mRNA_H-elongata_contig20879.6019.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A6H5K691_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE) HSP 1 Score: 302 bits (773), Expect = 1.950e-94 Identity = 165/239 (69.04%), Postives = 191/239 (79.92%), Query Frame = 1
Query: 1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSA-LAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRA--LGSGVDAACAVEAVSQLREALTERWP 687
V G V+ASILAAD+ADLSGEV RV+ AGADWIH+DVV LTFGPPVVASLRRRHPSVFLDVHLAV++PHEYVD+LKDAG SQVLFHPEA+A + +A LA +I EAGMRAGVALRP+TP S +L LL+P RL+ V+VLAV PGFGGQ FD VL KVEELRS+CPELDIQVDGGVS +TA ACV+AGANVLTSGSFIFG + S V A A ++++LR AL+ +WP
Sbjct: 536 VVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVLTFGPPVVASLRRRHPSVFLDVHLAVENPHEYVDALKDAGTSQVLFHPEAVAEGGDMDAASLAVRISEAGMRAGVALRPETPVSAVLPLLEPRRLVKCVDVLAVQPGFGGQAFDSTVLTKVEELRSICPELDIQVDGGVSATTAQACVAAGANVLTSGSFIFGSNTGSMASSHVSEAAAAVSIAELRGALSAKWP 774
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: D7FTM6_ECTSI (Putative fusion of putative sugar/xylulosekinase and ribulose-phosphate epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM6_ECTSI) HSP 1 Score: 290 bits (742), Expect = 4.040e-93 Identity = 163/248 (65.73%), Postives = 190/248 (76.61%), Query Frame = 1
Query: 1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSA-LAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRALGSGVDAACAVEA----------VSQLREALTERWPL 690
V G V+ASILAAD+ADLSGEV RV+ AGADWIH+DVV LTFGPPVVASLRRRHPSVFLDVHLAV++PHEYVD+LKDAG SQVLFHPEA+ + +A LA +I EAGMRAGVALRP+TP S +L LL+P RL+ V+VLAV PGFGGQ FD VL KVEELRS+CPELDIQVDGGV+ +TA ACV+AGANVLTSGSFIFG + V A+ EA +++LR AL+ +W L
Sbjct: 227 VVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVLTFGPPVVASLRRRHPSVFLDVHLAVENPHEYVDALKDAGTSQVLFHPEAVVEGSDMDAASLAVRISEAGMRAGVALRPETPVSAVLPLLEPRRLVQCVDVLAVQPGFGGQAFDSTVLAKVEELRSICPELDIQVDGGVNAATAQACVAAGANVLTSGSFIFGNNT---GAVAASHVSEAAXXXXXXXXXIAELRGALSAKWRL 471
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A835YTS4_9STRA (Glycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS4_9STRA) HSP 1 Score: 239 bits (609), Expect = 2.060e-70 Identity = 143/249 (57.43%), Postives = 169/249 (67.87%), Query Frame = 1
Query: 1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAM----ACDP------ERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERL-LDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRALGSGVDAACAVEAVSQLREALTERWPLH 693
V+G V ASILAAD AD GE R LEAGA W H+D+V LTFGPPVV SLRRR P +F+DVHLAV++P EY+ L AGASQVLFH EA A P + V+ALA +I+ AGMRAGV L P+TP ++I LL P + LD V+ LAV PGFGGQ FD +VL+KV ELR +CP LDIQVDGGV++ TAAACV AGANVLT+G+ IFG + D A AV A LR+AL RW L
Sbjct: 551 VRGIVDASILAADFADFGGEAERALEAGAQWCHVDIVDGHFAKILTFGPPVVRSLRRRLPQLFIDVHLAVENPGEYIAQLAAAGASQVLFHVEACRSADAGHPSPTYCIDTVAALAREIRAAGMRAGVVLNPETPAAVIAPLLSPGAVQLDCVDCLAVQPGFGGQPFDKSVLQKVAELREMCPTLDIQVDGGVNLKTAAACVQAGANVLTAGTCIFGAE-------DCAAAVGA---LRQALAARWTLQ 789
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A6I9URE9_SESIN (Ribulose-phosphate 3-epimerase n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9URE9_SESIN) HSP 1 Score: 168 bits (426), Expect = 1.200e-48 Identity = 99/233 (42.49%), Postives = 140/233 (60.09%), Query Frame = 1
Query: 1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRALGSGVDAACAVEAVSQLREALTE 678
VK K++ S+L++D A+L+ E R+L GADW+HMD++ LT G PV+ SLR+ H +LD HL V +P +YV+ L AGAS FH EA E L +IK GMR GVAL+P+TP + LL+ + ++ V V+ V PGFGGQ+F P ++ KV LR P LDI+VDGG+ ST SAGAN + +GS +FG A+ + +SQLR+++ +
Sbjct: 2 VKPKIAPSMLSSDFANLAAEADRMLRYGADWLHMDIMDGHFVPNLTIGAPVIESLRK-HTDAYLDCHLMVTNPIDYVEPLGKAGASGFTFHVEAA---KENWQELIHRIKSKGMRPGVALKPETPIEEVYSLLEAKDPVEMVLVMTVQPGFGGQKFMPEMMDKVRSLRKKYPSLDIEVDGGLGPSTVDLASSAGANCIVAGSSVFG----------ASYPAQVISQLRKSVQD 220
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A7S4LMD7_9EUGL (Ribulose-phosphate 3-epimerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LMD7_9EUGL) HSP 1 Score: 168 bits (425), Expect = 2.410e-48 Identity = 92/205 (44.88%), Postives = 133/205 (64.88%), Query Frame = 1
Query: 10 KVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID 603
K+ S+LA D+A+++ E RVL+AGAD++H+DV+ +++GPPV+ SLR+ F D HL V P ++VD++KDAG Q +FHPEA +PE+ L QI+ AGM+ G AL+P TP + HL+ +D V ++ V PGFGGQ F +L KV+ELR+ P+LDI+VDGG+ T A AGAN++ +GS +F D
Sbjct: 16 KIGPSLLACDLANMASESQRVLDAGADYLHLDVMDGHFVPNISWGPPVIKSLRKHIKEAFFDCHLMVSKPEQWVDAIKDAGGDQFIFHPEATE-EPEK---LIQQIRAAGMKVGFALKPRTPVADWAHLVGQ---VDVVLIMTVEPGFGGQSFMEDMLPKVQELRAAYPQLDIEVDGGLGPKTIDAAAKAGANMIVAGSSVFNGD 213
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A8B8QC05_9MYRT (Ribulose-phosphate 3-epimerase n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8QC05_9MYRT) HSP 1 Score: 166 bits (421), Expect = 6.590e-48 Identity = 93/206 (45.15%), Postives = 128/206 (62.14%), Query Frame = 1
Query: 1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFG 597
V K++ S+L++D A+L+ E R+L+ GADW+HMD++ LT G PV+ SLR+ H +LD HL V +P +YV+ L DAGAS FH E E L ++K GMR GVALRP TP + L++ E ++ V V+ V PGFGGQ+F P ++ KV LR+ P LDI+VDGG+ ST SAGAN + +GS +FG
Sbjct: 3 VTAKIAPSMLSSDFANLASEAQRMLDCGADWLHMDIMDGHFVPNLTLGAPVIKSLRK-HTKAYLDCHLMVTNPLDYVEPLGDAGASGFTFHVEV---SKENWQELVKKVKSKGMRPGVALRPGTPIEEVYPLVEGENPVEMVLVMTVEPGFGGQKFMPEMMEKVCVLRAKYPSLDIEVDGGLGPSTIDMAASAGANCIVAGSSVFG 204
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A4P9Z384_9FUNG (Ribulose-phosphate 3-epimerase n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z384_9FUNG) HSP 1 Score: 166 bits (420), Expect = 8.280e-48 Identity = 97/207 (46.86%), Postives = 126/207 (60.87%), Query Frame = 1
Query: 4 KGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID 603
+ K++ S+L+ D A+L+ E R+LE GAD++HMDV+ LT GPP+V SLR+ H FLD HL V P ++V+ AGAS FH EA E AL +IK+ GMRAG+A++P TP + LD V V+ V PGFGGQRF P + KVE LR+ P LDIQVDGG+ + T AGANV+ +GS IFG D
Sbjct: 3 QAKIAPSLLSGDFANLAAECKRMLELGADYLHMDVMDGHFVPNLTLGPPIVKSLRK-HTDAFLDCHLMVSEPEKWVNDFARAGASMYTFHIEAA----EDAGALIRRIKDLGMRAGIAVKPATPIEAVYPFAAQ---LDQVLVMTVEPGFGGQRFMPHCMPKVEALRARYPSLDIQVDGGLDLETIEQAARAGANVIVAGSSIFGAD 201
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A7C9CKG4_OPUST (Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CKG4_OPUST) HSP 1 Score: 166 bits (419), Expect = 9.810e-48 Identity = 91/206 (44.17%), Postives = 126/206 (61.17%), Query Frame = 1
Query: 1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFG 597
VK K++ S+L++D A+L+ E R+L+ GADW+HMD++ LT GPPV+ SLR+ H +LD HL V P YV+ L AGAS FH E + L ++K GMR GV+L+P TP + L++ E ++ V V+ V PGFGGQ+F P ++ KV LR P LDI+VDGG+ ST A AGAN + +GS +FG
Sbjct: 3 VKAKIAPSMLSSDFANLASEAQRMLDCGADWLHMDIMDGHFVPNLTIGPPVIESLRK-HTKAYLDCHLMVTDPFAYVEPLGKAGASGFTFHVEVC---KDNWQELVEKVKSKGMRPGVSLKPGTPIEEVYPLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRALRKKYPTLDIEVDGGLGPSTIDAAAEAGANCIVAGSSVFG 204
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: C1E4B2_MICCC (Ribulose-phosphate 3-epimerase n=2 Tax=Micromonas TaxID=38832 RepID=C1E4B2_MICCC) HSP 1 Score: 166 bits (419), Expect = 1.170e-47 Identity = 92/204 (45.10%), Postives = 128/204 (62.75%), Query Frame = 1
Query: 13 VSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID 603
VS S+LA+D A ++ E +V++ GADW+H+D++ LTFG PVV L + H FLD HL V +P +YV+ LKDAGA FH E E + L + + AGM+AGVAL+P TP + H + +D V V+ V PGFGGQ+F P ++ KV+ LR P++DIQVDGG+ +T A +AGANV+ +GS +FG D
Sbjct: 7 VSPSLLASDFARMADEAKKVIDGGADWLHLDIMDGHFVPNLTFGAPVVKCLAK-HTDAFLDCHLMVTNPGDYVEPLKDAGAHMFTFHIEV----DEDAAVLCDRARAAGMKAGVALKPGTPAEAV-HAICDAGKVDMVLVMTVEPGFGGQKFQPEMMPKVKALRERYPQIDIQVDGGLGPATIEAAATAGANVIVAGSSVFGSD 204
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: C1MUG1_MICPC (Ribulose-phosphate 3-epimerase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUG1_MICPC) HSP 1 Score: 167 bits (423), Expect = 1.230e-47 Identity = 101/236 (42.80%), Postives = 139/236 (58.90%), Query Frame = 1
Query: 10 KVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID------RALGSGVDAACAVEAVSQLREALTE 678
K+S S+LA D A++ E RVL+AGADW+H+DV+ L+FG PV+ L ++ P FLDVHL V +P +YV +KDAGA+ FH EA V+A A + AGM+ G+AL+P TP + + L + +D + V+ V PGFGGQ+F PA++ K LR+ ELDIQVDGG+ T AGANV+ +GS ++G L + V+ A A EA S R A E
Sbjct: 7 KISPSLLACDFANIETEAKRVLDAGADWLHLDVMDGHFVPNLSFGAPVIKCLHKKLPDAFLDVHLMVTNPKDYVAPMKDAGATMFTFHVEATTDGGADVAAAA---RGAGMKVGIALKPQTPPEAV-YALCDKGGVDMILVMTVEPGFGGQKFQPAMMAKARTLRNKYAELDIQVDGGLDGVTVREAAVAGANVIVAGSSVYGAKDIPDAIATLRAAVEKARAAEAESNARVAAQE 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20879.6019.1 >prot_H-elongata_contig20879.6019.1 ID=prot_H-elongata_contig20879.6019.1|Name=mRNA_H-elongata_contig20879.6019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVVLTFGPPVVASLRRback to top mRNA from alignment at H-elongata_contig20879:454..2703+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20879.6019.1 ID=mRNA_H-elongata_contig20879.6019.1|Name=mRNA_H-elongata_contig20879.6019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2250bp|location=Sequence derived from alignment at H-elongata_contig20879:454..2703+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20879:454..2703+ >mRNA_H-elongata_contig20879.6019.1 ID=mRNA_H-elongata_contig20879.6019.1|Name=mRNA_H-elongata_contig20879.6019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig20879:454..2703+ (Himanthalia elongata Himel1 dioecious)back to top |