mRNA_H-elongata_contig20879.6019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20879.6019.1
Unique NamemRNA_H-elongata_contig20879.6019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A6H5K691_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 1.950e-94
Identity = 165/239 (69.04%), Postives = 191/239 (79.92%), Query Frame = 1
Query:    1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSA-LAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRA--LGSGVDAACAVEAVSQLREALTERWP 687
            V G V+ASILAAD+ADLSGEV RV+ AGADWIH+DVV       LTFGPPVVASLRRRHPSVFLDVHLAV++PHEYVD+LKDAG SQVLFHPEA+A   +  +A LA +I EAGMRAGVALRP+TP S +L LL+P RL+  V+VLAV PGFGGQ FD  VL KVEELRS+CPELDIQVDGGVS +TA ACV+AGANVLTSGSFIFG +      S V  A A  ++++LR AL+ +WP
Sbjct:  536 VVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVLTFGPPVVASLRRRHPSVFLDVHLAVENPHEYVDALKDAGTSQVLFHPEAVAEGGDMDAASLAVRISEAGMRAGVALRPETPVSAVLPLLEPRRLVKCVDVLAVQPGFGGQAFDSTVLTKVEELRSICPELDIQVDGGVSATTAQACVAAGANVLTSGSFIFGSNTGSMASSHVSEAAAAVSIAELRGALSAKWP 774          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: D7FTM6_ECTSI (Putative fusion of putative sugar/xylulosekinase and ribulose-phosphate epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM6_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 4.040e-93
Identity = 163/248 (65.73%), Postives = 190/248 (76.61%), Query Frame = 1
Query:    1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSA-LAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRALGSGVDAACAVEA----------VSQLREALTERWPL 690
            V G V+ASILAAD+ADLSGEV RV+ AGADWIH+DVV       LTFGPPVVASLRRRHPSVFLDVHLAV++PHEYVD+LKDAG SQVLFHPEA+    +  +A LA +I EAGMRAGVALRP+TP S +L LL+P RL+  V+VLAV PGFGGQ FD  VL KVEELRS+CPELDIQVDGGV+ +TA ACV+AGANVLTSGSFIFG +      V A+   EA          +++LR AL+ +W L
Sbjct:  227 VVGLVNASILAADMADLSGEVERVMAAGADWIHVDVVDNVFAKVLTFGPPVVASLRRRHPSVFLDVHLAVENPHEYVDALKDAGTSQVLFHPEAVVEGSDMDAASLAVRISEAGMRAGVALRPETPVSAVLPLLEPRRLVQCVDVLAVQPGFGGQAFDSTVLAKVEELRSICPELDIQVDGGVNAATAQACVAAGANVLTSGSFIFGNNT---GAVAASHVSEAAXXXXXXXXXIAELRGALSAKWRL 471          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A835YTS4_9STRA (Glycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS4_9STRA)

HSP 1 Score: 239 bits (609), Expect = 2.060e-70
Identity = 143/249 (57.43%), Postives = 169/249 (67.87%), Query Frame = 1
Query:    1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAM----ACDP------ERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERL-LDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRALGSGVDAACAVEAVSQLREALTERWPLH 693
            V+G V ASILAAD AD  GE  R LEAGA W H+D+V       LTFGPPVV SLRRR P +F+DVHLAV++P EY+  L  AGASQVLFH EA     A  P      + V+ALA +I+ AGMRAGV L P+TP ++I  LL P  + LD V+ LAV PGFGGQ FD +VL+KV ELR +CP LDIQVDGGV++ TAAACV AGANVLT+G+ IFG +       D A AV A   LR+AL  RW L 
Sbjct:  551 VRGIVDASILAADFADFGGEAERALEAGAQWCHVDIVDGHFAKILTFGPPVVRSLRRRLPQLFIDVHLAVENPGEYIAQLAAAGASQVLFHVEACRSADAGHPSPTYCIDTVAALAREIRAAGMRAGVVLNPETPAAVIAPLLSPGAVQLDCVDCLAVQPGFGGQPFDKSVLQKVAELREMCPTLDIQVDGGVNLKTAAACVQAGANVLTAGTCIFGAE-------DCAAAVGA---LRQALAARWTLQ 789          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A6I9URE9_SESIN (Ribulose-phosphate 3-epimerase n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9URE9_SESIN)

HSP 1 Score: 168 bits (426), Expect = 1.200e-48
Identity = 99/233 (42.49%), Postives = 140/233 (60.09%), Query Frame = 1
Query:    1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGIDRALGSGVDAACAVEAVSQLREALTE 678
            VK K++ S+L++D A+L+ E  R+L  GADW+HMD++       LT G PV+ SLR+ H   +LD HL V +P +YV+ L  AGAS   FH EA     E    L  +IK  GMR GVAL+P+TP   +  LL+ +  ++ V V+ V PGFGGQ+F P ++ KV  LR   P LDI+VDGG+  ST     SAGAN + +GS +FG          A+   + +SQLR+++ +
Sbjct:    2 VKPKIAPSMLSSDFANLAAEADRMLRYGADWLHMDIMDGHFVPNLTIGAPVIESLRK-HTDAYLDCHLMVTNPIDYVEPLGKAGASGFTFHVEAA---KENWQELIHRIKSKGMRPGVALKPETPIEEVYSLLEAKDPVEMVLVMTVQPGFGGQKFMPEMMDKVRSLRKKYPSLDIEVDGGLGPSTVDLASSAGANCIVAGSSVFG----------ASYPAQVISQLRKSVQD 220          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A7S4LMD7_9EUGL (Ribulose-phosphate 3-epimerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LMD7_9EUGL)

HSP 1 Score: 168 bits (425), Expect = 2.410e-48
Identity = 92/205 (44.88%), Postives = 133/205 (64.88%), Query Frame = 1
Query:   10 KVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID 603
            K+  S+LA D+A+++ E  RVL+AGAD++H+DV+       +++GPPV+ SLR+     F D HL V  P ++VD++KDAG  Q +FHPEA   +PE+   L  QI+ AGM+ G AL+P TP +   HL+     +D V ++ V PGFGGQ F   +L KV+ELR+  P+LDI+VDGG+   T  A   AGAN++ +GS +F  D
Sbjct:   16 KIGPSLLACDLANMASESQRVLDAGADYLHLDVMDGHFVPNISWGPPVIKSLRKHIKEAFFDCHLMVSKPEQWVDAIKDAGGDQFIFHPEATE-EPEK---LIQQIRAAGMKVGFALKPRTPVADWAHLVGQ---VDVVLIMTVEPGFGGQSFMEDMLPKVQELRAAYPQLDIEVDGGLGPKTIDAAAKAGANMIVAGSSVFNGD 213          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A8B8QC05_9MYRT (Ribulose-phosphate 3-epimerase n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8QC05_9MYRT)

HSP 1 Score: 166 bits (421), Expect = 6.590e-48
Identity = 93/206 (45.15%), Postives = 128/206 (62.14%), Query Frame = 1
Query:    1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFG 597
            V  K++ S+L++D A+L+ E  R+L+ GADW+HMD++       LT G PV+ SLR+ H   +LD HL V +P +YV+ L DAGAS   FH E      E    L  ++K  GMR GVALRP TP   +  L++ E  ++ V V+ V PGFGGQ+F P ++ KV  LR+  P LDI+VDGG+  ST     SAGAN + +GS +FG
Sbjct:    3 VTAKIAPSMLSSDFANLASEAQRMLDCGADWLHMDIMDGHFVPNLTLGAPVIKSLRK-HTKAYLDCHLMVTNPLDYVEPLGDAGASGFTFHVEV---SKENWQELVKKVKSKGMRPGVALRPGTPIEEVYPLVEGENPVEMVLVMTVEPGFGGQKFMPEMMEKVCVLRAKYPSLDIEVDGGLGPSTIDMAASAGANCIVAGSSVFG 204          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A4P9Z384_9FUNG (Ribulose-phosphate 3-epimerase n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z384_9FUNG)

HSP 1 Score: 166 bits (420), Expect = 8.280e-48
Identity = 97/207 (46.86%), Postives = 126/207 (60.87%), Query Frame = 1
Query:    4 KGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID 603
            + K++ S+L+ D A+L+ E  R+LE GAD++HMDV+       LT GPP+V SLR+ H   FLD HL V  P ++V+    AGAS   FH EA     E   AL  +IK+ GMRAG+A++P TP   +         LD V V+ V PGFGGQRF P  + KVE LR+  P LDIQVDGG+ + T      AGANV+ +GS IFG D
Sbjct:    3 QAKIAPSLLSGDFANLAAECKRMLELGADYLHMDVMDGHFVPNLTLGPPIVKSLRK-HTDAFLDCHLMVSEPEKWVNDFARAGASMYTFHIEAA----EDAGALIRRIKDLGMRAGIAVKPATPIEAVYPFAAQ---LDQVLVMTVEPGFGGQRFMPHCMPKVEALRARYPSLDIQVDGGLDLETIEQAARAGANVIVAGSSIFGAD 201          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: A0A7C9CKG4_OPUST (Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CKG4_OPUST)

HSP 1 Score: 166 bits (419), Expect = 9.810e-48
Identity = 91/206 (44.17%), Postives = 126/206 (61.17%), Query Frame = 1
Query:    1 VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFG 597
            VK K++ S+L++D A+L+ E  R+L+ GADW+HMD++       LT GPPV+ SLR+ H   +LD HL V  P  YV+ L  AGAS   FH E      +    L  ++K  GMR GV+L+P TP   +  L++ E  ++ V V+ V PGFGGQ+F P ++ KV  LR   P LDI+VDGG+  ST  A   AGAN + +GS +FG
Sbjct:    3 VKAKIAPSMLSSDFANLASEAQRMLDCGADWLHMDIMDGHFVPNLTIGPPVIESLRK-HTKAYLDCHLMVTDPFAYVEPLGKAGASGFTFHVEVC---KDNWQELVEKVKSKGMRPGVSLKPGTPIEEVYPLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRALRKKYPTLDIEVDGGLGPSTIDAAAEAGANCIVAGSSVFG 204          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: C1E4B2_MICCC (Ribulose-phosphate 3-epimerase n=2 Tax=Micromonas TaxID=38832 RepID=C1E4B2_MICCC)

HSP 1 Score: 166 bits (419), Expect = 1.170e-47
Identity = 92/204 (45.10%), Postives = 128/204 (62.75%), Query Frame = 1
Query:   13 VSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID 603
            VS S+LA+D A ++ E  +V++ GADW+H+D++       LTFG PVV  L + H   FLD HL V +P +YV+ LKDAGA    FH E      E  + L  + + AGM+AGVAL+P TP   + H +     +D V V+ V PGFGGQ+F P ++ KV+ LR   P++DIQVDGG+  +T  A  +AGANV+ +GS +FG D
Sbjct:    7 VSPSLLASDFARMADEAKKVIDGGADWLHLDIMDGHFVPNLTFGAPVVKCLAK-HTDAFLDCHLMVTNPGDYVEPLKDAGAHMFTFHIEV----DEDAAVLCDRARAAGMKAGVALKPGTPAEAV-HAICDAGKVDMVLVMTVEPGFGGQKFQPEMMPKVKALRERYPQIDIQVDGGLGPATIEAAATAGANVIVAGSSVFGSD 204          
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Match: C1MUG1_MICPC (Ribulose-phosphate 3-epimerase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUG1_MICPC)

HSP 1 Score: 167 bits (423), Expect = 1.230e-47
Identity = 101/236 (42.80%), Postives = 139/236 (58.90%), Query Frame = 1
Query:   10 KVSASILAADVADLSGEVSRVLEAGADWIHMDVV-------LTFGPPVVASLRRRHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAFQIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFDPAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGID------RALGSGVDAACAVEAVSQLREALTE 678
            K+S S+LA D A++  E  RVL+AGADW+H+DV+       L+FG PV+  L ++ P  FLDVHL V +P +YV  +KDAGA+   FH EA       V+A A   + AGM+ G+AL+P TP   + + L  +  +D + V+ V PGFGGQ+F PA++ K   LR+   ELDIQVDGG+   T      AGANV+ +GS ++G          L + V+ A A EA S  R A  E
Sbjct:    7 KISPSLLACDFANIETEAKRVLDAGADWLHLDVMDGHFVPNLSFGAPVIKCLHKKLPDAFLDVHLMVTNPKDYVAPMKDAGATMFTFHVEATTDGGADVAAAA---RGAGMKVGIALKPQTPPEAV-YALCDKGGVDMILVMTVEPGFGGQKFQPAMMAKARTLRNKYAELDIQVDGGLDGVTVREAAVAGANVIVAGSSVYGAKDIPDAIATLRAAVEKARAAEAESNARVAAQE 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20879.6019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K691_9PHAE1.950e-9469.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTM6_ECTSI4.040e-9365.73Putative fusion of putative sugar/xylulosekinase a... [more]
A0A835YTS4_9STRA2.060e-7057.43Glycerol kinase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A6I9URE9_SESIN1.200e-4842.49Ribulose-phosphate 3-epimerase n=2 Tax=Sesamum ind... [more]
A0A7S4LMD7_9EUGL2.410e-4844.88Ribulose-phosphate 3-epimerase n=1 Tax=Eutreptiell... [more]
A0A8B8QC05_9MYRT6.590e-4845.15Ribulose-phosphate 3-epimerase n=5 Tax=Myrtoideae ... [more]
A0A4P9Z384_9FUNG8.280e-4846.86Ribulose-phosphate 3-epimerase n=1 Tax=Syncephalis... [more]
A0A7C9CKG4_OPUST9.810e-4844.17Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=... [more]
C1E4B2_MICCC1.170e-4745.10Ribulose-phosphate 3-epimerase n=2 Tax=Micromonas ... [more]
C1MUG1_MICPC1.230e-4742.80Ribulose-phosphate 3-epimerase n=1 Tax=Micromonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20879contigH-elongata_contig20879:454..2703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue6.7e-77
Seed eggNOG ortholog2880.D7FTM6
Preferred nameXK-RPE
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
EggNOG free text desc.ribulose-phosphate 3-epimerase activity
EggNOG OGsCOG0036@1,COG0554@1,KOG2517@2759,KOG3111@2759
EC5.1.3.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size705
Cds size705
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20879.6019.1prot_H-elongata_contig20879.6019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20879 454..2703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.0907087-CDS-H-elongata_contig20879:453..5611622930167.0907087-CDS-H-elongata_contig20879:453..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 454..561 +
1691679306.0631223-CDS-H-elongata_contig20879:453..5611691679306.0631223-CDS-H-elongata_contig20879:453..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 454..561 +
1622930167.1068468-CDS-H-elongata_contig20879:811..9971622930167.1068468-CDS-H-elongata_contig20879:811..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 812..997 +
1691679306.0757046-CDS-H-elongata_contig20879:811..9971691679306.0757046-CDS-H-elongata_contig20879:811..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 812..997 +
1622930167.1207078-CDS-H-elongata_contig20879:1295..15111622930167.1207078-CDS-H-elongata_contig20879:1295..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 1296..1511 +
1691679306.0857594-CDS-H-elongata_contig20879:1295..15111691679306.0857594-CDS-H-elongata_contig20879:1295..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 1296..1511 +
1622930167.1425169-CDS-H-elongata_contig20879:2508..27031622930167.1425169-CDS-H-elongata_contig20879:2508..2703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 2509..2703 +
1691679306.0954633-CDS-H-elongata_contig20879:2508..27031691679306.0954633-CDS-H-elongata_contig20879:2508..2703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20879 2509..2703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20879.6019.1

>prot_H-elongata_contig20879.6019.1 ID=prot_H-elongata_contig20879.6019.1|Name=mRNA_H-elongata_contig20879.6019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
VKGKVSASILAADVADLSGEVSRVLEAGADWIHMDVVLTFGPPVVASLRR
RHPSVFLDVHLAVDSPHEYVDSLKDAGASQVLFHPEAMACDPERVSALAF
QIKEAGMRAGVALRPDTPTSLILHLLQPERLLDSVNVLAVSPGFGGQRFD
PAVLRKVEELRSVCPELDIQVDGGVSVSTAAACVSAGANVLTSGSFIFGI
DRALGSGVDAACAVEAVSQLREALTERWPLHGAI*
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mRNA from alignment at H-elongata_contig20879:454..2703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20879.6019.1 ID=mRNA_H-elongata_contig20879.6019.1|Name=mRNA_H-elongata_contig20879.6019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2250bp|location=Sequence derived from alignment at H-elongata_contig20879:454..2703+ (Himanthalia elongata Himel1 dioecious)
GTTAAGGGGAAAGTTAGCGCCTCGATTCTTGCCGCCGACGTGGCCGATCT GTCGGGGGAGGTGTCGAGGGTCCTGGAGGCCGGCGCGGACTGGATTCACA TGGACGTCGTGGACAATCACTTCGCGAAGGCGAGACCTTTATGCTGCATG CTGTATGCTGAAACCTGCTGACGGAGGACGGAGGAGTTTCCTGGGGCGAG GGGTTTCTGGATGGTTTTGACGGATTTATCCTTACTCTTAAGCCGTCGTC CGATAGAGGTCGTCCGTCCCCCCGTCTACCGTCCCCCGCCCCCGCCATCA ACTCCGCACCGACTTCCCCCCCTCATTCCCCCCCTCTTGGCGTATGCGCG AACCGCAGGTGTTGACCTTTGGACCCCCGGTCGTTGCGAGCCTGAGGCGG CGCCACCCCTCAGTCTTCCTGGACGTTCACCTGGCGGTCGACAGTCCCCA CGAGTATGTCGACAGCCTCAAGGATGCTGGGGCGAGCCAGGTCTTGTTCC ACCCCGAGGCTATGGCGTGCGATCCCGAGCGGGTCTCGGCACTGGTGAGT ACCAAGCCGGCACTTCGGCGCACCCTGGCATCCTGATGCCTTGGAAATCC ATTTTCGGCGTTTTATTTTGTGTGTGCGCCCAATACTAAGGACGAGCGGA ACAAGAACTACCGCGCAGTTCATGTGGGCATAACGTTTGCGCGTGGAGAT AGTGATTGGTTGGAATACCTCGCGCGTGTGTGAGCTCTCTTGACCCTCGT CCTGACCCTTTCCAGTTGAGTCCGTGATATATGTAGACTCATCGATCCAT TATTTCCCACCCCCCACCCTGTGTGCGTCACCCCTGCGGTAGGCGTTCCA AATCAAGGAGGCGGGGATGAGAGCGGGTGTTGCCCTCAGACCCGACACGC CGACCTCGCTGATTCTGCATCTCTTGCAGCCGGAGCGGTTGCTGGATTCC GTCAACGTTCTCGCCGTCTCTCCAGGATTCGGTGGGCAGCGCTTCGACCC GGCCGTCCTACGGAAGGTAGAGGAGCTGCGATCCGTATGTCCGGAGCTGG ATATTCAGGTAAATGACCAAAGACTGCAGTAATAATGACCCAACCTTGTC GTCTTGCCCTATACACAAAGCAAGTAATAGTTCAATGGCGACGTCGTCAT CTTTCTATGCCTGTGCGTGTGTGAGGGGGTGAGAGCTAACTTCTCGATGA GAGCGCCAGCAAGGCTTTGGTGGGGGCGAGGGGGGAGGGAGAGTGTTGTT GTTTTGAAATTTCGTATCCCATATTCCGCATCGCCCTCTCCGCCTTCAAC CTTCTCCGAATAATGAAAATCCTCTGCCCCCCCCTTCCCCTATATCCCCG GAAAAAGGACGTTCGCAATGAAAACTCGTGGTGAATATTAAAAGGGGTAG CAGACGTTTTTGTAGGTGGAAAAGAGAAGATCATGAGGAACCACTAAAGT AAATTAGGATTAGGGAGAAGGACCTAGAGTTGATAAGTGTACGAAATTAT GAAACGAAGGAATAGGCTTCAAGAAATACTTTCATGGACTATACCAATGG ATGGATGGGTACATTCGGGACTGTTAATGGAGGCATCGGCTTTCGGAAAC GTTGACGGAGGTTTAGGAAGAAAGTAGGTTGGTGGGGAAGACGAGAACTA TTGTAATGTCAATGTGATTGTGGTTATGATGACTGTGAAGGCGTTATCTA CGTGTTGGTATGAAAAGGATATGACTAAAATGGGAATAGTTGAAGGTTGG GATATACATACTTCTGAAGCATGGGACAGTCATACAAAGGTGGTACCAGT ATCTAAAGCATGGTAAAATAAGATGCAAAACAGTATAGGAACAAAAATAT ATTTTGGCGCGACCTTTGTCAAAGGGACCGATTGGCCATCGGCGATCGAT CATTAACGTACAATGCTCGCGTCCTCCCGAGGACGCGTGACCAATAGGCT AAGAGTGAAGGAACGCACAGGTTGAGTACGACACTCCTCTCTCCATACAC ACACGAACATTCCTACCTGGCCCCTGACTAGCACGACACTGCACACCGAC GCCAGGTGGATGGCGGCGTGAGCGTCTCAACAGCCGCAGCGTGTGTCTCC GCCGGAGCGAACGTGCTCACGTCGGGGAGTTTCATCTTCGGTATTGATCG CGCCCTCGGCAGTGGGGTTGACGCCGCGTGCGCGGTGGAGGCTGTATCAC AGCTAAGGGAAGCGCTGACGGAGAGGTGGCCGTTGCACGGCGCGATATAA
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Coding sequence (CDS) from alignment at H-elongata_contig20879:454..2703+

>mRNA_H-elongata_contig20879.6019.1 ID=mRNA_H-elongata_contig20879.6019.1|Name=mRNA_H-elongata_contig20879.6019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig20879:454..2703+ (Himanthalia elongata Himel1 dioecious)
GTTAAGGGGAAAGTTAGCGCCTCGATTCTTGCCGCCGACGTGGCCGATCT
GTCGGGGGAGGTGTCGAGGGTCCTGGAGGCCGGCGCGGACTGGATTCACA
TGGACGTCGTTAAGGGGAAAGTTAGCGCCTCGATTCTTGCCGCCGACGTG
GCCGATCTGTCGGGGGAGGTGTCGAGGGTCCTGGAGGCCGGCGCGGACTG
GATTCACATGGACGTCGTGTTGACCTTTGGACCCCCGGTCGTTGCGAGCC
TGAGGCGGCGCCACCCCTCAGTCTTCCTGGACGTTCACCTGGCGGTCGAC
AGTCCCCACGAGTATGTCGACAGCCTCAAGGATGCTGGGGCGAGCCAGGT
CTTGTTCCACCCCGAGGCTATGGCGTGCGATCCCGAGCGGGTCTCGGCAC
TGGTGTTGACCTTTGGACCCCCGGTCGTTGCGAGCCTGAGGCGGCGCCAC
CCCTCAGTCTTCCTGGACGTTCACCTGGCGGTCGACAGTCCCCACGAGTA
TGTCGACAGCCTCAAGGATGCTGGGGCGAGCCAGGTCTTGTTCCACCCCG
AGGCTATGGCGTGCGATCCCGAGCGGGTCTCGGCACTGGCGTTCCAAATC
AAGGAGGCGGGGATGAGAGCGGGTGTTGCCCTCAGACCCGACACGCCGAC
CTCGCTGATTCTGCATCTCTTGCAGCCGGAGCGGTTGCTGGATTCCGTCA
ACGTTCTCGCCGTCTCTCCAGGATTCGGTGGGCAGCGCTTCGACCCGGCC
GTCCTACGGAAGGTAGAGGAGCTGCGATCCGTATGTCCGGAGCTGGATAT
TCAGGCGTTCCAAATCAAGGAGGCGGGGATGAGAGCGGGTGTTGCCCTCA
GACCCGACACGCCGACCTCGCTGATTCTGCATCTCTTGCAGCCGGAGCGG
TTGCTGGATTCCGTCAACGTTCTCGCCGTCTCTCCAGGATTCGGTGGGCA
GCGCTTCGACCCGGCCGTCCTACGGAAGGTAGAGGAGCTGCGATCCGTAT
GTCCGGAGCTGGATATTCAGGTGGATGGCGGCGTGAGCGTCTCAACAGCC
GCAGCGTGTGTCTCCGCCGGAGCGAACGTGCTCACGTCGGGGAGTTTCAT
CTTCGGTATTGATCGCGCCCTCGGCAGTGGGGTTGACGCCGCGTGCGCGG
TGGAGGCTGTATCACAGCTAAGGGAAGCGCTGACGGAGAGGTGGCCGTTG
CACGGCGCGATATAAGTGGATGGCGGCGTGAGCGTCTCAACAGCCGCAGC
GTGTGTCTCCGCCGGAGCGAACGTGCTCACGTCGGGGAGTTTCATCTTCG
GTATTGATCGCGCCCTCGGCAGTGGGGTTGACGCCGCGTGCGCGGTGGAG
GCTGTATCACAGCTAAGGGAAGCGCTGACGGAGAGGTGGCCGTTGCACGG
CGCGATATAA
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