mRNA_H-elongata_contig208694.6018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208694.6018.1
Unique NamemRNA_H-elongata_contig208694.6018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: D8LS61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS61_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.370e-31
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y+YG+TFFMGVRALLYPPFL+KTKIQV RG A   SA+QVAR +VR EG+RGLYKGFWISS++LVFRQ YFTTYEV
Sbjct:   21 YSYGITFFMGVRALLYPPFLLKTKIQVARGGASEKSAFQVARATVREEGVRGLYKGFWISSTSLVFRQVYFTTYEV 96          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A7S3YF30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF30_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 3.950e-18
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    7 YGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            YG T F GVRA LYP  L+KT++Q   G    S +   +  VR+EG  GLYKGFW+SS  LVFRQ YFTT+EV
Sbjct:   25 YGSTMFFGVRATLYPASLIKTRMQAASGEVYKSTWDAVKTIVRSEGPTGLYKGFWVSSFNLVFRQVYFTTFEV 97          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A7S2V638_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V638_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.860e-16
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    7 YGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSAY----QVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            YG T FMGVR +LYPPF++KT++Q +      SAY       +  VR EGIRGLYKGFWISS  L FRQ YF  +EV
Sbjct:   51 YGTTLFMGVRFVLYPPFVIKTRLQTQ-ALGNSSAYTGTAHAFKSIVRTEGIRGLYKGFWISSINLAFRQVYFAVFEV 126          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A2B4RT67_STYPI (Solute carrier family 25 member 44 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RT67_STYPI)

HSP 1 Score: 72.0 bits (175), Expect = 3.560e-13
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y +G TFF+G+RALLYP  LVKT++QV+R  A    ++    + +R EG+RGLYKGF +SS  L+  QFY TT E+
Sbjct:   19 YLFGPTFFLGIRALLYPANLVKTRLQVQRKKALYNGSFDAFVKVIRFEGVRGLYKGFMVSSFGLLSGQFYITTLEL 94          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: UPI00106B02A4 (solute carrier family 25 member 44-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B02A4)

HSP 1 Score: 71.2 bits (173), Expect = 6.680e-13
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y +G T F G+RA+LYPP L+KT++QV+R  +     +   R  V+ EGIRGLYKG+ +S+ +L+  Q Y TTYE+
Sbjct:   19 YVFGPTLFFGIRAVLYPPNLIKTRLQVQRKRSMYKGTFDAFRNIVKQEGIRGLYKGYLVSNFSLLSGQCYITTYEL 94          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A6S7IW13_PARCT (Solute carrier family 25 member 44-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IW13_PARCT)

HSP 1 Score: 70.9 bits (172), Expect = 9.050e-13
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVERG-AKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y +G T F G+RALLYPP L+KT++QV++  A         R  V+ EGIRGLYKGF +S+ +++  Q Y TTYE+
Sbjct:   19 YIFGPTLFCGIRALLYPPNLIKTRLQVQKKRAMYKGTIDAFRNIVKLEGIRGLYKGFLVSNFSVLSGQLYITTYEL 94          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A8B9JEG9_ASTMX (Solute carrier family 25 member 44b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JEG9_ASTMX)

HSP 1 Score: 68.9 bits (167), Expect = 3.030e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSA-YQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y++G+   M +RA +YP  L++T++QV++G    S  Y   R+ +RAEG+RGLY+GF +++ TL+  Q Y TTYE+
Sbjct:   21 YSFGVFMTMTIRATVYPAMLIRTRLQVQKGKSLYSGTYDAFRKILRAEGVRGLYRGFMVNTFTLISGQAYITTYEL 96          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: UPI001CF3F204 (LOW QUALITY PROTEIN: solute carrier family 25 member 44-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3F204)

HSP 1 Score: 68.9 bits (167), Expect = 4.810e-12
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVER-GAKGMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y +G T F G+RALLYP  LVKT++QV+R  A    ++    + +R EGIRGLYKGF +SS  L+  QFY TT E+
Sbjct:   19 YFFGPTLFFGIRALLYPANLVKTRLQVQRKNALYKGSFDAFVKVLRYEGIRGLYKGFLVSSFGLLSGQFYITTLEM 94          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A2D0Q654_ICTPU (solute carrier family 25 member 44 isoform X1 n=10 Tax=Ostariophysi TaxID=32519 RepID=A0A2D0Q654_ICTPU)

HSP 1 Score: 68.9 bits (167), Expect = 5.080e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVERGAK-GMSAYQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y++G+   M +RA +YP  L++T++QV++G    +  Y   R+ +RAEGIRGLY+GF +++ TL+  Q Y TTYE+
Sbjct:   21 YSFGVFMTMTIRATVYPAMLIRTRLQVQKGKSLYIGTYDAFRKILRAEGIRGLYRGFMVNTFTLISGQAYITTYEL 96          
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Match: A0A3B1IL28_ASTMX (Solute carrier family 25 member 44b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IL28_ASTMX)

HSP 1 Score: 68.9 bits (167), Expect = 6.600e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 YTYGLTFFMGVRALLYPPFLVKTKIQVERGAKGMSA-YQVARESVRAEGIRGLYKGFWISSSTLVFRQFYFTTYEV 225
            Y++G+   M +RA +YP  L++T++QV++G    S  Y   R+ +RAEG+RGLY+GF +++ TL+  Q Y TTYE+
Sbjct:   21 YSFGVFMTMTIRATVYPAMLIRTRLQVQKGKSLYSGTYDAFRKILRAEGVRGLYRGFMVNTFTLISGQAYITTYEL 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208694.6018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS61_ECTSI6.370e-3178.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YF30_HETAK3.950e-1856.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V638_9STRA1.860e-1655.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2B4RT67_STYPI3.560e-1351.32Solute carrier family 25 member 44 n=2 Tax=Pocillo... [more]
UPI00106B02A46.680e-1347.37solute carrier family 25 member 44-like n=1 Tax=De... [more]
A0A6S7IW13_PARCT9.050e-1348.68Solute carrier family 25 member 44-like n=1 Tax=Pa... [more]
A0A8B9JEG9_ASTMX3.030e-1243.42Solute carrier family 25 member 44b n=1 Tax=Astyan... [more]
UPI001CF3F2044.810e-1251.32LOW QUALITY PROTEIN: solute carrier family 25 memb... [more]
A0A2D0Q654_ICTPU5.080e-1243.42solute carrier family 25 member 44 isoform X1 n=10... [more]
A0A3B1IL28_ASTMX6.600e-1243.42Solute carrier family 25 member 44b n=1 Tax=Astyan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208694contigH-elongata_contig208694:300..986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue7.7e-21
Seed eggNOG ortholog2880.D8LS61
Preferred nameSLC25A44
KEGG koko:K15121
KEGG TC2.A.29
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0019867,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098588,GO:0098805
EggNOG free text desc.transmembrane transport
EggNOG OGsKOG0765@1,KOG0765@2759
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-12_004710.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208694.6018.1prot_H-elongata_contig208694.6018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208694 324..986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.0083153-UTR-H-elongata_contig208694:299..3231622930167.0083153-UTR-H-elongata_contig208694:299..323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig208694 300..323 +
1691679306.0156424-UTR-H-elongata_contig208694:299..3231691679306.0156424-UTR-H-elongata_contig208694:299..323Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig208694 300..323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.0213192-CDS-H-elongata_contig208694:323..4611622930167.0213192-CDS-H-elongata_contig208694:323..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208694 324..461 +
1691679306.0316339-CDS-H-elongata_contig208694:323..4611691679306.0316339-CDS-H-elongata_contig208694:323..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208694 324..461 +
1622930167.0398984-CDS-H-elongata_contig208694:914..9861622930167.0398984-CDS-H-elongata_contig208694:914..986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208694 915..986 +
1691679306.0489984-CDS-H-elongata_contig208694:914..9861691679306.0489984-CDS-H-elongata_contig208694:914..986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208694 915..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208694.6018.1

>prot_H-elongata_contig208694.6018.1 ID=prot_H-elongata_contig208694.6018.1|Name=mRNA_H-elongata_contig208694.6018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MGVRALLYPPFLVKTKIQVERGAKGMSAYQVARESVRAEGIRGLYKGFWI
SSSTLVFRQFYFTTYEVRAS
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mRNA from alignment at H-elongata_contig208694:300..986+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208694.6018.1 ID=mRNA_H-elongata_contig208694.6018.1|Name=mRNA_H-elongata_contig208694.6018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at H-elongata_contig208694:300..986+ (Himanthalia elongata Himel1 dioecious)
TATACCTATGGATTGACTTTTTTCATGGGAGTGAGAGCGCTGCTTTACCC GCCGTTCCTGGTAAAAACTAAGATTCAAGTAGAGAGGGGAGCCAAGGGAA TGTCGGCATACCAAGTCGCGAGGGAAAGCGTTCGGGCCGAGGGAATCAGA GGTCTCTACAAGGTATATATATGTGTGTGTGTGTGTCATCTACGGAAGCA GCCCTTTCGCTTGTCTAGTGGCGAAAAGCTGCTGCATCCTGACACCAATT TTAGCGCGAGGTTTTGTGTCGCTCTCTTTACACTAGATATTGCCGTATAA TGTTTCGTCTGTGTCTTCGTGTTCGCTCCGAAAGCCTCCGGGCTTGCCTA TGCATGAGATGACGCTATGATTATATCCGCTTTTCGGATTTCGTCGCCGT TCAAGGCCGTTGCGACCACTCAAGGCGCCGTCTCTCTCTTCCCTGACCGT CTAGTGATCGGCTTCCCCGTCGACCGGCTGTGTGCATCAGGGTGTAGTGG TGGTCCCGTTGTGAGGAACCGGTTCACCATCTTATCCCTTACTCTGGCGT CCTTCCTCAGCATGGCACGCTGTGCATCGTGTGTGTGCGTGTGTATTTTC TTTGTCTTGTGACAGGGTTTCTGGATAAGCTCGTCAACCTTGGTGTTTCG ACAGTTCTACTTCACAACGTACGAGGTGCGCGCATCG
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Coding sequence (CDS) from alignment at H-elongata_contig208694:300..986+

>mRNA_H-elongata_contig208694.6018.1 ID=mRNA_H-elongata_contig208694.6018.1|Name=mRNA_H-elongata_contig208694.6018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig208694:300..986+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGTGAGAGCGCTGCTTTACCCGCCGTTCCTGGTAAAAACTAAGAT
TCAAGTAGAGAGGGGAGCCAAGGGAATGTCGGCATACCAAGTCGCGAGGG
AAAGCGTTCGGGCCGAGGGAATCAGAGGTCTCTACAAGATGGGAGTGAGA
GCGCTGCTTTACCCGCCGTTCCTGGTAAAAACTAAGATTCAAGTAGAGAG
GGGAGCCAAGGGAATGTCGGCATACCAAGTCGCGAGGGAAAGCGTTCGGG
CCGAGGGAATCAGAGGTCTCTACAAGGGTTTCTGGATAAGCTCGTCAACC
TTGGTGTTTCGACAGTTCTACTTCACAACGTACGAGGTGCGCGCATCGGG
TTTCTGGATAAGCTCGTCAACCTTGGTGTTTCGACAGTTCTACTTCACAA
CGTACGAGGTGCGCGCATCG
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