mRNA_H-elongata_contig208371.6006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208371.6006.1
Unique NamemRNA_H-elongata_contig208371.6006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.330e-26
Identity = 67/174 (38.51%), Postives = 97/174 (55.75%), Query Frame = 1 
Query:    4 VCFLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            +CFL++KSDA +A R  +    A  G+   ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL   G SC  +G
Sbjct:  280 ICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRP-TKLLPKGESCFYVG 450
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.190e-26
Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FLKHKSDA  A R  +    A +G+   ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL   G SC  +G
Sbjct:  761 FLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.210e-26
Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FLKHKSDA  A R  +    A +G+   ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL   G SC  +G
Sbjct:  468 FLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.520e-25
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FL++KSDA +A R  +    A  G+   ++++ +D GG++ G  F    +EL IK+E TP Y+PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL   G SC  +G
Sbjct:  129 FLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.290e-25
Identity = 66/172 (38.37%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FL++KSDA +A R  +    A  G+   ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL   G SC  +G
Sbjct:   15 FLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRP-TKLLPKGESCFYVG 183
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.250e-24
Identity = 66/172 (38.37%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FL++KSDA +A R  +    A  G+   ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL   G SC  +G
Sbjct:  227 FLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRP-TKLLPKGESCFYVG 395
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.390e-24
Identity = 64/172 (37.21%), Postives = 93/172 (54.07%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FLK K DA +A R  +    A +G+   ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+    +A       L   V + K+DRLWAEAM +AC+  N    S+      PYE+W+G   +     PF    Y R  +P  KL   G +C  +G
Sbjct:   15 FLKSKPDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE-ASHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVG 183
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.710e-24
Identity = 65/171 (38.01%), Postives = 92/171 (53.80%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK-IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FLK++SDA  A R  +    A      ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL   G SC  +G
Sbjct:  349 FLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRP-TKLLPKGESCFYVG 517
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.890e-24
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = 1 
Query:   10 FLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            FLK KSDA +A R  +    A +G+   ++++ +D GGE+ G +F    +EL IK+E TP Y+PQ+NGV +R LGL+    +A       L   V + K+DRLWAEAM +AC+  N    S+      PYE+W+G   +     PF    Y R  +P  KL   G +C  +G
Sbjct:  667 FLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE-ASHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVG 835
[Close]
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.230e-24
Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1 
Query:    4 VCFLKHKSDATNALRDIINDYFAPEGLK--IDVIHTDGGGEWHG-QFLFFLSELGIKRESTPPYTPQHNGVVDRALGLLHDKTVA-------LLRGVMVGKSDRLWAEAMVYACDMWNRCTSSSFDSGTLPYELWYGR-HPAFDNITPFGTVGYLRRSKPGRKLSSHGASCIVLG 495
            + FL++KSDA +A R  +    A +G+   ++ + +D GGE+ G +F    +EL IK+E TP ++PQ+NGV +R LGL+ +  +A       L   V + K+D+LWAEAM +AC+  N    S+      PYE+WYG   PA     PF    Y +  +P  KL   G SC  +G
Sbjct:  363 IYFLRNKSDAASAFRSFLASVRA-DGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPA--RPYPFLKPAYCKWQRPS-KLFPKGESCFYVG 533
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208371.6006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL9_9PHAE2.330e-2638.51Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBA7_9PHAE3.190e-2639.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.210e-2639.53Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVR5_9PHAE1.520e-2537.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE9.290e-2538.37Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE1.250e-2438.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE1.390e-2437.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE4.710e-2438.01Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2M6_9PHAE5.890e-2437.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE6.230e-2437.14Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208371contigH-elongata_contig208371:45..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score93.6
Seed ortholog evalue9.3e-17
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930165.8021998-CDS-H-elongata_contig208371:44..5391622930165.8021998-CDS-H-elongata_contig208371:44..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208371 45..539 +
1691679305.5140977-CDS-H-elongata_contig208371:44..5391691679305.5140977-CDS-H-elongata_contig208371:44..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208371 45..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208371.6006.1prot_H-elongata_contig208371.6006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208371 45..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208371.6006.1

>prot_H-elongata_contig208371.6006.1 ID=prot_H-elongata_contig208371.6006.1|Name=mRNA_H-elongata_contig208371.6006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MVCFLKHKSDATNALRDIINDYFAPEGLKIDVIHTDGGGEWHGQFLFFLS
ELGIKRESTPPYTPQHNGVVDRALGLLHDKTVALLRGVMVGKSDRLWAEA
MVYACDMWNRCTSSSFDSGTLPYELWYGRHPAFDNITPFGTVGYLRRSKP
GRKLSSHGASCIVLG
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mRNA from alignment at H-elongata_contig208371:45..539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208371.6006.1 ID=mRNA_H-elongata_contig208371.6006.1|Name=mRNA_H-elongata_contig208371.6006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig208371:45..539+ (Himanthalia elongata Himel1 dioecious)
ATGGTCTGTTTTCTCAAGCACAAGAGCGACGCCACGAATGCGTTAAGGGA
CATAATCAACGACTACTTCGCGCCCGAGGGCCTCAAGATCGACGTCATCC
ACACGGACGGTGGGGGAGAATGGCACGGCCAGTTCCTATTTTTCCTGAGT
GAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAACACAA
TGGCGTCGTGGACCGCGCTCTGGGGCTACTGCACGACAAGACCGTGGCCC
TGCTGCGAGGTGTAATGGTGGGTAAGAGCGACCGTCTATGGGCGGAAGCT
ATGGTGTATGCATGCGATATGTGGAACCGATGCACCTCCTCCTCCTTCGA
CAGCGGCACCTTGCCATATGAGCTTTGGTACGGCCGACATCCGGCATTCG
ACAACATCACCCCGTTCGGGACCGTGGGATATCTACGACGGTCGAAGCCG
GGGCGCAAACTATCCTCCCACGGGGCGAGCTGCATCGTGCTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig208371:45..539+

>mRNA_H-elongata_contig208371.6006.1 ID=mRNA_H-elongata_contig208371.6006.1|Name=mRNA_H-elongata_contig208371.6006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig208371:45..539+ (Himanthalia elongata Himel1 dioecious)
ATGGTCTGTTTTCTCAAGCACAAGAGCGACGCCACGAATGCGTTAAGGGA
CATAATCAACGACTACTTCGCGCCCGAGGGCCTCAAGATCGACGTCATCC
ACACGGACGGTGGGGGAGAATGGCACGGCCAGTTCCTATTTTTCCTGAGT
GAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAACACAA
TGGCGTCGTGGACCGCGCTCTGGGGCTACTGCACGACAAGACCGTGGCCC
TGCTGCGAGGTGTAATGGTGGGTAAGAGCGACCGTCTATGGGCGGAAGCT
ATGGTGTATGCATGCGATATGTGGAACCGATGCACCTCCTCCTCCTTCGA
CAGCGGCACCTTGCCATATGAGCTTTGGTACGGCCGACATCCGGCATTCG
ACAACATCACCCCGTTCGGGACCGTGGGATATCTACGACGGTCGAAGCCG
GGGCGCAAACTATCCTCCCACGGGGCGAGCTGCATCGTGCTCGGGATGGT
CTGTTTTCTCAAGCACAAGAGCGACGCCACGAATGCGTTAAGGGACATAA
TCAACGACTACTTCGCGCCCGAGGGCCTCAAGATCGACGTCATCCACACG
GACGGTGGGGGAGAATGGCACGGCCAGTTCCTATTTTTCCTGAGTGAGCT
CGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAACACAATGGCG
TCGTGGACCGCGCTCTGGGGCTACTGCACGACAAGACCGTGGCCCTGCTG
CGAGGTGTAATGGTGGGTAAGAGCGACCGTCTATGGGCGGAAGCTATGGT
GTATGCATGCGATATGTGGAACCGATGCACCTCCTCCTCCTTCGACAGCG
GCACCTTGCCATATGAGCTTTGGTACGGCCGACATCCGGCATTCGACAAC
ATCACCCCGTTCGGGACCGTGGGATATCTACGACGGTCGAAGCCGGGGCG
CAAACTATCCTCCCACGGGGCGAGCTGCATCGTGCTCGGG
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