mRNA_H-elongata_contig20855.6012.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20855.6012.1 vs. uniprot
Match: D7FQQ9_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ9_ECTSI) HSP 1 Score: 559 bits (1441), Expect = 9.010e-185 Identity = 277/468 (59.19%), Postives = 344/468 (73.50%), Query Frame = 1
Query: 1 REVLPAASGHFKLSVVRNDVSFNTSCISYGASSTAISSVLEDLDPIGDLGGVMVVREGDGSST-YNFGFSYKISASNTNESLADSVKLAFVGSGIVSGCTRLSTLGYWDEANNWDVDAGSAQIFQVTLPSDAGFVTLTEDTAISTFEMNGGALITHDTTCLPGWSSAPGGTSASFGTHKCYRVFRNPMSWAKAQSACAIAVGMKETG-TRGGALSGALVTVQGLQENQWVQRLCRGE----DCWVGMTRSYRNDKVNASVFDLEWADVEVAMGDSRYRSWARREPSVVLEHDKGENCVAIRSSGRIAAEQGEARWYDAECDRMKPYVCQAFGVSQPFSLTVSTELNLTGGYIIGAGRVISSTLAQIYGSESEIGLFSGATLVNSISGSMFWSAPSTVGWGGGLQNKGLLRFTGPSSLEAAVDSEGMWVENAGAWPVLTNEEGANIIFEVDSDVQIDWLFWNEGGNVLV 1386
R V+PA GHFKLS+ R+ +NTSC+ YGAS+TA+++ L+ LDPI DLGG VVREGDG+S YN+GF Y I ASN++E+L +SV + VGSG+ GC RLSTLGYW++ NWD + +VT+P+DAGFV LT DTAI T +NGGAL+THD+TCLPGW+ APGGTS+SFG+ KCYR F + SWA AQSACA AV + G RGG+L GALVTVQGL+EN WV R+CRG+ DCWVGMTRSYR + DLEWA++E G+SRYRSWA REPS + GE+CVA + S + AA+QGEARWYD EC+ KP+VCQAFG+S PFSL+VSTEL + GGYI+GAG V SSTLAQ+ G E+G+ +GAT++NS GSM WSA GWGG L N G L F+G LEAA D EG +NAGAWP + NEEG ++FE S+V ++WL WNEGG+V+V
Sbjct: 22 RYVIPADEGHFKLSITRDGAGYNTSCLFYGASATAVAAALDALDPIDDLGGSTVVREGDGASPEYNYGFVYHIVASNSSENLVNSVDIDVVGSGVQHGCARLSTLGYWEDELNWDTGVVPSSTDEVTIPTDAGFVVLTADTAIDTLRVNGGALVTHDSTCLPGWTPAPGGTSSSFGSKKCYRFFDHASSWAAAQSACASAVSQLQPGPARGGSLRGALVTVQGLEENNWVARMCRGDSLERDCWVGMTRSYRGAGRIETGDDLEWAELENVAGESRYRSWATREPSDFENDEAGEHCVATQGSRKRAADQGEARWYDDECEAEKPFVCQAFGISTPFSLSVSTELEMAGGYIVGAGTVTSSTLAQVSGDNGEVGILNGATVLNS--GSMDWSAAEACGWGGSLHNTGTLTFSGTILLEAAEDGEGFLADNAGAWPAVVNEEGGEVVFEAGSEVDLEWLLWNEGGSVVV 487
BLAST of mRNA_H-elongata_contig20855.6012.1 vs. uniprot
Match: A0A6H5JX22_9PHAE (C-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX22_9PHAE) HSP 1 Score: 426 bits (1095), Expect = 1.170e-140 Identity = 211/344 (61.34%), Postives = 253/344 (73.55%), Query Frame = 1
Query: 370 QVTLPSDAGFVTLTEDTAISTFEMNGGALITHDTTCLPGWSSAPGGTSASFGTHKCYRVFRNPMSWAKAQSACAIAVGMKETG-TRGGALSGALVTVQGLQENQWVQRLCRGE----DCWVGMTRSYRNDKVNASVFDLEWADVEVAMGDSRYRSWARREPSVVLEHDKGENCVAIRSSGRIAAEQGEARWYDAECDRMKPYVCQAFGVSQPFSLTVSTELNLTGGYIIGAGRVISSTLAQIYGSESEIGLFSGATLVNSISGSMFWSAPSTVGWGGGLQNKGLLRFTGPSSLEAAVDSEGMWVENAGAWPVLTNEEGANIIFEVDSDVQIDWLFWNEGGNVLV 1386
QVT+P+DAGFV LT DTAI T +NGGAL+THD+TCLPGW+ APGGTS+SFG+ KCYR F SW AQSACA AV + G +RGGAL GALVTVQGL EN WV R+CRG+ DCWVGMTRSYR + DLEWA++E G+ RYRSWA REPS + GENCVAI+ S + AA+QGEARWYD C+ KP+VCQAFG+S PFSL+VSTEL + GGYI+GAG V SSTLA++ G E+G+ +GATL+NS GSM WSA GWGG L N G L F+G LEAA D EG +NAGAWP + N+EGA ++FE S+V ++WL WNEGG+VLV
Sbjct: 16 QVTIPTDAGFVVLTADTAIDTLRINGGALVTHDSTCLPGWTPAPGGTSSSFGSKKCYRFFDRASSWPAAQSACARAVSQLQAGLSRGGALRGALVTVQGLGENNWVARMCRGDSQERDCWVGMTRSYRGAGRIETGDDLEWAELENVAGELRYRSWATREPSDFENDEAGENCVAIQGSRKRAADQGEARWYDDGCEAEKPFVCQAFGISTPFSLSVSTELEMAGGYIVGAGTVTSSTLAKVSGDNGEVGILNGATLLNS--GSMDWSAAEACGWGGSLHNTGTLTFSGAILLEAAEDGEGFLSDNAGAWPAVVNDEGAEVVFEAGSEVDLEWLLWNEGGSVLV 357
BLAST of mRNA_H-elongata_contig20855.6012.1 vs. uniprot
Match: A0A7S3HNV4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNV4_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.740e-25 Identity = 86/277 (31.05%), Postives = 127/277 (45.85%), Query Frame = 1
Query: 292 CTRLSTLGYWDEANNWDVDAGSAQIFQVTLPSDAGFVTLTEDTAISTFEMNGGALITHDTTCLPGWSSAPGGTSASFGTHKCYRVFRNPMSWAKAQSACAIAVGMKETGTRGGALSGALVTVQGLQENQWVQRLCRG--------EDCWVGMTRSYRNDKVNASVFDLEWA-----------DVEVAMGDSRYRSWARREP-----SVVLEHDKGENCVAIR--SSGRIAAEQGEARWYDAECDRMKPYVCQAFGVSQPFSLTVSTELNLTGGYIIG 1044
C T+G WD+ WD + +VT+P DAG + L++D ++++ M GG ++ +DT C GWS PG +S KCY++ P+ + +A+ C G+ G+ S LV ++ E VQR+CRG + CW+G+ N S D W D++V M + W R EP S LE GE C A+ + EQG W D C+ KP+VCQ FG + ++LTV LT G + G
Sbjct: 210 CAPFRTIGQWDDPYRWDTQQVPTSLTEVTIPVDAGVIKLSQDVSVASLTMLGGHILGYDTYCPFGWSVEPGDSSGI----KCYQLHEKPVPFNEAERTCNAVKGL-------GSESRHLVHIRDRAELLVVQRMCRGLTGYAAHSKGCWIGLWDQ------NGSG-DFRWISPVAIGTPTDPDLDVGM----FLDWRRDEPNNHTISEGLETPGGERCAALVPWQEDPLLLEQGS--WNDDSCNVAKPFVCQIFGNTARYTLTVHGHTTLTSGRLEG 462 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20855.6012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20855.6012.1 >prot_H-elongata_contig20855.6012.1 ID=prot_H-elongata_contig20855.6012.1|Name=mRNA_H-elongata_contig20855.6012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=462bp REVLPAASGHFKLSVVRNDVSFNTSCISYGASSTAISSVLEDLDPIGDLGback to top mRNA from alignment at H-elongata_contig20855:737..2849+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20855.6012.1 ID=mRNA_H-elongata_contig20855.6012.1|Name=mRNA_H-elongata_contig20855.6012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2113bp|location=Sequence derived from alignment at H-elongata_contig20855:737..2849+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20855:737..2849+ >mRNA_H-elongata_contig20855.6012.1 ID=mRNA_H-elongata_contig20855.6012.1|Name=mRNA_H-elongata_contig20855.6012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2772bp|location=Sequence derived from alignment at H-elongata_contig20855:737..2849+ (Himanthalia elongata Himel1 dioecious)back to top |