATTGGTACAGGGCGCTAGGGCTCCTGGTGACAGAGAATGGCAGCA
CCGGACATGCCGAGGGCGGCTGCAACAGCAATGGCAGCATGCACAAGAGT
AGAAGCACGGCACTGATAGCTGCGCGTCTCGAAGGAGCGAAACGGTGCGC
GCGCATGCCAAGCAAGCAACCTCCCCTCCCCACCTCCCCACCCGGGGATC
GCCCTCCAAACTCTAGCCTGCCCGCGCTGCCTCTCTTCTCTCGAATGCTC
ACGTCAGCGGTATCTCTCTCGGCACACAAGACATCGAGTCCTCGCAGCCA
ATGCGTAACGCGCGCACGATAACACGTCTCTTTTTTTCTGACGGAGACGT
GGCATCTTACTCTCCGATAACACACAGGCGTATCTCGTGCGAGGTTTTTC
TGGAGAGCGGGAAGGGGTACACAGCCTCGGTCGTGTGCCTGGGTGGTCGT
AACGGCAACGTTCGGCCTGCGGGGAGCGTGTCTGGTTCCCCTCCCACCGC
CGGGTTCCTCGGGTTCGTCCTGACCGTGTACAGCGCTCGCCGCGTCCAGG
TGCGCCCGGCAGGCAACTGGCACATCGCCGATTATTTTGTGGTGTTCTTT
TCTTCTTCTTTTTTGTTTTGTTTTGTTTCTTCATGTATTATCTTGTTCAG
CGAACCACAAGCGGGGTTGAGAGTAGTCCCAATCGGCATACAGTAATAAT
GTTAGAACATCAACAACAACATTTGTGATCGCGTCTCGTGCGCGCGGGGA
ACAAGCTGTACTTTCATCCCTTCTTTAGTGGCGTAAACGTGATGCCCGTG
TGTGTGTGTGTGTGTTAATGCCTAGAGCGTGGCCCGATCCCATGTATATA
ATAAATAGTATCAATATTCGCGGGGCGCGCGACCCGGGTCTGAGCACGAT
GCCGTTGTTGCGTTCCGATCGGTTCCGCGGGTGGCCAAATAACCACTGAC
CTCGAAGGTGGTTGCCGGCGAACAGCGACCAGCCGCGCTTGGATACTTCC
CGGTCGGTCCTCCCCTCCACCAAGCCGTGTCTCACCTCTGGCTGACGGTA
AGACTGATATAATATCTTCCAATGAAAACTTCGATCGTGATCTCTAACGA
CGTACGCTACCCGTTAACAAAGGCTCCGGCTCTCCCGTGGCGAGGCCATG
AGCGTCGATTTCGAGACCCTCGCCTCGTACAAAAGATAAACTGAATGTCG
TTCGATTTTAGGACTCGCATCCAAGTGTAACCTTCGCCCAGGCCTGGGCC
ATCGCGGAGCCACTAGCGCAATCCGTCCTCTGCGCTCCGCTGCTACTGCG
CGCTTTTTTCTTCTTCGACCCTGATGGCGATTATTCCGCCGTCGTCTGGG
ACGTCTGGCAGGCGCTAGATCTTGGGGATGAGGGAAGCGGCATTGCCCGG
TTGCAATCGTTTGCGCTGTCCAAGGGTGCAGCCCTCGCGGTGGTGTCAAA
CGAAAGTGTGGTCTTCTTTGTCCTCGTAAACGCCAGGTAATCTGCCGGCA
TATATTTCGTTATATTATTTTCGAGCTATTCACAGAGCACGGCGAGAGGA
GGCAATATACGACAGACGGCGAGGTTGCTACAGCTAGGGATGTATACTGT
TTTCGAGTATCTCTACTGAGGAGGATGGGGGGGGGGGGGGGTGGTAAAAA
AAGTCTCATTTCGTCGTTCCTGTGTACCATGATTGAGTTTTCTGCCGTGC
GTATCGCGTGGGACGCAGTCTGGGTGTTTAAGTTTGCTTGTTTTCGTGGC
CATTCGCGCGCACCCCAACTGGTTTAATGGTCTAGTCATATTTTGCCCCA
CGCGACGCTTTTCGCCGCCTCTCGATGGCGCGCTCAAGCAGCTCTGCCGA
AATCGGCCTGCGTCTGACTCTGACGTCATTAGAGGGAGCAACCGTAAGCG
CAGCCTTGCCGATGCTTGAAAGTGACATTGGAAGCAGCAGCAGCAGCGTA
TCGTGGGGCCCGCCGGGGTCACAAAATATGGTGCTGGTGCTCGCACGCAA
AGGTGAGCGTTGTGGAAGTTGTGTAGGTGTTCGGGCCTCTGTTGCTCCTG
GTGCCGCGTTGATTTATCACATATACGCGCATAACCCCCCCCCCCCCATC
AATACTTTAGTCCATCCGTTATATTTTGTCGAGCAGGGTCAGGTTATGTG
CGCGTCCATGCAATGATGGATGGTTGATGGAAAGACGTCGCGAACAAACA
TCCGATCCGATCAAGGTACCATGCCAAATAAATGCGCCCTTGTATGTGTC
ATGTCTGTGTTTATGTGTTTATCTATATATGTGCATGTGTATGTCTTAAA
TTGAATCCTTCTGTTTTAAATGGAGGGTTGGAAGCGCCCGCCTCTTCTAC
TCCTCTTCCTCAAGCAGTGATGCTGTGGAGAGATACCGAGCTGGGGCGAG
GCGAACGTAAGCGACGTTTGTTCCGCCCCATCATGTCCTTTCGCCCAAGG
CGATTGCTCGCTAACCCGAGGCCTTCTGTTGCCACCACCACCGTGTGTGT
TGTGTCTGTGGTGCCACCCGTCATAAAATAAATGACCACGTTTTATTTTT
GCAGCGGAATATGGAACGTTCCGTCACGCGTTCTTTTACGAACTCGTGAA
ACCATCACCATCATCGTCGTGTTCTTCGTTGCCGAGAGCGTCATCGCTAC
TCGTTGAACCAGCAGTGCGTGCGGTCCCAAGGCCCATGGGGCCGGGGCCG
GGCGAGCAATCTCCGACACGCTGCCGCGGATCGGTGATCGCCACGATGAT
TGAGGCTCCAAGAGCCGGACGTGGCCGCAGCCCGCCACAGGAGGATCATC
AAGCGATGGTCGTCGACCTGTCCTGTTCGCCTCAAGACAAGGAGAGAGAA
GGCGAGGTTGTTGGAAGAGGTTGGGGGGGTTACGAATCTAAGGAGGCGTC
GTCACCACCACCGGGCGTGTTTTCGCCGTGGCCTCTGTTGCCGGGGGCTC
GCGATATCGTCAAGCGCGCGCACGACGCGCTCATCTCAGTGACTGGTGGT
TGTGTCAGGGAGGGCGACGCGGTCAAGGGAATGGGCGGCGGAACTATCGG
GGACGGAGGCAGAGGTCTTGGGTCGGCATGTTAGGGTCCCGGTGTCGGGC
TAAACACAAGAAGAAAGGTTTCCGTGGAATTGAGACCTGGGTTGTGGTTT
CTTCATACCTTAGGATTATGGGTAAGGGAAATCCTTGCTTGATTGACATG
CCTTAGAGTGGAGGTCTCCGTCTCCGTCGTTTGGGCTGGGTGCAATCGCA
ACTTGATTCGAGCTGGAGTAAGCGGTCGCGGAAGAGACTCGAGGTTGTTA
GGGCTGGTTGAGACGGGATTTTTTGGGCTCTGCATTCTTCATGAATGTAC
TTATACGAGGTATATAGAGGTTTAGGTAACCGTGATAATCTGTTTCCGCC
GCGTCGCGCGGGGAGATAGATCGCTCGGGTTCGGTCGACAAATATCTACG
GTCAGGCGAGTCGAACTTCTTATTGCTGCTGCAGCGAACGCAATAGCCAC
CTTTTGGGTACCAACCGTGGGATCGCCGTCGCGGAGAAATTTCTAGACAT
CCGTGAGGGCTGCAATCGAATGTACTTCGGAACTAACGCAATGGGGTGTC
TTCTCGATGAAGGGGTATATGGATGATTTGCCGCCGCCGGTGTCTTGCCG
AAGAGCACTCTGGTACTTTCAATACCCAAGTTCGCTATCAATATTTTGTT
GCGCTCGGGTGGTGCCCAATTCGTTTCTCGCTTTGCGTCTGCATGTCCCT
CT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig2089:1394..5145+

>mRNA_H-elongata_contig2089.6025.1 ID=mRNA_H-elongata_contig2089.6025.1|Name=mRNA_H-elongata_contig2089.6025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2268bp|location=Sequence derived from alignment at H-elongata_contig2089:1394..5145+ (Himanthalia elongata Himel1 dioecious)
ATGCACAAGAGTAGAAGCACGGCACTGATAGCTGCGCGTCTCGAAGGAGC
GAAACGATGCACAAGAGTAGAAGCACGGCACTGATAGCTGCGCGTCTCGA
AGGAGCGAAACGGCGTATCTCGTGCGAGGTTTTTCTGGAGAGCGGGAAGG
GGTACACAGCCTCGGTCGTGTGCCTGGGTGGTCGTAACGGCAACGTTCGG
CCTGCGGGGAGCGTGTCTGGTTCCCCTCCCACCGCCGGGTTCCTCGGGTT
CGTCCTGACCGTGTACAGCGCTCGCCGCGTCCAGGCGTATCTCGTGCGAG
GTTTTTCTGGAGAGCGGGAAGGGGTACACAGCCTCGGTCGTGTGCCTGGG
TGGTCGTAACGGCAACGTTCGGCCTGCGGGGAGCGTGTCTGGTTCCCCTC
CCACCGCCGGGTTCCTCGGGTTCGTCCTGACCGTGTACAGCGCTCGCCGC
GTCCAGGTGGTTGCCGGCGAACAGCGACCAGCCGCGCTTGGATACTTCCC
GGTCGGTCCTCCCCTCCACCAAGCCGTGTCTCACCTCTGGCTGACGGTGG
TTGCCGGCGAACAGCGACCAGCCGCGCTTGGATACTTCCCGGTCGGTCCT
CCCCTCCACCAAGCCGTGTCTCACCTCTGGCTGACGGCGCTAGATCTTGG
GGATGAGGGAAGCGGCATTGCCCGGTTGCAATCGTTTGCGCTGTCCAAGG
GTGCAGCCCTCGCGGTGGTGTCAAACGAAAGTGTGGTCTTCTTTGTCCTC
GTAAACGCCAGGCGCTAGATCTTGGGGATGAGGGAAGCGGCATTGCCCGG
TTGCAATCGTTTGCGCTGTCCAAGGGTGCAGCCCTCGCGGTGGTGTCAAA
CGAAAGTGTGGTCTTCTTTGTCCTCGTAAACGCCAGCTCTGCCGAAATCG
GCCTGCGTCTGACTCTGACGTCATTAGAGGGAGCAACCGTAAGCGCAGCC
TTGCCGATGCTTGAAAGTGACATTGGAAGCAGCAGCAGCAGCGTATCGTG
GGGCCCGCCGGGGTCACAAAATATGGTGCTGGTGCTCGCACGCAAAGCTC
TGCCGAAATCGGCCTGCGTCTGACTCTGACGTCATTAGAGGGAGCAACCG
TAAGCGCAGCCTTGCCGATGCTTGAAAGTGACATTGGAAGCAGCAGCAGC
AGCGTATCGTGGGGCCCGCCGGGGTCACAAAATATGGTGCTGGTGCTCGC
ACGCAAAGCGGAATATGGAACGTTCCGTCACGCGTTCTTTTACGAACTCG
TGAAACCATCACCATCATCGTCGTGTTCTTCGTTGCCGAGAGCGTCATCG
CTACTCGTTGAACCAGCAGTGCGTGCGGTCCCAAGGCCCATGGGGCCGGG
GCCGGGCGAGCAATCTCCGACACGCTGCCGCGGATCGGTGATCGCCACGA
TGATTGAGGCTCCAAGAGCCGGACGTGGCCGCAGCCCGCCACAGGAGGAT
CATCAAGCGATGGTCGTCGACCTGTCCTGTTCGCCTCAAGACAAGGAGAG
AGAAGGCGAGGTTGTTGGAAGAGGTTGGGGGGGTTACGAATCTAAGGAGG
CGTCGTCACCACCACCGGGCGTGTTTTCGCCGTGGCCTCTGTTGCCGGGG
GCTCGCGATATCGTCAAGCGCGCGCACGACGCGCTCATCTCAGTGACTGG
TGGTTGTGTCAGGGAGGGCGACGCGGTCAAGGGAATGGGCGGCGGAACTA
TCGGGGACGGAGGCAGAGGTCTTGGGTCGGCATGTTAGCGGAATATGGAA
CGTTCCGTCACGCGTTCTTTTACGAACTCGTGAAACCATCACCATCATCG
TCGTGTTCTTCGTTGCCGAGAGCGTCATCGCTACTCGTTGAACCAGCAGT
GCGTGCGGTCCCAAGGCCCATGGGGCCGGGGCCGGGCGAGCAATCTCCGA
CACGCTGCCGCGGATCGGTGATCGCCACGATGATTGAGGCTCCAAGAGCC
GGACGTGGCCGCAGCCCGCCACAGGAGGATCATCAAGCGATGGTCGTCGA
CCTGTCCTGTTCGCCTCAAGACAAGGAGAGAGAAGGCGAGGTTGTTGGAA
GAGGTTGGGGGGGTTACGAATCTAAGGAGGCGTCGTCACCACCACCGGGC
GTGTTTTCGCCGTGGCCTCTGTTGCCGGGGGCTCGCGATATCGTCAAGCG
CGCGCACGACGCGCTCATCTCAGTGACTGGTGGTTGTGTCAGGGAGGGCG
ACGCGGTCAAGGGAATGGGCGGCGGAACTATCGGGGACGGAGGCAGAGGT
CTTGGGTCGGCATGTTAG
back to top