mRNA_H-elongata_contig208536.6011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208536.6011.1
Unique NamemRNA_H-elongata_contig208536.6011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: D7FUE9_ECTSI (Alkylglycerone-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.220e-21
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1
Query:   22 KAGGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDFR 183
            KA GAFSRT VGLDLASAMLGSEGCLGIITSVVVKV PLP+VSEHAS+LFRDF+
Sbjct: 2176 KAPGAFSRTSVGLDLASAMLGSEGCLGIITSVVVKVVPLPQVSEHASFLFRDFK 2229          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A6H5KHQ5_9PHAE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.090e-21
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   19 RKAGGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDFR 183
            R A GAFSRT VGLDLASAMLGSEGCLGIITSVVVKV PLP+VSEHAS+LFRDF+
Sbjct: 1764 RWAPGAFSRTSVGLDLASAMLGSEGCLGIITSVVVKVVPLPQVSEHASFLFRDFK 1818          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A534QD86_9DELT (Alkylglycerone-phosphate synthase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534QD86_9DELT)

HSP 1 Score: 63.5 bits (153), Expect = 2.870e-10
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   31 GAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDF 180
            GA  R  VG D A  +LGSEG LGI+TS VVKVHPLPE+S+H S +FR+F
Sbjct:  279 GAPPRESVGGDPARWLLGSEGRLGIVTSAVVKVHPLPELSKHGSVIFREF 328          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A164HPK7_9CRUS (Alkylglycerone-phosphate synthase n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164HPK7_9CRUS)

HSP 1 Score: 57.0 bits (136), Expect = 4.360e-9
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 IFPEFSRKAGGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDF 180
            + P    ++ G + R   G D+   M+GSEG LG+IT V +K+ P+P + ++AS++F DF
Sbjct:   19 VTPSGEWRSSGTYPRVSTGPDMNHVMIGSEGTLGVITEVTIKIRPIPPLRKYASFVFPDF 78          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A2V8K107_9BACT (Alkylglycerone-phosphate synthase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8K107_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 8.940e-9
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   34 AFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDF 180
            A  R  VGLDL   M GSEG LG+ITS VVK+ PLPEV E+ S LF  F
Sbjct:  284 ASPRESVGLDLRRLMFGSEGTLGVITSAVVKIFPLPEVQEYGSVLFPTF 332          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A7S4VSF5_9DINO (Alkylglycerone-phosphate synthase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VSF5_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-8
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   16 SRKAGGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDF 180
            S+ +  A  R+   L+L    LGSEGCLG++TS VV+V PLPEV+E+ S  F D+
Sbjct: 1569 SKTSSTALGRSSTNLELTGLALGSEGCLGVVTSAVVRVRPLPEVTEYQSVAFPDW 1623          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A7Y3PKK4_9ACTN (FAD-binding oxidoreductase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y3PKK4_9ACTN)

HSP 1 Score: 58.5 bits (140), Expect = 1.660e-8
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   28 GGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDFR 183
            GG   R+ VG DL +  +GSEG LG+ITSVV+KVHPLP   + A+Y F  F+
Sbjct:  216 GGLAPRSAVGPDLTAIFVGSEGTLGVITSVVLKVHPLPNYEKRAAYGFPTFQ 267          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: E0QT79_9ACTO (FAD linked oxidase, C-terminal domain protein n=13 Tax=Mobiluncus mulieris TaxID=2052 RepID=E0QT79_9ACTO)

HSP 1 Score: 58.5 bits (140), Expect = 1.670e-8
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 IFPEFSRKAGGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDFR 183
            + P+   + GG    +  G DL    LGSEG LG+IT V V++HP+PEV  + ++ FRDF+
Sbjct:  231 VTPQGIMEIGGPAPASATGPDLRQLFLGSEGTLGVITRVRVRIHPIPEVKRYEAFSFRDFK 291          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A812KV89_9DINO (Ads-1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812KV89_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 1.700e-8
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    7 PEFSRKAGGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLFRDF 180
            P    ++  A  R    + L S +LGSEGCLGIITS VV+V PLPEV E+ S +F D+
Sbjct: 1760 PRVPAQSQTAIGRASTNIGLPSLVLGSEGCLGIITSAVVRVRPLPEVVEYQSIVFPDW 1817          
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Match: A0A7S1WVF7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WVF7_ALECA)

HSP 1 Score: 55.8 bits (133), Expect = 1.880e-8
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   31 GAFSRTLVG-----LDLASAMLGSEGCLGIITSVVVKVHPLPEVSEHASYLF 171
            G+ SRT +G     L+L   +LGSEGCLG++TS VV+V PLPE +E+ S +F
Sbjct:    2 GSSSRTALGRSSTNLELTGLVLGSEGCLGVVTSAVVRVRPLPEATEYESVVF 53          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208536.6011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE9_ECTSI1.220e-2188.89Alkylglycerone-phosphate synthase n=1 Tax=Ectocarp... [more]
A0A6H5KHQ5_9PHAE3.090e-2187.27FAD-binding PCMH-type domain-containing protein n=... [more]
A0A534QD86_9DELT2.870e-1064.00Alkylglycerone-phosphate synthase n=1 Tax=Deltapro... [more]
A0A164HPK7_9CRUS4.360e-938.33Alkylglycerone-phosphate synthase n=1 Tax=Daphnia ... [more]
A0A2V8K107_9BACT8.940e-961.22Alkylglycerone-phosphate synthase n=2 Tax=Acidobac... [more]
A0A7S4VSF5_9DINO1.240e-849.09Alkylglycerone-phosphate synthase n=1 Tax=Alexandr... [more]
A0A7Y3PKK4_9ACTN1.660e-853.85FAD-binding oxidoreductase n=1 Tax=Acidimicrobiale... [more]
E0QT79_9ACTO1.670e-842.62FAD linked oxidase, C-terminal domain protein n=13... [more]
A0A812KV89_9DINO1.700e-850.00Ads-1 protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A7S1WVF7_ALECA1.880e-851.92Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208536contigH-elongata_contig208536:251..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue3.1e-18
Seed eggNOG ortholog2880.D7FUE9
Preferred nameAGPS
KEGG rclassRC00004,RC00020,RC02886
KEGG koko:K00803,ko:K13356
KEGG ReactionR04311,R09470
KEGG Pathwayko00073,ko00565,ko01100,ko04146,ko04212,map00073,map00565,map01100,map04146,map04212
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006605,GO:0006625,GO:0006629,GO:0006662,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008609,GO:0008610,GO:0008611,GO:0009058,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016740,GO:0016765,GO:0018904,GO:0031090,GO:0031903,GO:0031907,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042579,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046485,GO:0046504,GO:0046907,GO:0048037,GO:0050660,GO:0050662,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071949,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097384,GO:0098588,GO:0098805,GO:1901265,GO:1901363,GO:1901503,GO:1901576
EggNOG free text desc.alkylglycerone-phosphate synthase activity
EggNOG OGsCOG0277@1,COG3320@1,KOG1221@2759,KOG1233@2759
EC1.2.1.84,2.5.1.26
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.0300279-CDS-H-elongata_contig208536:250..4331622930166.0300279-CDS-H-elongata_contig208536:250..433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208536 251..433 +
1691679305.5811744-CDS-H-elongata_contig208536:250..4331691679305.5811744-CDS-H-elongata_contig208536:250..433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208536 251..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208536.6011.1prot_H-elongata_contig208536.6011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208536 251..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208536.6011.1

>prot_H-elongata_contig208536.6011.1 ID=prot_H-elongata_contig208536.6011.1|Name=mRNA_H-elongata_contig208536.6011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
IFPEFSRKAGGAFSRTLVGLDLASAMLGSEGCLGIITSVVVKVHPLPEVS
EHASYLFRDFR
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mRNA from alignment at H-elongata_contig208536:251..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208536.6011.1 ID=mRNA_H-elongata_contig208536.6011.1|Name=mRNA_H-elongata_contig208536.6011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig208536:251..433+ (Himanthalia elongata Himel1 dioecious)
ATTTTCCCGGAATTTTCCCGGAAGGCGGGAGGGGCGTTCTCTCGCACCTT GGTGGGGCTAGACCTTGCGTCGGCCATGCTCGGGAGCGAGGGCTGCCTGG GCATCATTACCAGCGTGGTCGTGAAGGTGCATCCGCTTCCGGAGGTTTCA GAGCACGCGTCTTACCTCTTCAGAGACTTCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig208536:251..433+

>mRNA_H-elongata_contig208536.6011.1 ID=mRNA_H-elongata_contig208536.6011.1|Name=mRNA_H-elongata_contig208536.6011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig208536:251..433+ (Himanthalia elongata Himel1 dioecious)
ATTTTCCCGGAATTTTCCCGGAAGGCGGGAGGGGCGTTCTCTCGCACCTT
GGTGGGGCTAGACCTTGCGTCGGCCATGCTCGGGAGCGAGGGCTGCCTGG
GCATCATTACCAGCGTGGTCGTGAAGGTGCATCCGCTTCCGGAGGTTTCA
GAGCACGCGTCTTACCTCTTCAGAGACTTCCGGATTTTCCCGGAATTTTC
CCGGAAGGCGGGAGGGGCGTTCTCTCGCACCTTGGTGGGGCTAGACCTTG
CGTCGGCCATGCTCGGGAGCGAGGGCTGCCTGGGCATCATTACCAGCGTG
GTCGTGAAGGTGCATCCGCTTCCGGAGGTTTCAGAGCACGCGTCTTACCT
CTTCAGAGACTTCCGG
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