mRNA_H-elongata_contig208368.6005.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 149 bits (376), Expect = 3.420e-38 Identity = 72/167 (43.11%), Postives = 110/167 (65.87%), Query Frame = 1
Query: 70 DWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
+WRKA E E+ V+++V RP+++ ++G+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y E ++P + SIR+LLA A D E+ D + AFL +++EE+Y+++P ++ AV RL KA+YGL + R W K +++ +GF + +AD CVF
Sbjct: 1009 EWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVF 1175
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 145 bits (365), Expect = 9.820e-37 Identity = 73/190 (38.42%), Postives = 119/190 (62.63%), Query Frame = 1
Query: 7 VTLDIQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEY--RKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
+T DI EP N + +W++A + E +++N ++ V+ PK K VVG+K ++K K ++G V++YK RLVAQG+ Q EGV Y+E +SP +IR LLA AK+ E+ D + AFL +++EE+Y+ P+ Y ++ P V +L K+IYGL + RCWNN + + + G++Q ++DPC++
Sbjct: 803 ITADINEPINMDEAFSGEHSAEWKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLY 992
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE) HSP 1 Score: 139 bits (350), Expect = 7.940e-35 Identity = 69/186 (37.10%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 13 LDIQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
L+++EP+N R+ + S +W KA + E+ + +N + P K + TK +YK K+ DG ++K+K RLV QGF Q G+ Y + +SP +++R LL+ A+K+ +L FD AFL ++EE+YI+ PE + V +LN+++YGL + RCWN +F + + IGF+Q AD C+F
Sbjct: 237 LNLEEPKNYREAINSENKVNWEKAMQSEIDSLHENKTWTLANLPDGKKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCWNQRFAAFLLKIGFKQSNADTCLF 422
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 139 bits (349), Expect = 1.380e-34 Identity = 73/190 (38.42%), Postives = 118/190 (62.11%), Query Frame = 1
Query: 7 VTLDIQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEY--RKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
+T DI EP N + +W++A + E +++N ++ V+ PK K VVG+K ++K K ++G V++YK RLVAQG+ Q EGV Y+E +SP +IR LLA AK+ E+ D + AFL ++ EE+Y+ P+ Y ++ P V +L K+IYGL + RCWNN + + + G++Q ++DPC++
Sbjct: 716 ITADINEPINMDEAFSGEHSAEWKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNL-EEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLY 904
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 138 bits (348), Expect = 1.970e-34 Identity = 75/191 (39.27%), Postives = 112/191 (58.64%), Query Frame = 1
Query: 22 QEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEYRKFPGAVGR--------LNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
QEPR+ + M+SP+W W+KA E EMR + D+ Y V P+N VVG+K +++ K +GK+E YK RLVAQGF Q+ G+ + + ++P ASIR++LA A D ++ D + A+L AD++EE++++ P PG R L AIYGL + GR W K C+ + +G + D CVF
Sbjct: 958 QEPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQP------PGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVF 1142
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 137 bits (346), Expect = 3.620e-34 Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = 1
Query: 7 VTLDIQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEYR--KFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
+T DI EPRN + + W+KA + E +++N ++ V P +K +VG++ ++K K DG VEK+K RLVAQG+ Q EG+ Y E +SP SIR LLA D E+ D AFL D+ +E+Y++ PE YR + P V +L K++YGL + RCWN+ S + + G++Q AD C++
Sbjct: 826 LTADINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLY 1015
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 134 bits (338), Expect = 4.050e-33 Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 1
Query: 1 MHVTLDIQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAA-IGFEQGKADPCVF 570
+H T + EPR + +PEW +W++A + E+ + Y P + +G + +Y+ K DG++ +YK RLVAQGF Q G+ Y E ++P T S+R+LLA A ++ EL FD A+L AD+DEE+Y+ P Y + + RL KA+YGL + G WN+ + A +GF++ +DPCV+
Sbjct: 6 LHGTETVHEPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVY 196
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 133 bits (334), Expect = 1.320e-32 Identity = 70/184 (38.04%), Postives = 111/184 (60.33%), Query Frame = 1
Query: 19 IQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
+ +P++ + M P+ + W+ A E+ V +Y +V RP+++ VVG K +++ K G DG++EKYK R+VA+GF QVEGV YT+ ++P ASIR LLA A D E+ D + AFL ++DEE+++ P ++ V +L KA+YGL + R W K ++ ++GF + AD VF
Sbjct: 279 LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVF 462
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY) HSP 1 Score: 131 bits (330), Expect = 5.070e-32 Identity = 67/181 (37.02%), Postives = 104/181 (57.46%), Query Frame = 1
Query: 28 PRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
P ++ M P+ W+ AE E+ V ++ +V +PK + +V K +Y K G DG+V KYK RLVA+GF Q+EGV Y E ++P SIR LLA A + E+ D + AFL D++EE+Y++ P ++ G V +LNK++YGL + R W + C++ +GF + D +F
Sbjct: 969 PLTHKEAMARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASREWYKRVCAEFKTMGFTRSDHDHAIF 1149
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO) HSP 1 Score: 131 bits (330), Expect = 5.070e-32 Identity = 68/187 (36.36%), Postives = 110/187 (58.82%), Query Frame = 1
Query: 16 DIQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATPAAKDGELRHFDAEQAFLTADIDEELYIEIPE--EYRKFPGAVGRLNKAIYGLVKVGRCWNNKFCSDVAAIGFEQGKADPCVF 570
D+++P NR E + W A E + N VY+ V P + +GTK + K+K+ DG ++KYK RLV QGF Q GV Y + ++P +++R++ A AAK+ E+ H D + AFL D++E++Y++ P ++ PG V +LNK++YGL + CWN K + A+G++ K +PC+F
Sbjct: 894 DLKDPNNR----EDKRF--WFDAAYSEFAAIDGNHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLF 1074 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208368.6005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig208368.6005.1 >prot_H-elongata_contig208368.6005.1 ID=prot_H-elongata_contig208368.6005.1|Name=mRNA_H-elongata_contig208368.6005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp MHVTLDIQEPRNRRQVMESPEWDDWRKAEEIEMRGMVDNCVYKQVARPKNback to top mRNA from alignment at H-elongata_contig208368:190..759- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig208368.6005.1 ID=mRNA_H-elongata_contig208368.6005.1|Name=mRNA_H-elongata_contig208368.6005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig208368:190..759- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig208368:190..759- >mRNA_H-elongata_contig208368.6005.1 ID=mRNA_H-elongata_contig208368.6005.1|Name=mRNA_H-elongata_contig208368.6005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig208368:190..759- (Himanthalia elongata Himel1 dioecious)back to top |