mRNA_H-elongata_contig208412.6007.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A0F8D181_LARCR (Zinc finger BED domain-containing protein 4 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8D181_LARCR) HSP 1 Score: 53.1 bits (126), Expect = 6.020e-6 Identity = 30/91 (32.97%), Postives = 47/91 (51.65%), Query Frame = 1
Query: 28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
IP + TRWNS L Q K +L+ L A+ + + +T ++W +V +LEPFAEA + QG+ +T S + +L+ HL
Sbjct: 103 IPASVVTRWNSTLRQLKAVLKCDATKLTAILQESGHKETT---FTSREWSQIQELVRVLEPFAEATDLTQGEKLVTISAVVPCVLSLNHHL 190
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A673CRU7_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673CRU7_9TELE) HSP 1 Score: 52.0 bits (123), Expect = 1.510e-5 Identity = 30/91 (32.97%), Postives = 47/91 (51.65%), Query Frame = 1
Query: 28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
IP + TRWNS L Q K +L+ L A+ + + +T ++W +V +LEPFAEA + QG+ +T S + +L+ HL
Sbjct: 316 IPSSVVTRWNSTLRQLKAVLKCDATKLTAILQESGHKET---AFTLREWSQIQELVRVLEPFAEATDLTQGEKVVTISAVVPCVLSLNHHL 403
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: UPI001C03A597 (zinc finger BED domain-containing protein 4-like isoform X1 n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03A597) HSP 1 Score: 51.2 bits (121), Expect = 2.860e-5 Identity = 29/91 (31.87%), Postives = 47/91 (51.65%), Query Frame = 1
Query: 28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
IP + TRWNS L Q K +L+ L A+ + + +T ++W +V +LEPFA+A + QG+ +T S + +L+ HL
Sbjct: 353 IPSSVVTRWNSTLRQLKAVLKCDSTKLTAILQESGHKET---AFTSREWSQIQELVRVLEPFAQATDLTQGEKVVTISAVVPCVLSLNHHL 440
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A6P6NIE5_CARAU (zinc finger BED domain-containing protein 4-like n=2 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6NIE5_CARAU) HSP 1 Score: 50.8 bits (120), Expect = 3.900e-5 Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 22 KAIPLACATRWNSHLTQAKVILENKLQVL--LALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFIT-NSMMPMLCDALDVHL 300
+ IP A TRWNS L Q K +L Q L +A +T +S + ++ ++W + ++L+PFAEA + QG+ +T +S++P + +L+ HL
Sbjct: 334 RGIPAAVNTRWNSTLRQVKAVLSFSHQELCSVAQDTGHS-----ELVFSIREWNLMKELCDVLQPFAEATDLTQGEKIVTVSSVLPCVL-SLNHHL 423
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: A0A4U5UD49_COLLU (Zinc finger BED domain-containing protein 4 n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5UD49_COLLU) HSP 1 Score: 50.8 bits (120), Expect = 3.910e-5 Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 1
Query: 28 IPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHL 300
IP + TRWNS L Q K +L+ A+ + + +T ++W +V +LEPFAEA + QG+ +T S + +L+ HL
Sbjct: 227 IPASVVTRWNSTLRQLKAVLKCDATKRTAILQESGHKETT---FTSREWSQIQELVRVLEPFAEATDLTQGEKLVTISAVVPCVLSLNHHL 314
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: UPI00094F0CEC (uncharacterized protein LOC109524433 n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094F0CEC) HSP 1 Score: 50.4 bits (119), Expect = 4.040e-5 Identity = 30/95 (31.58%), Postives = 47/95 (49.47%), Query Frame = 1
Query: 1 ESRNGKTKAIPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMM-PMLCD 282
E R G + IP A +TRW+S Q K + A+ + + T+++W A + +LEPFA+A T+ QGD T +M+ P + D
Sbjct: 143 EERFGVDRTIPAANSTRWSSVFLQLKALQNLPGIDCRAIAEICEPVEFNNLVLTRQEWAQLAELTTILEPFADATTLTQGDQTATITMVVPAILD 237
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Match: UPI00201438CA (zinc finger BED domain-containing protein 4-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI00201438CA) HSP 1 Score: 50.1 bits (118), Expect = 6.260e-5 Identity = 31/96 (32.29%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 22 KAIPLACATRWNSHLTQAKVILENKLQVLLAL--ETANSAPKGPRICYTKKDWINTAAIVELLEPFAEAVTVLQGDSFIT-NSMMPMLCDALDVHL 300
+ IP A TRWNS L Q K +L Q L ++ +T +S + ++ ++W + ++L+PFAEA + QG+ +T +S++P + +L+ HL
Sbjct: 104 RGIPAAVNTRWNSTLRQVKAVLSFSHQELCSVVQDTGHS-----ELVFSIREWNLMKELCDVLQPFAEATDLTQGEKIVTVSSVLPCVL-SLNHHL 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208412.6007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig208412.6007.1 >prot_H-elongata_contig208412.6007.1 ID=prot_H-elongata_contig208412.6007.1|Name=mRNA_H-elongata_contig208412.6007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp ESRNGKTKAIPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRback to top mRNA from alignment at H-elongata_contig208412:646..945- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig208412.6007.1 ID=mRNA_H-elongata_contig208412.6007.1|Name=mRNA_H-elongata_contig208412.6007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig208412:646..945- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig208412:646..945- >mRNA_H-elongata_contig208412.6007.1 ID=mRNA_H-elongata_contig208412.6007.1|Name=mRNA_H-elongata_contig208412.6007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig208412:646..945- (Himanthalia elongata Himel1 dioecious)back to top |