mRNA_H-elongata_contig208694.6018.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: D8LS61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS61_ECTSI) HSP 1 Score: 119 bits (298), Expect = 6.370e-31 Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y+YG+TFFMGVRALLYPPFL+KTKIQV RG A SA+QVAR +VR EG+RGLYKGFWISS++LVFRQ YFTTYEV
Sbjct: 21 YSYGITFFMGVRALLYPPFLLKTKIQVARGGASEKSAFQVARATVREEGVRGLYKGFWISSTSLVFRQVYFTTYEV 96
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A7S3YF30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF30_HETAK) HSP 1 Score: 82.4 bits (202), Expect = 3.950e-18 Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 7 YGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
YG T F GVRA LYP L+KT++Q G S + + VR+EG GLYKGFW+SS LVFRQ YFTT+EV
Sbjct: 25 YGSTMFFGVRATLYPASLIKTRMQAASGEVYKSTWDAVKTIVRSEGPTGLYKGFWVSSFNLVFRQVYFTTFEV 97
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A7S2V638_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V638_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.860e-16 Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 7 YGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSAY----QVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
YG T FMGVR +LYPPF++KT++Q + SAY + VR EGIRGLYKGFWISS L FRQ YF +EV
Sbjct: 51 YGTTLFMGVRFVLYPPFVIKTRLQTQ-ALGNSSAYTGTAHAFKSIVRTEGIRGLYKGFWISSINLAFRQVYFAVFEV 126
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A2B4RT67_STYPI (Solute carrier family 25 member 44 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RT67_STYPI) HSP 1 Score: 72.0 bits (175), Expect = 3.560e-13 Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y +G TFF+G+RALLYP LVKT++QV+R A ++ + +R EG+RGLYKGF +SS L+ QFY TT E+
Sbjct: 19 YLFGPTFFLGIRALLYPANLVKTRLQVQRKKALYNGSFDAFVKVIRFEGVRGLYKGFMVSSFGLLSGQFYITTLEL 94
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: UPI00106B02A4 (solute carrier family 25 member 44-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B02A4) HSP 1 Score: 71.2 bits (173), Expect = 6.680e-13 Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y +G T F G+RA+LYPP L+KT++QV+R + + R V+ EGIRGLYKG+ +S+ +L+ Q Y TTYE+
Sbjct: 19 YVFGPTLFFGIRAVLYPPNLIKTRLQVQRKRSMYKGTFDAFRNIVKQEGIRGLYKGYLVSNFSLLSGQCYITTYEL 94
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A6S7IW13_PARCT (Solute carrier family 25 member 44-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IW13_PARCT) HSP 1 Score: 70.9 bits (172), Expect = 9.050e-13 Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y +G T F G+RALLYPP L+KT++QV++ A R V+ EGIRGLYKGF +S+ +++ Q Y TTYE+
Sbjct: 19 YIFGPTLFCGIRALLYPPNLIKTRLQVQKKRAMYKGTIDAFRNIVKLEGIRGLYKGFLVSNFSVLSGQLYITTYEL 94
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A8B9JEG9_ASTMX (Solute carrier family 25 member 44b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JEG9_ASTMX) HSP 1 Score: 68.9 bits (167), Expect = 3.030e-12 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSA-YQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y++G+ M +RA +YP L++T++QV++G S Y R+ +RAEG+RGLY+GF +++ TL+ Q Y TTYE+
Sbjct: 21 YSFGVFMTMTIRATVYPAMLIRTRLQVQKGKSLYSGTYDAFRKILRAEGVRGLYRGFMVNTFTLISGQAYITTYEL 96
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: UPI001CF3F204 (LOW QUALITY PROTEIN: solute carrier family 25 member 44-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3F204) HSP 1 Score: 68.9 bits (167), Expect = 4.810e-12 Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVER-GAKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y +G T F G+RALLYP LVKT++QV+R A ++ + +R EGIRGLYKGF +SS L+ QFY TT E+
Sbjct: 19 YFFGPTLFFGIRALLYPANLVKTRLQVQRKNALYKGSFDAFVKVLRYEGIRGLYKGFLVSSFGLLSGQFYITTLEM 94
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A2D0Q654_ICTPU (solute carrier family 25 member 44 isoform X1 n=10 Tax=Ostariophysi TaxID=32519 RepID=A0A2D0Q654_ICTPU) HSP 1 Score: 68.9 bits (167), Expect = 5.080e-12 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVERGAK-GMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y++G+ M +RA +YP L++T++QV++G + Y R+ +RAEGIRGLY+GF +++ TL+ Q Y TTYE+
Sbjct: 21 YSFGVFMTMTIRATVYPAMLIRTRLQVQKGKSLYIGTYDAFRKILRAEGIRGLYRGFMVNTFTLISGQAYITTYEL 96
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A3B1IL28_ASTMX (Solute carrier family 25 member 44b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IL28_ASTMX) HSP 1 Score: 68.9 bits (167), Expect = 6.600e-12 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 1 YTYGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSA-YQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
Y++G+ M +RA +YP L++T++QV++G S Y R+ +RAEG+RGLY+GF +++ TL+ Q Y TTYE+
Sbjct: 21 YSFGVFMTMTIRATVYPAMLIRTRLQVQKGKSLYSGTYDAFRKILRAEGVRGLYRGFMVNTFTLISGQAYITTYEL 96 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig208694.6018.1 >prot_H-elongata_contig208694.6018.1 ID=prot_H-elongata_contig208694.6018.1|Name=mRNA_H-elongata_contig208694.6018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp MGVRALLYPPFLVKTKIQVERGAKGMSAYQVARESVRAEGIRGLYKGFWIback to top mRNA from alignment at H-elongata_contig208694:300..986+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig208694.6018.1 ID=mRNA_H-elongata_contig208694.6018.1|Name=mRNA_H-elongata_contig208694.6018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at H-elongata_contig208694:300..986+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig208694:300..986+ >mRNA_H-elongata_contig208694.6018.1 ID=mRNA_H-elongata_contig208694.6018.1|Name=mRNA_H-elongata_contig208694.6018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig208694:300..986+ (Himanthalia elongata Himel1 dioecious)back to top |