mRNA_H-elongata_contig208528.6010.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208528.6010.1
Unique NamemRNA_H-elongata_contig208528.6010.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.340e-27
Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L + + EV   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A +++L ++NT+F TPK G      +    KE HR  +D+IL+RQ DRRLV N +V       SDH LV  ++R   R APNRR
Sbjct:  115 KDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRR 258
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.350e-27
Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L + + EV   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A +++L ++NT+F TPK G      +    KE HR  +D+IL+RQ DRRLV N +V       SDH LV  ++R   R APNRR
Sbjct:  227 KDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRR 370
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.380e-27
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L + + EV   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A +++L + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V N++V       SDH LV  ++RL  R APNRR
Sbjct:  218 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 361
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5JHC1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.220e-27
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L   + +V   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A +++L + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V N++V       SDH LV  ++RL  R APNRR
Sbjct:   36 KDSFWTALDEAIRQVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLAPRVAPNRR 179
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5JD26_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD26_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.510e-27
Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 435
            +  FW  L + + EV   DHLV++MD NARTG R +G    + +++G Y RD +N+NG RLL  A +++L + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V NI+V       SDH LV  ++RLL R APNR
Sbjct:   36 RDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCEAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNNGKE--KYRLDFILIRQTDRRFVRNISVKRVNFKDSDHNLVLTTVRLLPRVAPNR 178
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.900e-27
Identity = 66/148 (44.59%), Postives = 89/148 (60.14%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L   + EV   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A  ++L + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V N++V       SDH LV  ++RL  R APNRR
Sbjct:  115 KDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 258
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.040e-27
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L + + EV   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A +++L + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V +++V       SDH LV  ++RL  R APNRR
Sbjct:  115 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKE--KYRLDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 258
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5K358_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K358_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.050e-27
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L + + EV   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A +++L + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V N++V       SDH LV  ++RL  R APNRR
Sbjct:  210 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 353
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5LPI5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPI5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.110e-27
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L + + EV   DHLV++MD NARTG R +G    D +++G Y RD +N+NG RLL  A +++L + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V N++V       SDH LV  ++RL  R APNRR
Sbjct:  194 KDSFWTALDAVIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDLMNNNGERLLGLASDNQLSLTNTYFRTPKCGVQHTFQSSNKGKE--KYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVPTTVRLPPRVAPNRR 337
[Close]
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.440e-27
Identity = 66/148 (44.59%), Postives = 88/148 (59.46%), Query Frame = 1 
Query:    1 KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYSRDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRWRMDYILVRQHDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNRR 438
            K  FW  L + + EV   DHLV++MD NARTG R    G  D +VLG Y RD +N+NG RL   A +++  + NT+F TPK G      +    KE  ++R+D+IL+RQ DRR V N++V       SDH LV  ++RL  R APNRR
Sbjct:  115 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKE--KYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRR 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208528.6010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC90_9PHAE1.340e-2745.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE1.350e-2745.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KV75_9PHAE2.380e-2744.59Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JHC1_9PHAE4.220e-2743.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JD26_9PHAE4.510e-2744.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K259_9PHAE4.900e-2744.59Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KSV0_9PHAE5.040e-2743.92Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K358_9PHAE5.050e-2744.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LPI5_9PHAE5.110e-2744.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE5.440e-2744.59Endo/exonuclease/phosphatase domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208528contigH-elongata_contig208528:612..1049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.2
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog6500.XP_005107471.1
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930165.995283-CDS-H-elongata_contig208528:611..10491622930165.995283-CDS-H-elongata_contig208528:611..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208528 612..1049 -
1691679305.5681093-CDS-H-elongata_contig208528:611..10491691679305.5681093-CDS-H-elongata_contig208528:611..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208528 612..1049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208528.6010.1prot_H-elongata_contig208528.6010.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208528 612..1049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208528.6010.1

>prot_H-elongata_contig208528.6010.1 ID=prot_H-elongata_contig208528.6010.1|Name=mRNA_H-elongata_contig208528.6010.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
KSKFWKELRSTVAEVPVSDHLVLMMDGNARTGGRGEGSGLGDVRVLGPYS
RDTLNDNGSRLLACAVEHKLLIVNTFFSTPKRGGNSDALTYEGPKESHRW
RMDYILVRQHDRRLVWNITVHPKMKSDHRLVSASIRLLGRNAPNRR
back to top

mRNA from alignment at H-elongata_contig208528:612..1049-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208528.6010.1 ID=mRNA_H-elongata_contig208528.6010.1|Name=mRNA_H-elongata_contig208528.6010.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig208528:612..1049- (Himanthalia elongata Himel1 dioecious)
AAATCTAAGTTCTGGAAGGAACTTCGCAGCACTGTCGCTGAGGTACCTGT
CAGCGACCACCTGGTTTTGATGATGGATGGTAACGCACGTACGGGAGGAA
GGGGAGAGGGAAGTGGACTAGGGGATGTCCGGGTTTTGGGACCATACAGC
AGAGACACCCTCAATGACAACGGGTCGCGACTTCTAGCATGTGCTGTCGA
GCACAAGCTGTTGATTGTCAACACTTTTTTCAGCACGCCGAAGCGTGGGG
GAAACTCGGATGCGTTAACATACGAGGGGCCGAAGGAATCCCACCGCTGG
CGCATGGACTACATCCTGGTACGCCAGCATGACCGCAGGCTTGTCTGGAA
TATTACTGTCCACCCGAAGATGAAATCAGACCACCGCTTGGTTTCAGCTT
CCATCCGCCTCCTAGGACGGAACGCACCCAACCGCCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig208528:612..1049-

>mRNA_H-elongata_contig208528.6010.1 ID=mRNA_H-elongata_contig208528.6010.1|Name=mRNA_H-elongata_contig208528.6010.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig208528:612..1049- (Himanthalia elongata Himel1 dioecious)
AAATCTAAGTTCTGGAAGGAACTTCGCAGCACTGTCGCTGAGGTACCTGT
CAGCGACCACCTGGTTTTGATGATGGATGGTAACGCACGTACGGGAGGAA
GGGGAGAGGGAAGTGGACTAGGGGATGTCCGGGTTTTGGGACCATACAGC
AGAGACACCCTCAATGACAACGGGTCGCGACTTCTAGCATGTGCTGTCGA
GCACAAGCTGTTGATTGTCAACACTTTTTTCAGCACGCCGAAGCGTGGGG
GAAACTCGGATGCGTTAACATACGAGGGGCCGAAGGAATCCCACCGCTGG
CGCATGGACTACATCCTGGTACGCCAGCATGACCGCAGGCTTGTCTGGAA
TATTACTGTCCACCCGAAGATGAAATCAGACCACCGCTTGGTTTCAGCTT
CCATCCGCCTCCTAGGACGGAACGCACCCAACCGCCGCAAATCTAAGTTC
TGGAAGGAACTTCGCAGCACTGTCGCTGAGGTACCTGTCAGCGACCACCT
GGTTTTGATGATGGATGGTAACGCACGTACGGGAGGAAGGGGAGAGGGAA
GTGGACTAGGGGATGTCCGGGTTTTGGGACCATACAGCAGAGACACCCTC
AATGACAACGGGTCGCGACTTCTAGCATGTGCTGTCGAGCACAAGCTGTT
GATTGTCAACACTTTTTTCAGCACGCCGAAGCGTGGGGGAAACTCGGATG
CGTTAACATACGAGGGGCCGAAGGAATCCCACCGCTGGCGCATGGACTAC
ATCCTGGTACGCCAGCATGACCGCAGGCTTGTCTGGAATATTACTGTCCA
CCCGAAGATGAAATCAGACCACCGCTTGGTTTCAGCTTCCATCCGCCTCC
TAGGACGGAACGCACCCAACCGCCGC
back to top