mRNA_H-elongata_contig208811.6021.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208811.6021.1
Unique NamemRNA_H-elongata_contig208811.6021.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208811.6021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208811contigH-elongata_contig208811:588..1044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.3075073-UTR-H-elongata_contig208811:587..6031622930167.3075073-UTR-H-elongata_contig208811:587..603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig208811 588..603 +
1691679306.1585538-UTR-H-elongata_contig208811:587..6031691679306.1585538-UTR-H-elongata_contig208811:587..603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig208811 588..603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.3243492-CDS-H-elongata_contig208811:603..10441622930167.3243492-CDS-H-elongata_contig208811:603..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208811 604..1044 +
1691679306.1691113-CDS-H-elongata_contig208811:603..10441691679306.1691113-CDS-H-elongata_contig208811:603..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208811 604..1044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208811.6021.1prot_H-elongata_contig208811.6021.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208811 604..1044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208811.6021.1

>prot_H-elongata_contig208811.6021.1 ID=prot_H-elongata_contig208811.6021.1|Name=mRNA_H-elongata_contig208811.6021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MQMVIDIGYLSEAWRTLGKIAADSEESAYNKVLREYESLKIGTNERVAEY
FVRVNVIRKRLTHHNVTAPPRDVRNRVLSGLIPRFPDEARVFALKGEFEL
SDLEAGITRAESFRLEQERRNATVHALAVAHASGGRTGTGGGPRGQD
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mRNA from alignment at H-elongata_contig208811:588..1044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208811.6021.1 ID=mRNA_H-elongata_contig208811.6021.1|Name=mRNA_H-elongata_contig208811.6021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=457bp|location=Sequence derived from alignment at H-elongata_contig208811:588..1044+ (Himanthalia elongata Himel1 dioecious)
GAGAGAGAGGGATTACATGCAAATGGTAATCGATATAGGTTACCTCTCGG
AAGCATGGCGAACGTTGGGCAAGATCGCAGCTGACTCAGAGGAGTCAGCG
TACAATAAGGTATTACGAGAATACGAATCGCTTAAAATAGGAACCAATGA
ACGTGTTGCCGAATACTTTGTTCGGGTAAATGTGATTCGAAAAAGGCTGA
CCCATCACAACGTGACAGCACCCCCTCGTGATGTAAGGAATAGAGTACTA
AGTGGCCTAATCCCCCGCTTCCCTGATGAAGCACGTGTGTTCGCACTGAA
AGGTGAATTTGAATTGAGCGACCTGGAAGCTGGGATTACCCGGGCGGAGA
GCTTCCGGTTGGAACAAGAGAGGAGGAACGCTACAGTCCACGCGCTAGCC
GTCGCTCATGCGAGCGGCGGCCGAACCGGGACTGGAGGTGGACCCCGTGG
GCAAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig208811:588..1044+

>mRNA_H-elongata_contig208811.6021.1 ID=mRNA_H-elongata_contig208811.6021.1|Name=mRNA_H-elongata_contig208811.6021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig208811:588..1044+ (Himanthalia elongata Himel1 dioecious)
ATGCAAATGGTAATCGATATAGGTTACCTCTCGGAAGCATGGCGAACGTT
GGGCAAGATCGCAGCTGACTCAGAGGAGTCAGCGTACAATAAGGTATTAC
GAGAATACGAATCGCTTAAAATAGGAACCAATGAACGTGTTGCCGAATAC
TTTGTTCGGGTAAATGTGATTCGAAAAAGGCTGACCCATCACAACGTGAC
AGCACCCCCTCGTGATGTAAGGAATAGAGTACTAAGTGGCCTAATCCCCC
GCTTCCCTGATGAAGCACGTGTGTTCGCACTGAAAGGTGAATTTGAATTG
AGCGACCTGGAAGCTGGGATTACCCGGGCGGAGAGCTTCCGGTTGGAACA
AGAGAGGAGGAACGCTACAGTCCACGCGCTAGCCGTCGCTCATGCGAGCG
GCGGCCGAACCGGGACTGGAGGTGGACCCCGTGGGCAAGATATGCAAATG
GTAATCGATATAGGTTACCTCTCGGAAGCATGGCGAACGTTGGGCAAGAT
CGCAGCTGACTCAGAGGAGTCAGCGTACAATAAGGTATTACGAGAATACG
AATCGCTTAAAATAGGAACCAATGAACGTGTTGCCGAATACTTTGTTCGG
GTAAATGTGATTCGAAAAAGGCTGACCCATCACAACGTGACAGCACCCCC
TCGTGATGTAAGGAATAGAGTACTAAGTGGCCTAATCCCCCGCTTCCCTG
ATGAAGCACGTGTGTTCGCACTGAAAGGTGAATTTGAATTGAGCGACCTG
GAAGCTGGGATTACCCGGGCGGAGAGCTTCCGGTTGGAACAAGAGAGGAG
GAACGCTACAGTCCACGCGCTAGCCGTCGCTCATGCGAGCGGCGGCCGAA
CCGGGACTGGAGGTGGACCCCGTGGGCAAGAT
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