mRNA_H-elongata_contig20889.6024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20889.6024.1
Unique NamemRNA_H-elongata_contig20889.6024.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20889.6024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20889contigH-elongata_contig20889:2696..2940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size245
Cds size204
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.561649-UTR-H-elongata_contig20889:2695..27361622930167.561649-UTR-H-elongata_contig20889:2695..2736Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20889 2696..2736 +
1691679306.2187192-UTR-H-elongata_contig20889:2695..27361691679306.2187192-UTR-H-elongata_contig20889:2695..2736Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20889 2696..2736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.5727243-CDS-H-elongata_contig20889:2736..29401622930167.5727243-CDS-H-elongata_contig20889:2736..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20889 2737..2940 +
1691679306.227232-CDS-H-elongata_contig20889:2736..29401691679306.227232-CDS-H-elongata_contig20889:2736..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20889 2737..2940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20889.6024.1prot_H-elongata_contig20889.6024.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20889 2737..2940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20889.6024.1

>prot_H-elongata_contig20889.6024.1 ID=prot_H-elongata_contig20889.6024.1|Name=mRNA_H-elongata_contig20889.6024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MAPMSKSTGNAQGSGMSTPPSTEVGTLVEEQQLTIGALYWIEDEIGDDVW
ASAEVLAQCEGHVIVKMV
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mRNA from alignment at H-elongata_contig20889:2696..2940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20889.6024.1 ID=mRNA_H-elongata_contig20889.6024.1|Name=mRNA_H-elongata_contig20889.6024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=245bp|location=Sequence derived from alignment at H-elongata_contig20889:2696..2940+ (Himanthalia elongata Himel1 dioecious)
GTTAGGGAAACGGCCCTGGAGAGCAGCCAGGCAGGCTGACTATGGCGCCT
ATGTCGAAGTCAACGGGCAATGCACAAGGAAGCGGCATGTCGACGCCACC
CTCCACGGAAGTTGGGACGCTGGTCGAGGAACAGCAGCTAACCATTGGAG
CGCTTTATTGGATTGAGGATGAAATAGGTGACGACGTTTGGGCATCCGCC
GAGGTGCTGGCCCAGTGTGAGGGGCATGTGATAGTGAAGATGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig20889:2696..2940+

>mRNA_H-elongata_contig20889.6024.1 ID=mRNA_H-elongata_contig20889.6024.1|Name=mRNA_H-elongata_contig20889.6024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig20889:2696..2940+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCCTATGTCGAAGTCAACGGGCAATGCACAAGGAAGCGGCATGTC
GACGCCACCCTCCACGGAAGTTGGGACGCTGGTCGAGGAACAGCAGCTAA
CCATTGGAGCGCTTTATTGGATTGAGGATGAAATAGGTGACGACGTTTGG
GCATCCGCCGAGGTGCTGGCCCAGTGTGAGGGGCATGTGATAGTGAAGAT
GGTCATGGCGCCTATGTCGAAGTCAACGGGCAATGCACAAGGAAGCGGCA
TGTCGACGCCACCCTCCACGGAAGTTGGGACGCTGGTCGAGGAACAGCAG
CTAACCATTGGAGCGCTTTATTGGATTGAGGATGAAATAGGTGACGACGT
TTGGGCATCCGCCGAGGTGCTGGCCCAGTGTGAGGGGCATGTGATAGTGA
AGATGGTC
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