mRNA_H-elongata_contig20843.6008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20843.6008.1
Unique NamemRNA_H-elongata_contig20843.6008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20843.6008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20843contigH-elongata_contig20843:2102..2598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-26_001270.1
Exons1
Model size499
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930165.8940225-CDS-H-elongata_contig20843:2101..25961622930165.8940225-CDS-H-elongata_contig20843:2101..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20843 2102..2596 +
1691679305.5361245-CDS-H-elongata_contig20843:2101..25961691679305.5361245-CDS-H-elongata_contig20843:2101..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20843 2102..2596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20843.6008.1prot_H-elongata_contig20843.6008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20843 2102..2596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20843.6008.1

>prot_H-elongata_contig20843.6008.1 ID=prot_H-elongata_contig20843.6008.1|Name=mRNA_H-elongata_contig20843.6008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
RCPRATPPPISSFTDSLVEEEAETQDDEDTADGDNFILPAKKPLSKRPGR
KVSRVKRTRGTETNVAKDGRPTVPAPPGDETGGSTVAPDAALETVAGAQR
HPLELDDSDQEEGTGGNGGILSAREGSDEEEQDDDDGELAGETPSLLGRG
WSAKDRRRAEERKQR
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mRNA from alignment at H-elongata_contig20843:2102..2598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20843.6008.1 ID=mRNA_H-elongata_contig20843.6008.1|Name=mRNA_H-elongata_contig20843.6008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig20843:2102..2598+ (Himanthalia elongata Himel1 dioecious)
CGATGTCCTAGGGCTACCCCACCCCCCATCTCCAGCTTCACAGACTCGCT
GGTCGAGGAGGAAGCGGAGACGCAGGATGACGAAGATACAGCGGATGGGG
ATAATTTCATCCTCCCGGCAAAAAAACCCTTGAGCAAGCGACCTGGTCGA
AAAGTCAGTAGGGTAAAGCGGACTCGCGGCACGGAGACGAATGTTGCTAA
GGACGGCAGGCCCACCGTGCCCGCGCCTCCAGGGGACGAAACTGGCGGTT
CCACAGTGGCTCCCGACGCCGCGCTCGAGACCGTCGCAGGAGCCCAGCGG
CACCCGTTAGAGCTCGACGACAGCGACCAGGAAGAAGGAACTGGAGGTAA
TGGTGGCATTCTGAGCGCGAGGGAAGGATCCGACGAAGAGGAGCAGGACG
ATGACGACGGCGAGCTGGCGGGCGAGACTCCGTCTCTGCTCGGAAGGGGG
TGGAGCGCGAAAGACCGCAGGCGTGCCGAGGAACGCAAGCAGCGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig20843:2102..2598+

>mRNA_H-elongata_contig20843.6008.1 ID=mRNA_H-elongata_contig20843.6008.1|Name=mRNA_H-elongata_contig20843.6008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig20843:2102..2598+ (Himanthalia elongata Himel1 dioecious)
CGATGTCCTAGGGCTACCCCACCCCCCATCTCCAGCTTCACAGACTCGCT
GGTCGAGGAGGAAGCGGAGACGCAGGATGACGAAGATACAGCGGATGGGG
ATAATTTCATCCTCCCGGCAAAAAAACCCTTGAGCAAGCGACCTGGTCGA
AAAGTCAGTAGGGTAAAGCGGACTCGCGGCACGGAGACGAATGTTGCTAA
GGACGGCAGGCCCACCGTGCCCGCGCCTCCAGGGGACGAAACTGGCGGTT
CCACAGTGGCTCCCGACGCCGCGCTCGAGACCGTCGCAGGAGCCCAGCGG
CACCCGTTAGAGCTCGACGACAGCGACCAGGAAGAAGGAACTGGAGGTAA
TGGTGGCATTCTGAGCGCGAGGGAAGGATCCGACGAAGAGGAGCAGGACG
ATGACGACGGCGAGCTGGCGGGCGAGACTCCGTCTCTGCTCGGAAGGGGG
TGGAGCGCGAAAGACCGCAGGCGTGCCGAGGAACGCAAGCAGCGGCGATG
TCCTAGGGCTACCCCACCCCCCATCTCCAGCTTCACAGACTCGCTGGTCG
AGGAGGAAGCGGAGACGCAGGATGACGAAGATACAGCGGATGGGGATAAT
TTCATCCTCCCGGCAAAAAAACCCTTGAGCAAGCGACCTGGTCGAAAAGT
CAGTAGGGTAAAGCGGACTCGCGGCACGGAGACGAATGTTGCTAAGGACG
GCAGGCCCACCGTGCCCGCGCCTCCAGGGGACGAAACTGGCGGTTCCACA
GTGGCTCCCGACGCCGCGCTCGAGACCGTCGCAGGAGCCCAGCGGCACCC
GTTAGAGCTCGACGACAGCGACCAGGAAGAAGGAACTGGAGGTAATGGTG
GCATTCTGAGCGCGAGGGAAGGATCCGACGAAGAGGAGCAGGACGATGAC
GACGGCGAGCTGGCGGGCGAGACTCCGTCTCTGCTCGGAAGGGGGTGGAG
CGCGAAAGACCGCAGGCGTGCCGAGGAACGCAAGCAGCGG
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