mRNA_H-elongata_contig208461.6009.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: D7FU15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU15_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 5.460e-16 Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
R +QNP S SV E+L AI+RKGGV LWHGTSAGVMKTVPKYCVAV++K
Sbjct: 119 RASITIQNPDSKFSSVRESLAAIYRKGGVGALWHGTSAGVMKTVPKYCVAVSVK 172
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S2MG35_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG35_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.460e-13 Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
R +QNP+S SV+ AL I+R GV+GLWHGTSAGVMKTVPKYC A+ +K
Sbjct: 1 RATITIQNPSSVQPSVSSALKDIYRTKGVKGLWHGTSAGVMKTVPKYCTAIVVK 54
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S3PVJ4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVJ4_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.370e-12 Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
R LQNP+S M ++ E+L I+R G++GLWHGT+AG++KTVPKYC A+ +K
Sbjct: 169 RASITLQNPSSEMKNIRESLKYIYRNFGIKGLWHGTNAGILKTVPKYCTAIIVK 222
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A482V1I0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1I0_9ARCH) HSP 1 Score: 63.9 bits (154), Expect = 3.070e-12 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
R +Q+P S + SV+ ALV I++ GV GLWHG SAG++KTVPKY AVA+K
Sbjct: 5 RATITIQDPKSELSSVSAALVHIYKTRGVAGLWHGVSAGILKTVPKYITAVAVK 58
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S2KGR1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGR1_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 8.680e-12 Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1
Query: 25 LQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
LQNP S++ ++ ++ IHRK G+ GLWHGTSAG++KTVPKYC AV +K
Sbjct: 88 LQNPQSDLPNIRSSMREIHRKYGLGGLWHGTSAGILKTVPKYCTAVYIK 136
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A835YRL8_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL8_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 9.560e-12 Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
R LQNP +V +AL +++ G+ GLWHGTSAGVMKTVPKYCVAVA+K
Sbjct: 126 RASITLQNPQCEHSTVPQALRHLYKTRGLSGLWHGTSAGVMKTVPKYCVAVAVK 179
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S1ZAZ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAZ4_TRICV) HSP 1 Score: 66.2 bits (160), Expect = 1.830e-11 Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
R LQNP S++ +V AL I+R G+ GLWHGTSAGV+KTVPKYC AV +K
Sbjct: 133 RATITLQNPESDLLNVRSALRQIYRAHGLSGLWHGTSAGVLKTVPKYCTAVVVK 186
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S0CD34_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD34_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 4.850e-11 Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 25 LQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
LQNP S + ++ E+L I++ G+ GLWHGTSAG++K+VPKYC AV +K
Sbjct: 175 LQNPQSELRNIRESLRTIYKTNGISGLWHGTSAGILKSVPKYCTAVLVK 223
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S2SAS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SAS7_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.310e-10 Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 10 RVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
R LQNP S++ ++ +L I+ G++GLWHGTSAG++KTVPKYC A+ +K
Sbjct: 78 RSSITLQNPESDIPNIRASLRKIYDTHGIKGLWHGTSAGILKTVPKYCTAIVVK 131
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Match: A0A7S0KAL9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAL9_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10 Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1
Query: 25 LQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYCVAVAMK 171
LQNP+S++ ++ +L I+ K G+ GLWHGTSAG++KTVPKYC AV +K
Sbjct: 133 LQNPSSDLPNIRASLRFIYEKHGLGGLWHGTSAGILKTVPKYCTAVFVK 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208461.6009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig208461.6009.1 >prot_H-elongata_contig208461.6009.1 ID=prot_H-elongata_contig208461.6009.1|Name=mRNA_H-elongata_contig208461.6009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp PPPRVKTRLQNPTSNMGSVTEALVAIHRKGGVRGLWHGTSAGVMKTVPKYback to top mRNA from alignment at H-elongata_contig208461:85..255+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig208461.6009.1 ID=mRNA_H-elongata_contig208461.6009.1|Name=mRNA_H-elongata_contig208461.6009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig208461:85..255+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig208461:85..255+ >mRNA_H-elongata_contig208461.6009.1 ID=mRNA_H-elongata_contig208461.6009.1|Name=mRNA_H-elongata_contig208461.6009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig208461:85..255+ (Himanthalia elongata Himel1 dioecious)back to top |