mRNA_H-elongata_contig208412.6007.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208412.6007.1
Unique NamemRNA_H-elongata_contig208412.6007.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A0F8D181_LARCR (Zinc finger BED domain-containing protein 4 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8D181_LARCR)

HSP 1 Score: 53.1 bits (126), Expect = 6.020e-6
Identity = 30/91 (32.97%), Postives = 47/91 (51.65%), Query Frame = 1
Query:   28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
            IP +  TRWNS L Q K +L+     L A+   +   +     +T ++W     +V +LEPFAEA  + QG+  +T S +     +L+ HL
Sbjct:  103 IPASVVTRWNSTLRQLKAVLKCDATKLTAILQESGHKETT---FTSREWSQIQELVRVLEPFAEATDLTQGEKLVTISAVVPCVLSLNHHL 190          
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A673CRU7_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673CRU7_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 1.510e-5
Identity = 30/91 (32.97%), Postives = 47/91 (51.65%), Query Frame = 1
Query:   28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
            IP +  TRWNS L Q K +L+     L A+   +   +     +T ++W     +V +LEPFAEA  + QG+  +T S +     +L+ HL
Sbjct:  316 IPSSVVTRWNSTLRQLKAVLKCDATKLTAILQESGHKET---AFTLREWSQIQELVRVLEPFAEATDLTQGEKVVTISAVVPCVLSLNHHL 403          
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: UPI001C03A597 (zinc finger BED domain-containing protein 4-like isoform X1 n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03A597)

HSP 1 Score: 51.2 bits (121), Expect = 2.860e-5
Identity = 29/91 (31.87%), Postives = 47/91 (51.65%), Query Frame = 1
Query:   28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
            IP +  TRWNS L Q K +L+     L A+   +   +     +T ++W     +V +LEPFA+A  + QG+  +T S +     +L+ HL
Sbjct:  353 IPSSVVTRWNSTLRQLKAVLKCDSTKLTAILQESGHKET---AFTSREWSQIQELVRVLEPFAQATDLTQGEKVVTISAVVPCVLSLNHHL 440          
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A6P6NIE5_CARAU (zinc finger BED domain-containing protein 4-like n=2 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6NIE5_CARAU)

HSP 1 Score: 50.8 bits (120), Expect = 3.900e-5
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   22 KAIPLACATRWNSHLTQAKVILENKLQVL--LALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFIT-NSMMPMLCDALDVHL 300
            + IP A  TRWNS L Q K +L    Q L  +A +T +S      + ++ ++W     + ++L+PFAEA  + QG+  +T +S++P +  +L+ HL
Sbjct:  334 RGIPAAVNTRWNSTLRQVKAVLSFSHQELCSVAQDTGHS-----ELVFSIREWNLMKELCDVLQPFAEATDLTQGEKIVTVSSVLPCVL-SLNHHL 423          
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A4U5UD49_COLLU (Zinc finger BED domain-containing protein 4 n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5UD49_COLLU)

HSP 1 Score: 50.8 bits (120), Expect = 3.910e-5
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 1
Query:   28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
            IP +  TRWNS L Q K +L+       A+   +   +     +T ++W     +V +LEPFAEA  + QG+  +T S +     +L+ HL
Sbjct:  227 IPASVVTRWNSTLRQLKAVLKCDATKRTAILQESGHKETT---FTSREWSQIQELVRVLEPFAEATDLTQGEKLVTISAVVPCVLSLNHHL 314          
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: UPI00094F0CEC (uncharacterized protein LOC109524433 n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094F0CEC)

HSP 1 Score: 50.4 bits (119), Expect = 4.040e-5
Identity = 30/95 (31.58%), Postives = 47/95 (49.47%), Query Frame = 1
Query:    1 ESRNGKTKAIPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMM-PMLCD 282
            E R G  + IP A +TRW+S   Q K +         A+       +   +  T+++W   A +  +LEPFA+A T+ QGD   T +M+ P + D
Sbjct:  143 EERFGVDRTIPAANSTRWSSVFLQLKALQNLPGIDCRAIAEICEPVEFNNLVLTRQEWAQLAELTTILEPFADATTLTQGDQTATITMVVPAILD 237          
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: UPI00201438CA (zinc finger BED domain-containing protein 4-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI00201438CA)

HSP 1 Score: 50.1 bits (118), Expect = 6.260e-5
Identity = 31/96 (32.29%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   22 KAIPLACATRWNSHLTQAKVILENKLQVLLAL--ETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFIT-NSMMPMLCDALDVHL 300
            + IP A  TRWNS L Q K +L    Q L ++  +T +S      + ++ ++W     + ++L+PFAEA  + QG+  +T +S++P +  +L+ HL
Sbjct:  104 RGIPAAVNTRWNSTLRQVKAVLSFSHQELCSVVQDTGHS-----ELVFSIREWNLMKELCDVLQPFAEATDLTQGEKIVTVSSVLPCVL-SLNHHL 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A0F8D181_LARCR6.020e-632.97Zinc finger BED domain-containing protein 4 n=1 Ta... [more]
A0A673CRU7_9TELE1.510e-532.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Sp... [more]
UPI001C03A5972.860e-531.87zinc finger BED domain-containing protein 4-like i... [more]
A0A6P6NIE5_CARAU3.900e-533.33zinc finger BED domain-containing protein 4-like n... [more]
A0A4U5UD49_COLLU3.910e-531.87Zinc finger BED domain-containing protein 4 n=1 Ta... [more]
UPI00094F0CEC4.040e-531.58uncharacterized protein LOC109524433 n=1 Tax=Hippo... [more]
UPI00201438CA6.260e-532.29zinc finger BED domain-containing protein 4-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208412contigH-elongata_contig208412:646..945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue6.9e-07
Seed eggNOG ortholog8128.ENSONIP00000008417
EggNOG free text desc.Conserved hypothetical protein
EggNOG OGs39UGI@33154,3BNFC@33208,3DFE3@33213,48J0R@7711,49G7Q@7742,4A752@7898,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930165.8563673-CDS-H-elongata_contig208412:645..9451622930165.8563673-CDS-H-elongata_contig208412:645..945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208412 646..945 -
1691679305.5247445-CDS-H-elongata_contig208412:645..9451691679305.5247445-CDS-H-elongata_contig208412:645..945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208412 646..945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208412.6007.1prot_H-elongata_contig208412.6007.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208412 646..945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208412.6007.1

>prot_H-elongata_contig208412.6007.1 ID=prot_H-elongata_contig208412.6007.1|Name=mRNA_H-elongata_contig208412.6007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
ESRNGKTKAIPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPR
ICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL
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mRNA from alignment at H-elongata_contig208412:646..945-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208412.6007.1 ID=mRNA_H-elongata_contig208412.6007.1|Name=mRNA_H-elongata_contig208412.6007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig208412:646..945- (Himanthalia elongata Himel1 dioecious)
GAAAGTCGCAACGGGAAAACTAAGGCGATTCCGCTAGCTTGCGCTACACG ATGGAACTCTCACCTGACCCAGGCGAAGGTGATTCTGGAGAACAAATTGC AGGTGCTGCTAGCGCTTGAGACTGCAAACAGCGCCCCGAAGGGACCACGA ATTTGCTACACAAAGAAAGACTGGATTAACACAGCCGCCATTGTAGAGCT CCTGGAGCCGTTTGCCGAAGCTGTAACCGTCTTGCAGGGTGACTCCTTCA TCACCAACAGCATGATGCCCATGCTGTGTGACGCACTAGATGTGCACTTG
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Coding sequence (CDS) from alignment at H-elongata_contig208412:646..945-

>mRNA_H-elongata_contig208412.6007.1 ID=mRNA_H-elongata_contig208412.6007.1|Name=mRNA_H-elongata_contig208412.6007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig208412:646..945- (Himanthalia elongata Himel1 dioecious)
GAAAGTCGCAACGGGAAAACTAAGGCGATTCCGCTAGCTTGCGCTACACG
ATGGAACTCTCACCTGACCCAGGCGAAGGTGATTCTGGAGAACAAATTGC
AGGTGCTGCTAGCGCTTGAGACTGCAAACAGCGCCCCGAAGGGACCACGA
ATTTGCTACACAAAGAAAGACTGGATTAACACAGCCGCCATTGTAGAGCT
CCTGGAGCCGTTTGCCGAAGCTGTAACCGTCTTGCAGGGTGACTCCTTCA
TCACCAACAGCATGATGCCCATGCTGTGTGACGCACTAGATGTGCACTTG
GAAAGTCGCAACGGGAAAACTAAGGCGATTCCGCTAGCTTGCGCTACACG
ATGGAACTCTCACCTGACCCAGGCGAAGGTGATTCTGGAGAACAAATTGC
AGGTGCTGCTAGCGCTTGAGACTGCAAACAGCGCCCCGAAGGGACCACGA
ATTTGCTACACAAAGAAAGACTGGATTAACACAGCCGCCATTGTAGAGCT
CCTGGAGCCGTTTGCCGAAGCTGTAACCGTCTTGCAGGGTGACTCCTTCA
TCACCAACAGCATGATGCCCATGCTGTGTGACGCACTAGATGTGCACTTG
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