mRNA_H-elongata_contig208644.6016.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208644.6016.1
Unique NamemRNA_H-elongata_contig208644.6016.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: D8LRZ5_ECTSI (DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.970e-18
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 EERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            EE D  V EL AS    A+QLQRFKGLGEMMP QLW+TTMDPA+R LKLVTVEDAAAA+R
Sbjct:  601 EECDSAVSELPASP---AVQLQRFKGLGEMMPQQLWDTTMDPARRTLKLVTVEDAAAADR 657
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: A0A1F8DTW7_9BACT (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Candidatus Wolfebacteria TaxID=1752735 RepID=A0A1F8DTW7_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 5.850e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 EERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            EE++K+  E T + T   I +QR+KGLGEM P QLWETTMDPA R+LK VT+EDA  A+R
Sbjct:  990 EEKEKIAAEFTKAKTQGGISIQRYKGLGEMNPQQLWETTMDPATRLLKRVTIEDAQEADR 1049
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: A0A2R6FTL2_9EURY (DNA topoisomerase IV subunit B (Fragment) n=1 Tax=Halobacteriales archaeon QH_9_66_26 TaxID=1919166 RepID=A0A2R6FTL2_9EURY)

HSP 1 Score: 73.2 bits (178), Expect = 1.920e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    4 ERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            ERD++V E+   +     Q+QRFKGLGEM PDQLWETTM+P  RILK +T+EDAAAA++
Sbjct:   17 ERDRIVEEVCGGTPD---QVQRFKGLGEMNPDQLWETTMNPENRILKQITLEDAAAADK 72
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: A0A2E6HIA4_9EURY (DNA gyrase subunit B n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6HIA4_9EURY)

HSP 1 Score: 77.4 bits (189), Expect = 3.780e-15
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 EERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            EERD V+ EL   S  A I +QR+KGLGEM P+QLWETTMDPA R L  VTVEDA+ A+R
Sbjct:  570 EERDVVIEELRGESENAKINIQRYKGLGEMNPEQLWETTMDPAVRTLLQVTVEDASEADR 629
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: A0A5Q4FVS4_9ACTN (DNA gyrase subunit B n=1 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A5Q4FVS4_9ACTN)

HSP 1 Score: 76.3 bits (186), Expect = 9.630e-15
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 ERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAE 177
            ERD +V  +  +     I++QRFKGLGEM PDQLWETTMDP +R LKLVT++DAAAAE
Sbjct:  582 ERDAIVRTIRETVPDKKIEVQRFKGLGEMDPDQLWETTMDPERRTLKLVTLDDAAAAE 639
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: A0A3D3L677_9BACT (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A3D3L677_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 9.660e-15
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 ERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAE 177
            E++ VVG +   + +  I +QR+KGLGEM PDQLW+TTMDP KR L+ VTVEDAA A+
Sbjct:  100 EKEMVVGRMEKDNKSQKINIQRYKGLGEMNPDQLWDTTMDPEKRTLQKVTVEDAAKAQ 157
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: V4Y0V2_9ARCH (Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit (Fragment) n=1 Tax=uncultured archaeon A07HB70 TaxID=1412872 RepID=V4Y0V2_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-14
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    4 ERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            ERD++V E    S     Q+QRFKGLGEM PDQLWETTM+P  R+LK VT EDAAAA++
Sbjct:   59 ERDRIVAEECDGSPD---QVQRFKGLGEMNPDQLWETTMNPENRVLKRVTTEDAAAADK 114
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: A0A1H6RMF9_9EURY (DNA gyrase subunit B n=2 Tax=Halohasta litchfieldiae TaxID=1073996 RepID=A0A1H6RMF9_9EURY)

HSP 1 Score: 75.9 bits (185), Expect = 1.320e-14
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 EERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            E+RD+++ E    +     Q+QRFKGLGEM PDQLWETTMDP  RILK +T+EDAAAA+R
Sbjct:  564 EDRDRIIEEKCNGNPT---QVQRFKGLGEMNPDQLWETTMDPENRILKRITIEDAAAADR 620
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: UPI0010FB7ED6 (DNA topoisomerase (ATP-hydrolyzing) subunit B n=1 Tax=Halalkalirubrum salinum TaxID=2563889 RepID=UPI0010FB7ED6)

HSP 1 Score: 75.9 bits (185), Expect = 1.320e-14
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    4 ERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            ERD++V E    +     Q+QRFKGLGEM PDQLWETTMDP  RILK +T+EDAAAA+R
Sbjct:  737 ERDRIVEEKCNGNPT---QVQRFKGLGEMNPDQLWETTMDPENRILKRITIEDAAAADR 792
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BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Match: A0A498G441_9EURY (DNA topoisomerase IV subunit B (Fragment) n=1 Tax=Halobellus sp. Atlit-38R TaxID=2282131 RepID=A0A498G441_9EURY)

HSP 1 Score: 72.4 bits (176), Expect = 1.780e-14
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    4 ERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLVTVEDAAAAER 180
            ERD+++ E          Q+QRFKGLGEM PDQLW+TTM+P  R+LK +TVEDAAAA+R
Sbjct:   82 ERDRIIEE---ECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADR 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208644.6016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRZ5_ECTSI3.970e-1875.00DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A1F8DTW7_9BACT5.850e-1660.00DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Candid... [more]
A0A2R6FTL2_9EURY1.920e-1561.02DNA topoisomerase IV subunit B (Fragment) n=1 Tax=... [more]
A0A2E6HIA4_9EURY3.780e-1565.00DNA gyrase subunit B n=1 Tax=Euryarchaeota archaeo... [more]
A0A5Q4FVS4_9ACTN9.630e-1563.79DNA gyrase subunit B n=1 Tax=Nitriliruptor sp. Tax... [more]
A0A3D3L677_9BACT9.660e-1558.62DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
V4Y0V2_9ARCH1.080e-1462.71Type IIA topoisomerase (DNA gyrase/topo II, topois... [more]
A0A1H6RMF9_9EURY1.320e-1461.67DNA gyrase subunit B n=2 Tax=Halohasta litchfieldi... [more]
UPI0010FB7ED61.320e-1464.41DNA topoisomerase (ATP-hydrolyzing) subunit B n=1 ... [more]
A0A498G441_9EURY1.780e-1459.32DNA topoisomerase IV subunit B (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208644contigH-elongata_contig208644:591..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue4.2e-15
Seed eggNOG ortholog2880.D8LRZ5
KEGG koko:K02470,ko:K03164
KEGG Pathwayko01524,map01524
GOsGO:0000819,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006276,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0022402,GO:0030541,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140097,GO:1901360
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.816039-CDS-H-elongata_contig208644:590..7731622930166.816039-CDS-H-elongata_contig208644:590..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208644 591..773 +
1691679305.9520574-CDS-H-elongata_contig208644:590..7731691679305.9520574-CDS-H-elongata_contig208644:590..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208644 591..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208644.6016.1prot_H-elongata_contig208644.6016.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208644 591..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208644.6016.1

>prot_H-elongata_contig208644.6016.1 ID=prot_H-elongata_contig208644.6016.1|Name=mRNA_H-elongata_contig208644.6016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
EERDKVVGELTASSTAAAIQLQRFKGLGEMMPDQLWETTMDPAKRILKLV
TVEDAAAAER*
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mRNA from alignment at H-elongata_contig208644:591..773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208644.6016.1 ID=mRNA_H-elongata_contig208644.6016.1|Name=mRNA_H-elongata_contig208644.6016.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig208644:591..773+ (Himanthalia elongata Himel1 dioecious)
GAGGAGCGCGACAAAGTTGTCGGCGAGCTAACGGCATCATCGACAGCGGC
GGCGATTCAGCTGCAGCGTTTCAAGGGCCTAGGAGAGATGATGCCGGACC
AGCTCTGGGAGACGACTATGGACCCCGCGAAACGAATCCTCAAGCTCGTG
ACGGTCGAGGACGCAGCGGCGGCTGAACGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig208644:591..773+

>mRNA_H-elongata_contig208644.6016.1 ID=mRNA_H-elongata_contig208644.6016.1|Name=mRNA_H-elongata_contig208644.6016.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig208644:591..773+ (Himanthalia elongata Himel1 dioecious)
GAGGAGCGCGACAAAGTTGTCGGCGAGCTAACGGCATCATCGACAGCGGC
GGCGATTCAGCTGCAGCGTTTCAAGGGCCTAGGAGAGATGATGCCGGACC
AGCTCTGGGAGACGACTATGGACCCCGCGAAACGAATCCTCAAGCTCGTG
ACGGTCGAGGACGCAGCGGCGGCTGAACGGTGAGAGGAGCGCGACAAAGT
TGTCGGCGAGCTAACGGCATCATCGACAGCGGCGGCGATTCAGCTGCAGC
GTTTCAAGGGCCTAGGAGAGATGATGCCGGACCAGCTCTGGGAGACGACT
ATGGACCCCGCGAAACGAATCCTCAAGCTCGTGACGGTCGAGGACGCAGC
GGCGGCTGAACGGTGA
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