mRNA_H-elongata_contig208822.6022.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 183 bits (465), Expect = 2.630e-53 Identity = 95/227 (41.85%), Postives = 144/227 (63.44%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLLN 708
E +P+RE+VG+LMW AT TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRSVS VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++A N ++ ++H+D+ HH +R+ +ER + + V + QHAD LTK+I ++F H F++N
Sbjct: 93 EACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMN 319
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.090e-52 Identity = 94/227 (41.41%), Postives = 144/227 (63.44%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLLN 708
E +P+RE+VG+LMW AT TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRSVS VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++ N ++ ++H+D+ HH +R+ +ER + + +V + QHAD LTK+I ++F H F++N
Sbjct: 148 EASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMN 374
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.280e-51 Identity = 94/227 (41.41%), Postives = 144/227 (63.44%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLLN 708
E +P+RE+VG+LMW AT TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRSVS VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++A N ++ ++H+D+ HH +R+ +ER + + +V + QHAD LTK+I ++ H F++N
Sbjct: 210 EACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMN 436
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.930e-50 Identity = 97/227 (42.73%), Postives = 144/227 (63.44%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLLN 708
E +P+RE+VG+LMW AT TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRSVS VM GG ++WFSR QK ++ESEYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++A N ++ ++H+D+ HH +R+ +ER + + +V S QHAD LTK+I ++F H F++N
Sbjct: 600 EACADVPFRELVGSLMWLATQTRPDIAKAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMN 826
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 178 bits (452), Expect = 2.030e-50 Identity = 94/224 (41.96%), Postives = 140/224 (62.50%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARF 699
E +P+RE+VG+LMW AT TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RSVS VM GG ++WFSR QK +++E+EYVA A+++ E+ FLRQV FM P + I + EDN+GAI++A N ++ ++H+D+ HH +R+ +ER + + +V S QHAD LTK+I ++F H F
Sbjct: 185 EACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 186 bits (472), Expect = 2.450e-50 Identity = 96/227 (42.29%), Postives = 145/227 (63.88%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLLN 708
E +P+RE+VG+LMW AT TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRSVS VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++A N ++ ++H+D+ HH +R+ +ER + + +V S QHAD LTK+I ++F H F++N
Sbjct: 1244 EACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMN 1470
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE) HSP 1 Score: 175 bits (443), Expect = 6.190e-50 Identity = 93/227 (40.97%), Postives = 141/227 (62.11%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLLN 708
E +P+RE+VG+LMW AT TRPDI+ AA +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRSVS VM G ++WFSR QK +++E+EYVA+A+++ E+ FLRQV F+ P + I + EDN+GAI+ A N + +H+D+ HH +R+ +ER + + +V + QHAD LTK+ ++F H F++N
Sbjct: 100 EASADVPFRELVGSLMWLATQTRPDIADAARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGGVTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQVWRFILPDASMPCIPVFEDNQGAIQNAHNPIINSNLKHIDVMHHFIRELVERKDITITHVPTQVQHADFLTKASSKQSFALHRDFMMN 326
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.170e-49 Identity = 92/218 (42.20%), Postives = 138/218 (63.30%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTF 681
E +P+RE+VG++MW AT TRPDI+ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY RRSVS VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM P + I + EDN+GAI++A N ++ ++H+D HH++R +ER + + +V S QHAD LTK+I ++F
Sbjct: 65 EACADVPFRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 170 bits (430), Expect = 4.070e-49 Identity = 96/229 (41.92%), Postives = 134/229 (58.52%), Query Frame = 1
Query: 40 EEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDVA-IKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLLNHS 714
EE +P+RE+VG LMW A TRPDIS A +A+ + P +HW+AAQK L YL T L + + + +V AD+ + RRSVS V +AG + W SR QK A ++SE+EY+A+ + V E F + +F+ P IK+ EDNEGAI +A N SS R +H+D+ HH +R E G + + +V S EQHADILTK++ + FE H F+L S
Sbjct: 4 EEAGDVPFREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLS 232
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.630e-48 Identity = 91/221 (41.18%), Postives = 134/221 (60.63%), Query Frame = 1
Query: 55 IPYREIVGALMWAATMTRPDISFAAHQMAKFNDNPGPTHWRAAQKALQYLWRTRDLGITYGEEPGGGTKLSAWVDADYGTCPDTRRSVS---VMMAGGAISWFSRVQKVSAAASSESEYVALAEMVNELRFLRQVKEFMTPPIDVA-IKIHEDNEGAIKMARNRFSSRRTRHVDINHHMVRDAIERGLVHVEYVRSGEQHADILTKSIDVKTFEKHARFLL 705
+P+RE+VG+LMW A+ TR DIS A +A+ + P +HW+AAQK L YL T L + + + +VDAD+ + RRSVS V +A + W SR QK + ++SE+EY+A+ + V E F+ + +F+ P + I + EDNEGAI +A N SS R++H+D+ HH +R+ E G++ V +V S EQHADILTK++ FE H F L
Sbjct: 34 VPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFAL 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208822.6022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig208822.6022.1 >prot_H-elongata_contig208822.6022.1 ID=prot_H-elongata_contig208822.6022.1|Name=mRNA_H-elongata_contig208822.6022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp LSKSDSPQTGSKVEEMRQIPYREIVGALMWAATMTRPDISFAAHQMAKFNback to top mRNA from alignment at H-elongata_contig208822:326..1039- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig208822.6022.1 ID=mRNA_H-elongata_contig208822.6022.1|Name=mRNA_H-elongata_contig208822.6022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=714bp|location=Sequence derived from alignment at H-elongata_contig208822:326..1039- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig208822:326..1039- >mRNA_H-elongata_contig208822.6022.1 ID=mRNA_H-elongata_contig208822.6022.1|Name=mRNA_H-elongata_contig208822.6022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig208822:326..1039- (Himanthalia elongata Himel1 dioecious)back to top |