mRNA_H-elongata_contig20883.6023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20883.6023.1
Unique NamemRNA_H-elongata_contig20883.6023.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20883.6023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20883contigH-elongata_contig20883:4171..4442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.4959464-CDS-H-elongata_contig20883:4170..42731622930167.4959464-CDS-H-elongata_contig20883:4170..4273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20883 4171..4273 +
1691679306.1978366-CDS-H-elongata_contig20883:4170..42731691679306.1978366-CDS-H-elongata_contig20883:4170..4273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20883 4171..4273 +
1622930167.5163832-CDS-H-elongata_contig20883:4297..44401622930167.5163832-CDS-H-elongata_contig20883:4297..4440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20883 4298..4440 +
1691679306.207403-CDS-H-elongata_contig20883:4297..44401691679306.207403-CDS-H-elongata_contig20883:4297..4440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20883 4298..4440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20883.6023.1prot_H-elongata_contig20883.6023.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20883 4171..4440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20883.6023.1

>prot_H-elongata_contig20883.6023.1 ID=prot_H-elongata_contig20883.6023.1|Name=mRNA_H-elongata_contig20883.6023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
RTHGKCTHAASKPSLRRAGFSVDLLLLIGGRKMKEMQNGKTGENSSHKCH
QVNLNRFESFKLYTWQVITLEDFQRVKQPVGL
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mRNA from alignment at H-elongata_contig20883:4171..4442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20883.6023.1 ID=mRNA_H-elongata_contig20883.6023.1|Name=mRNA_H-elongata_contig20883.6023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=272bp|location=Sequence derived from alignment at H-elongata_contig20883:4171..4442+ (Himanthalia elongata Himel1 dioecious)
AGAACGCACGGTAAATGTACTCACGCTGCCTCCAAGCCCTCTCTCCGTCG
TGCGGGATTCTCCGTCGACCTTCTCCTATTAATAGGTGGCAGGAAGATGA
AAGAGAGAGATGAAAGAGCGATGAAATAGATGCAGAATGGAAAGACAGGT
GAGAACAGCTCCCATAAATGCCACCAAGTAAACCTCAATAGATTCGAATC
TTTTAAACTATATACCTGGCAAGTAATAACTCTAGAGGACTTCCAAAGGG
TCAAACAACCAGTCGGTCTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig20883:4171..4442+

>mRNA_H-elongata_contig20883.6023.1 ID=mRNA_H-elongata_contig20883.6023.1|Name=mRNA_H-elongata_contig20883.6023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig20883:4171..4442+ (Himanthalia elongata Himel1 dioecious)
AGAACGCACGGTAAATGTACTCACGCTGCCTCCAAGCCCTCTCTCCGTCG
TGCGGGATTCTCCGTCGACCTTCTCCTATTAATAGGTGGCAGGAAGATGA
AAGAGAACGCACGGTAAATGTACTCACGCTGCCTCCAAGCCCTCTCTCCG
TCGTGCGGGATTCTCCGTCGACCTTCTCCTATTAATAGGTGGCAGGAAGA
TGAAAGAGATGCAGAATGGAAAGACAGGTGAGAACAGCTCCCATAAATGC
CACCAAGTAAACCTCAATAGATTCGAATCTTTTAAACTATATACCTGGCA
AGTAATAACTCTAGAGGACTTCCAAAGGGTCAAACAACCAGTCGGTCTCA
GATGCAGAATGGAAAGACAGGTGAGAACAGCTCCCATAAATGCCACCAAG
TAAACCTCAATAGATTCGAATCTTTTAAACTATATACCTGGCAAGTAATA
ACTCTAGAGGACTTCCAAAGGGTCAAACAACCAGTCGGTCTC
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