mRNA_H-elongata_contig208461.6009.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208461.6009.1
Unique NamemRNA_H-elongata_contig208461.6009.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: D7FU15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU15_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.460e-16
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            R    +QNP S   SV E+L AI+RKGGV  LWHGTSAGVMKTVPKYCVAV++K
Sbjct:  119 RASITIQNPDSKFSSVRESLAAIYRKGGVGALWHGTSAGVMKTVPKYCVAVSVK 172          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S2MG35_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG35_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.460e-13
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            R    +QNP+S   SV+ AL  I+R  GV+GLWHGTSAGVMKTVPKYC A+ +K
Sbjct:    1 RATITIQNPSSVQPSVSSALKDIYRTKGVKGLWHGTSAGVMKTVPKYCTAIVVK 54          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S3PVJ4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVJ4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.370e-12
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            R    LQNP+S M ++ E+L  I+R  G++GLWHGT+AG++KTVPKYC A+ +K
Sbjct:  169 RASITLQNPSSEMKNIRESLKYIYRNFGIKGLWHGTNAGILKTVPKYCTAIIVK 222          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A482V1I0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1I0_9ARCH)

HSP 1 Score: 63.9 bits (154), Expect = 3.070e-12
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            R    +Q+P S + SV+ ALV I++  GV GLWHG SAG++KTVPKY  AVA+K
Sbjct:    5 RATITIQDPKSELSSVSAALVHIYKTRGVAGLWHGVSAGILKTVPKYITAVAVK 58          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S2KGR1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGR1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.680e-12
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   25 LQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            LQNP S++ ++  ++  IHRK G+ GLWHGTSAG++KTVPKYC AV +K
Sbjct:   88 LQNPQSDLPNIRSSMREIHRKYGLGGLWHGTSAGILKTVPKYCTAVYIK 136          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A835YRL8_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.560e-12
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            R    LQNP     +V +AL  +++  G+ GLWHGTSAGVMKTVPKYCVAVA+K
Sbjct:  126 RASITLQNPQCEHSTVPQALRHLYKTRGLSGLWHGTSAGVMKTVPKYCVAVAVK 179          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S1ZAZ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAZ4_TRICV)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            R    LQNP S++ +V  AL  I+R  G+ GLWHGTSAGV+KTVPKYC AV +K
Sbjct:  133 RATITLQNPESDLLNVRSALRQIYRAHGLSGLWHGTSAGVLKTVPKYCTAVVVK 186          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S0CD34_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD34_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.850e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   25 LQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            LQNP S + ++ E+L  I++  G+ GLWHGTSAG++K+VPKYC AV +K
Sbjct:  175 LQNPQSELRNIRESLRTIYKTNGISGLWHGTSAGILKSVPKYCTAVLVK 223          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S2SAS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SAS7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.310e-10
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            R    LQNP S++ ++  +L  I+   G++GLWHGTSAG++KTVPKYC A+ +K
Sbjct:   78 RSSITLQNPESDIPNIRASLRKIYDTHGIKGLWHGTSAGILKTVPKYCTAIVVK 131          
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S0KAL9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAL9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   25 LQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
            LQNP+S++ ++  +L  I+ K G+ GLWHGTSAG++KTVPKYC AV +K
Sbjct:  133 LQNPSSDLPNIRASLRFIYEKHGLGGLWHGTSAGILKTVPKYCTAVFVK 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU15_ECTSI5.460e-1668.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2MG35_9STRA1.460e-1361.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3PVJ4_9STRA2.370e-1253.70Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A482V1I0_9ARCH3.070e-1255.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2KGR1_9STRA8.680e-1259.18Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A835YRL8_9STRA9.560e-1259.26Mitochondrial carrier domain-containing protein n=... [more]
A0A7S1ZAZ4_TRICV1.830e-1159.26Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0CD34_9STRA4.850e-1155.10Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2SAS7_9STRA1.310e-1050.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S0KAL9_9STRA1.790e-1057.14Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208461contigH-elongata_contig208461:85..255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue8.2e-13
Seed eggNOG ortholog2880.D7FU15
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs2C9EI@1,2RYD4@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930165.9345078-CDS-H-elongata_contig208461:84..2551622930165.9345078-CDS-H-elongata_contig208461:84..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208461 85..255 +
1691679305.5536814-CDS-H-elongata_contig208461:84..2551691679305.5536814-CDS-H-elongata_contig208461:84..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208461 85..255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208461.6009.1prot_H-elongata_contig208461.6009.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208461 85..255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208461.6009.1

>prot_H-elongata_contig208461.6009.1 ID=prot_H-elongata_contig208461.6009.1|Name=mRNA_H-elongata_contig208461.6009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
PPPRVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKY
CVAVAMK
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mRNA from alignment at H-elongata_contig208461:85..255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208461.6009.1 ID=mRNA_H-elongata_contig208461.6009.1|Name=mRNA_H-elongata_contig208461.6009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig208461:85..255+ (Himanthalia elongata Himel1 dioecious)
CCTCCGCCCCGTGTCAAAACACGCCTCCAGAATCCGACCTCGAACATGGG GTCGGTAACTGAAGCCCTGGTTGCCATACATCGTAAGGGCGGGGTGCGGG GTTTGTGGCATGGTACAAGCGCCGGCGTCATGAAGACGGTCCCCAAGTAC TGCGTGGCCGTTGCGATGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig208461:85..255+

>mRNA_H-elongata_contig208461.6009.1 ID=mRNA_H-elongata_contig208461.6009.1|Name=mRNA_H-elongata_contig208461.6009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig208461:85..255+ (Himanthalia elongata Himel1 dioecious)
CCTCCGCCCCGTGTCAAAACACGCCTCCAGAATCCGACCTCGAACATGGG
GTCGGTAACTGAAGCCCTGGTTGCCATACATCGTAAGGGCGGGGTGCGGG
GTTTGTGGCATGGTACAAGCGCCGGCGTCATGAAGACGGTCCCCAAGTAC
TGCGTGGCCGTTGCGATGAAGCCTCCGCCCCGTGTCAAAACACGCCTCCA
GAATCCGACCTCGAACATGGGGTCGGTAACTGAAGCCCTGGTTGCCATAC
ATCGTAAGGGCGGGGTGCGGGGTTTGTGGCATGGTACAAGCGCCGGCGTC
ATGAAGACGGTCCCCAAGTACTGCGTGGCCGTTGCGATGAAG
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