mRNA_H-elongata_contig208363.6004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208363.6004.1
Unique NamemRNA_H-elongata_contig208363.6004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208363.6004.1 vs. uniprot
Match: D8LM75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM75_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.260e-6
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  130 EVYTSARDAESAQERMRTIRVERKHAGARVAVRWLLRQNAQRKLETWSQWTVVTAEYRRAEEIEAWRARAS 342
            E +  A     AQ  +   +V+R+ AGAR+A+ WL R+  + +L  W QW   TAE R AEE EAWR RA+
Sbjct:  782 EAWGGALGGAVAQAHLLAAQVDRRSAGARLALLWLHRRRQRTQLAAWRQWARATAEDRDAEEREAWRGRAA 852
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BLAST of mRNA_H-elongata_contig208363.6004.1 vs. uniprot
Match: A0A6H5KQH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.820e-5
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  190 VERKHAGARVAVRWLLRQNAQRKLETWSQWTVVTAEYRRAEEIEAWRARAS 342
            V+R+ AGAR+A+ WL R+  + +L  W QW    AE R AEE EAWRARA+
Sbjct:    9 VDRRGAGARLALLWLHRRRQRTQLAAWRQWARAMAEDRDAEEREAWRARAA 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208363.6004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM75_ECTSI2.260e-643.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQH8_9PHAE6.820e-552.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208363contigH-elongata_contig208363:77..654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005810.1
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.9335856-CDS-H-elongata_contig208363:76..2531622930164.9335856-CDS-H-elongata_contig208363:76..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208363 77..253 -
1691679305.481705-CDS-H-elongata_contig208363:76..2531691679305.481705-CDS-H-elongata_contig208363:76..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208363 77..253 -
1622930164.9456184-CDS-H-elongata_contig208363:486..6541622930164.9456184-CDS-H-elongata_contig208363:486..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208363 487..654 -
1691679305.4904652-CDS-H-elongata_contig208363:486..6541691679305.4904652-CDS-H-elongata_contig208363:486..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208363 487..654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208363.6004.1prot_H-elongata_contig208363.6004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208363 77..654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208363.6004.1

>prot_H-elongata_contig208363.6004.1 ID=prot_H-elongata_contig208363.6004.1|Name=mRNA_H-elongata_contig208363.6004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
AAAAASGRLKQERETQRRQARLLASAEFRTSRRLLTRTWVAWKEVYTSAR
DAESAQERMRTIRVERKHAGARVAVRWLLRQNAQRKLETWSQWTVVTAEY
RRAEEIEAWRARASI
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mRNA from alignment at H-elongata_contig208363:77..654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208363.6004.1 ID=mRNA_H-elongata_contig208363.6004.1|Name=mRNA_H-elongata_contig208363.6004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=578bp|location=Sequence derived from alignment at H-elongata_contig208363:77..654- (Himanthalia elongata Himel1 dioecious)
GCGGCTGCTGCAGCCTCCGGGCGACTTAAGCAAGAGCGAGAGACGCAAAG
GCGGCAAGCTCGACTCCTTGCATCGGCGGAGTTCAGGACATCGCGCCGAC
TGCTAACCAGAACGTGGGTAGCGTGGAAAGAAGTCTACACGTCTGCAAGG
GATGCGGAGTCTGCACAGGTGATGTTCTCGTACGAAACGCGTTTGCATCA
GGCCATGTGTTGAAGATAACCTTTCGTGCAAAAATGTAAATCGGACGATA
TTTCCTCCAGAATAGGACGAGTGTCAAAGTAAACGTGACGGTTTCGAGGC
GGCTCTCCTTATGTGCCCGTGTATATAAAGTTATCAATCGAAAACGACAA
GAGCAACTAATTAACATATTTTTGCATCTCCCGCCGAATTGTTTCGCCCA
GGAGAGAATGCGGACAATAAGGGTTGAACGTAAACACGCCGGTGCTCGTG
TAGCCGTTCGTTGGCTCCTCAGACAAAACGCCCAACGAAAGTTGGAAACG
TGGTCGCAATGGACAGTTGTTACGGCAGAATATAGAAGGGCGGAAGAGAT
TGAGGCGTGGCGCGCACGTGCGTCGATA
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Coding sequence (CDS) from alignment at H-elongata_contig208363:77..654-

>mRNA_H-elongata_contig208363.6004.1 ID=mRNA_H-elongata_contig208363.6004.1|Name=mRNA_H-elongata_contig208363.6004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig208363:77..654- (Himanthalia elongata Himel1 dioecious)
GCGGCTGCTGCAGCCTCCGGGCGACTTAAGCAAGAGCGAGAGACGCAAAG
GCGGCAAGCTCGACTCCTTGCATCGGCGGAGTTCAGGACATCGCGCCGAC
TGCTAACCAGAACGTGGGTAGCGTGGAAAGAAGTCTACACGTCTGCAAGG
GATGCGGAGTCTGCACAGGCGGCTGCTGCAGCCTCCGGGCGACTTAAGCA
AGAGCGAGAGACGCAAAGGCGGCAAGCTCGACTCCTTGCATCGGCGGAGT
TCAGGACATCGCGCCGACTGCTAACCAGAACGTGGGTAGCGTGGAAAGAA
GTCTACACGTCTGCAAGGGATGCGGAGTCTGCACAGGAGAGAATGCGGAC
AATAAGGGTTGAACGTAAACACGCCGGTGCTCGTGTAGCCGTTCGTTGGC
TCCTCAGACAAAACGCCCAACGAAAGTTGGAAACGTGGTCGCAATGGACA
GTTGTTACGGCAGAATATAGAAGGGCGGAAGAGATTGAGGCGTGGCGCGC
ACGTGCGTCGATAGAGAGAATGCGGACAATAAGGGTTGAACGTAAACACG
CCGGTGCTCGTGTAGCCGTTCGTTGGCTCCTCAGACAAAACGCCCAACGA
AAGTTGGAAACGTGGTCGCAATGGACAGTTGTTACGGCAGAATATAGAAG
GGCGGAAGAGATTGAGGCGTGGCGCGCACGTGCGTCGATA
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