mRNA_H-elongata_contig20866.6017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20866.6017.1
Unique NamemRNA_H-elongata_contig20866.6017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20866.6017.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 8.040e-40
Identity = 95/227 (41.85%), Postives = 129/227 (56.83%), Query Frame = 1 
Query:  175 HTDSVHLNLFPGSSRFPHSLASLMDGCVPVERGF----TTLHHEST*ILERFGLFFXXXXXFQGC*QSLQGVN--ILRNVVVVRDPRNVVMSERRMRIEYYKDDLALQ-ASIDDFVSARFEALTSWTHQRWEWHSCDAMKSSSHIVFYEELQASHMGLVDVAYFLGLECTPEQAWRIWEAHRKVNSPSRDYSTQGLLPETVEFMNATMAKLLPVPLVLRYGLIPSDV 834
            H D    +  PG    PH      +G  P E  F      L  E T   ER             C Q +  V+  + R++V++RDPR+V MSER MR++YY+D   ++ A+ D F   RFE L SWTHQR+ WH+   M  SSH+VFYE+L+  H G + +A F+GL C+ E A  +W AHR   +P  DYST GL  ETV++MN TMA+LLP  L LR+G+ P+D+
Sbjct:  163 HFDGNGKHYIPGMKGEPHPGCD--NGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTSAL--CVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNP-APHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384
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BLAST of mRNA_H-elongata_contig20866.6017.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 4.960e-38
Identity = 92/227 (40.53%), Postives = 127/227 (55.95%), Query Frame = 1 
Query:  175 HTDSVHLNLFPGSSRFPHSLASLMDGCVPVERGF----TTLHHEST*ILERFGLFFXXXXXFQGC*QSLQGVN--ILRNVVVVRDPRNVVMSERRMRIEYYKDDLALQASIDD-FVSARFEALTSWTHQRWEWHSCDAMKSSSHIVFYEELQASHMGLVDVAYFLGLECTPEQAWRIWEAHRKVNSPSRDYSTQGLLPETVEFMNATMAKLLPVPLVLRYGLIPSDV 834
            H D    +  PG    PH      +G  P E  F      L  E T   ER             C Q +  V+  + R++V++RDPR+V MSER MRI+YY++   ++ +  D F   RFE L SWTHQR+ WH+   M  SSH+VFYE+L+  H G + +A F+GL C+ E A  +W AHR   +P  DYST GL  ET+++MN TMA+LLP  L  R+G+ P+D+
Sbjct:  229 HFDGNGKHYIPGMKGEPHPGCD--NGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTSAL--CVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNP-APHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450
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BLAST of mRNA_H-elongata_contig20866.6017.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.160e-36
Identity = 74/177 (41.81%), Postives = 107/177 (60.45%), Query Frame = 1 
Query:  388 RNVVVVRDPRNVVMSERRMRIEYYKDDLALQASIDDFVSARFEALTSWTHQRWEWHSCDAMKSSSHIVFYEELQ-----------------------------ASHMGLVDVAYFLGLECTPEQAWRIWEAHRKVNSPSRDYSTQGLLPETVEFMNATMAKLLPVPLVLRYGLIPSD 831
            R  V++RDPR+VV+SE RMR +YY  +  +  S+DDF+  RF+ + SWTHQRW WH+   +  SSH++FY++LQ                             A+ MG++D+A F+GLEC+ +QA  +WE+H+    P  DY+T GL   T+E+MNATMA LLP  + L +GL P+D
Sbjct:  123 RTAVMLRDPRDVVLSEFRMRRDYYHQEEVMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNA-IPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 298
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BLAST of mRNA_H-elongata_contig20866.6017.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.110e-36
Identity = 73/152 (48.03%), Postives = 107/152 (70.39%), Query Frame = 1 
Query:  382 ILRNVVVVRDPRNVVMSERRMRIEYYKDDLALQA-SIDDFVSARFEALTSWTHQRWEWHSCDAMKSSSHIVFYEELQASHMGLVDVAYFLGLECTPEQAWRIWEAHRKVNSPSRDYSTQGLLPETVEFMNATMAKLLPVPLVLRYGLIPSDV 834
            + R++V++RDPRNVV+SE  MR +  + +   +  S+D+F+  +FE L SW HQR+ WH+   M  SSHI  YEELQ SH+GL+D+A F+GL+C+ +QA ++W   R   SPS  Y+++GL  ETV FMNATMA+LLP  L LR+ + P+++
Sbjct:  148 VRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHP-SPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 298
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BLAST of mRNA_H-elongata_contig20866.6017.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.120e-33
Identity = 67/152 (44.08%), Postives = 111/152 (73.03%), Query Frame = 1 
Query:  382 ILRNVVVVRDPRNVVMSERRMRIE-YYKDDLALQASIDDFVSARFEALTSWTHQRWEWHSCDAMKSSSHIVFYEELQASHMGLVDVAYFLGLECTPEQAWRIWEAHRKVNSPSRDYSTQGLLPETVEFMNATMAKLLPVPLVLRYGLIPSDV 834
            + R++V+ RDPR+VV+SE +MR + +++D      S+++FV  +FE L SW HQR+ WH+ D M  SSH+ FY+ELQ S +G V +A  +GLEC+ +QA+++W+AH++  SP+  ++T+ L   T++FMNATMA+LLP  + +++GL P+++
Sbjct:  251 VRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQA-SPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTEL 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20866.6017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXT7_ECTSI8.040e-4041.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6E2_9PHAE4.960e-3840.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLX3_9PHAE1.160e-3641.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JZR3_9PHAE2.110e-3648.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE1.120e-3344.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20866contigH-elongata_contig20866:32..3138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2345
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20866.6017.1prot_H-elongata_contig20866.6017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20866 458..1630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.8705916-UTR-H-elongata_contig20866:31..4571622930166.8705916-UTR-H-elongata_contig20866:31..457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20866 32..457 +
1691679305.96562-UTR-H-elongata_contig20866:31..4571691679305.96562-UTR-H-elongata_contig20866:31..457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20866 32..457 +
1622930166.946902-UTR-H-elongata_contig20866:1630..31381622930166.946902-UTR-H-elongata_contig20866:1630..3138Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20866 1631..3138 +
1691679306.0047412-UTR-H-elongata_contig20866:1630..31381691679306.0047412-UTR-H-elongata_contig20866:1630..3138Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20866 1631..3138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.8929029-CDS-H-elongata_contig20866:457..5471622930166.8929029-CDS-H-elongata_contig20866:457..547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20866 458..547 +
1691679305.9751143-CDS-H-elongata_contig20866:457..5471691679305.9751143-CDS-H-elongata_contig20866:457..547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20866 458..547 +
1622930166.908888-CDS-H-elongata_contig20866:968..10611622930166.908888-CDS-H-elongata_contig20866:968..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20866 969..1061 +
1691679305.9851236-CDS-H-elongata_contig20866:968..10611691679305.9851236-CDS-H-elongata_contig20866:968..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20866 969..1061 +
1622930166.925409-CDS-H-elongata_contig20866:1402..16301622930166.925409-CDS-H-elongata_contig20866:1402..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20866 1403..1630 +
1691679305.9950159-CDS-H-elongata_contig20866:1402..16301691679305.9950159-CDS-H-elongata_contig20866:1402..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20866 1403..1630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20866.6017.1

>prot_H-elongata_contig20866.6017.1 ID=prot_H-elongata_contig20866.6017.1|Name=mRNA_H-elongata_contig20866.6017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MSERRMRIEYYKDDLALQASIDDFVSARFEALTSWTHQRWEWHSCDAMKS
SSHIVFYEELQASHMGLVDVAYFLGLECTPEQAWRIWEAHRKVNSPSRDY
STQGLLPETVEFMNATMAKLLPVPLVLRYGLIPSDV*
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mRNA from alignment at H-elongata_contig20866:32..3138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20866.6017.1 ID=mRNA_H-elongata_contig20866.6017.1|Name=mRNA_H-elongata_contig20866.6017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3107bp|location=Sequence derived from alignment at H-elongata_contig20866:32..3138+ (Himanthalia elongata Himel1 dioecious)
CCCCCCAGAATAAACAAAACAAAACACTTTATAGTGTTCGGAGGTCTTTT
CCACGATTGATTGGTGGGCGTTGCTGCCGAGCGAGGCACCTGTGGCGTAT
GGCATCTCTCAGTGAGGGTTGGTAACCCACGGGAGGTGTAGCAAGGGGGT
TCATGTATTGGCGTAAGAGGGCGTCATACCGATTCCGTGCATCTGAACTT
GTTTCCTGGCTCGTCGAGATTCCCGCACAGTCTAGCATCGTTGATGGATG
GGTGTGTGCCCGTTGAGCGTGGTTTCACGACCCTGCATCACGAGTCGACG
TAGATTCTTGAACGTTTTGGCCTCTTTTTTTTCTTCTTCTTTTTTTTCCA
GGGCTGCTAACAATCCCTTCAAGGTGTGAATATCCTCAGGAATGTGGTCG
TTGTGCGGGATCCGCGGAACGTGGTCATGTCTGAGCGGAGGATGCGGATT
GAATATTACAAAGACGACCTCGCCTTGCAAGCATCGATCGACGACTTCGT
ATCAGCTCGCTTCGAGGTGTGTGTGAAGATGTAAAGATGTATGTGGGTGT
CTATATTGAGAGTAATCATGGAATAAAGTAGTAACCCGGAGCCTCGCTTG
TTAAGCACTTCCCTGTGAGAGGAAGCTTGTCCTGTCTCACGATTCTTTCT
GCTGCGCACGAAATCTGGTTTTCGCGTTTTGCGAGAGAAAATCGAGCACC
GATGTTCGCCCTCGCAGTCGGAACTTCGCCGGTGTAGGCGAACAACCCGT
TATCTCACTGAAATCTGGCAGTTCTTACCTCTTACGTCATAGTCCAAGCG
CTGGTAGCGGGTAGTGTAGGATTTCCCACATCGTATAGTCGGACGTCAGA
ACCCCACCCCCATCGCTTTTATATTTCCTCTATGAGAGCGCAATCAATCG
CGCGTTCAACATCGTGTGCTTGCTCTGTTTGGCGCAGGCGCTGACGTCAT
GGACGCACCAGCGGTGGGAATGGCATAGTTGCGACGCGATGAAAAGCTCA
TCTCACATCGTCTTCTACGAAGAACTTCAGGTGAGACGCGGATCGATTGA
TGTCTCGACCTTTGGGACTGTATGATGCTTCTAGGAGGCGTTCGAGTTGG
GGGGAAGGAAGGAGTGTCTTGTCGTGGGGGGGGGGGGGGGGGCCCTTACC
GTCTTTCATTGATGCAACGCCATTGTAGCTAGCCAGCCTCGACCGCACAT
CACTACGCGAACCTCGCGACGTTTACAGCAATCGATACATTTCCAGAAAC
TATTATCTAAGTAGCTATCTATCTGTGCCTAAAGAAAGAAACGATAAAGT
TCCCGCGTTCGTCCAGGTGATCGTACGACCCCCCCCCCCACCTCACCCTT
CCCCCACTCGTTACCCCCCAGGCGAGTCACATGGGACTGGTGGATGTCGC
GTACTTCCTGGGCCTCGAGTGTACTCCAGAGCAGGCGTGGCGCATTTGGG
AAGCGCACCGAAAAGTGAACTCTCCGTCTCGCGACTATTCAACCCAAGGC
CTTCTCCCCGAAACCGTTGAGTTCATGAACGCGACCATGGCGAAGCTTCT
CCCGGTACCTCTGGTGCTCCGCTATGGCCTTATCCCGAGTGACGTCTGAT
TGGACAAACCCTCCCCCTGCGAAACGGTAGGGTCTCCGCGTGTCCAGGGA
TCTGTGTGACCTGATGAACAGGTGGGGATTGGGTTTTATAGTGCCTGGGA
AAAGTGTGTGCGGGGATAGGGGTAAGGGGAGAGTTCGCTGTGTCTTGTTA
TTGAGTCTGTTCGGGCCTTTTGTAAAACGGTTTTGGGGGCCTATCCGGGC
CTTTCGTAAAAAAAAACATTTTTGTAGGTAGTGAGAATTGTATCATGATT
TTGGGCGTATAATATATAGTAAATCATAGTACATTATAGTATATATCTAT
TGATCTATTTATATTTATATATTTATTTATTTTTCACATAGACTTTTAAT
GCGAACAACATCTGCCGCCGTTCTCTCTTACAAAGAGAATGCCGAGTGTA
TCTGTGGCAGGTAGCAAGTCCTGTCGATGACTTCGTCGCATCTTTTCAGC
GATGTTGTGACGGTGCATTTCCCAGCGGGGCATGTTTCTCTTAAAAACAA
TATGGCATTGAAGTCCCCCTTCCCCCCCCCCCCCTCCCCCAGCTGTTAGG
CGTGGTAACATATTTTTCGTCATCATGCCATCTCGTTTTGCGATAATTTT
TTACAGTTATCCCGTAATTGGTACTGTAGAAGCATGATGTATTGATCGTT
TGTCGTTTTAGGCCGGATGTGGTTCAAACAATCCGGAGGTCATTTGGGTT
CGATCCCGATTGCCAGTGCAACCCCAAGCGATTTGATCAAGACGGCCGAT
CATGGCCACAGGCAGAGAGAGAGAGAGAAAGAGATAGAGGGTATTCCACG
AGTTATGTATATCGTCAAGCTTGTCGCATCTTACCGGGGGGGGGGGATCC
TATTGTAGCAGAGCCAGGGGACAATATCCTACTACAGTATTTGTTCGCGT
CTGTTTTTTTTGCTTACTGTTTGTTGTTTTGTGTCGATTTTATGGCACAA
TCTTTGAACTCAAGGCATAGATAGCTCTCGAAAATTGTTACTCGTGCGGT
GCGCAAGGAACAATACTATGGCATGTCTCGTAAAACACCCCCGTCAGGCA
GCGGGAAACGCCCGTACTCTTCGTCCTTCCTAGGGAATAAAATAATCGAG
TGACTCGGGCAAGTTGCGAGGGCGGAGGACTTGATGTTGAGGGTTTGGTG
AAAGTGCGCTCGCTGTTGATGCTCTGCTGCTACTGCTACTGCTGCTGCTG
TAGTCGTTCATGTAGACGGTTTCGTTGCAGAGTCGTCGTGATTGGCAGTA
GGGCACAGCTCCGTTGGCGCTCGCTCCTTGATGATCCTCTTATTGGAATT
AACGGTATTATCGTGCGTGGGAGAAGTATGTTCCTTTCACCGGTGTGTAC
CAACTGTGTACCAACCGACTGTGTTTTTGACGATGAACTGAGTCAGCGCA
GAAAAGGACTTCCATTATCCACCTCGTCTTCTGGGACGTTGCTTATGGGG
GGGTGCGCATCAGCGTGTGATGATCACTGTCTCAACAGAATCAAGAGTAA
AACGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig20866:32..3138+

>mRNA_H-elongata_contig20866.6017.1 ID=mRNA_H-elongata_contig20866.6017.1|Name=mRNA_H-elongata_contig20866.6017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig20866:32..3138+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGAGCGGAGGATGCGGATTGAATATTACAAAGACGACCTCGCCTT
GCAAGCATCGATCGACGACTTCGTATCAGCTCGCTTCGAGATGTCTGAGC
GGAGGATGCGGATTGAATATTACAAAGACGACCTCGCCTTGCAAGCATCG
ATCGACGACTTCGTATCAGCTCGCTTCGAGGCGCTGACGTCATGGACGCA
CCAGCGGTGGGAATGGCATAGTTGCGACGCGATGAAAAGCTCATCTCACA
TCGTCTTCTACGAAGAACTTCAGGCGCTGACGTCATGGACGCACCAGCGG
TGGGAATGGCATAGTTGCGACGCGATGAAAAGCTCATCTCACATCGTCTT
CTACGAAGAACTTCAGGCGAGTCACATGGGACTGGTGGATGTCGCGTACT
TCCTGGGCCTCGAGTGTACTCCAGAGCAGGCGTGGCGCATTTGGGAAGCG
CACCGAAAAGTGAACTCTCCGTCTCGCGACTATTCAACCCAAGGCCTTCT
CCCCGAAACCGTTGAGTTCATGAACGCGACCATGGCGAAGCTTCTCCCGG
TACCTCTGGTGCTCCGCTATGGCCTTATCCCGAGTGACGTCTGAGCGAGT
CACATGGGACTGGTGGATGTCGCGTACTTCCTGGGCCTCGAGTGTACTCC
AGAGCAGGCGTGGCGCATTTGGGAAGCGCACCGAAAAGTGAACTCTCCGT
CTCGCGACTATTCAACCCAAGGCCTTCTCCCCGAAACCGTTGAGTTCATG
AACGCGACCATGGCGAAGCTTCTCCCGGTACCTCTGGTGCTCCGCTATGG
CCTTATCCCGAGTGACGTCTGA
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