mRNA_H-elongata_contig20835.6003.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A6H5KQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM6_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.040e-32 Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1
Query: 1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSREEPGWIGHLLWTGMLIVMFTVLPANKWFGT 207
LS RRAFLEGYLLPHEY ACYGFAAC+ L VVMGLLLSRE GW+GHLLWTGML+V FT +PA KWFGT
Sbjct: 701 LSFRRAFLEGYLLPHEYRACYGFAACVALTVVMGLLLSREHQGWVGHLLWTGMLVVAFTFIPAAKWFGT 769
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.950e-32 Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1
Query: 1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSREEPGWIGHLLWTGMLIVMFTVLPANKWFGT 207
LS RRAFLEGYLLPHEY ACYGFAAC+ L VVMGLLLSRE GW+GHLLWTGML+V FT +PA KWFGT
Sbjct: 2480 LSFRRAFLEGYLLPHEYRACYGFAACVALTVVMGLLLSREHQGWMGHLLWTGMLVVAFTFIPAAKWFGT 2548
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A024GJ80_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJ80_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.260e-13 Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSR-EEPGWIGHLLWTGMLIVMFTVLPANKWF 201
+S+ +AFL GYLLP EY+ FAA + L+ + G++++ EEPGW+GHL+WTG + +F+ P K+F
Sbjct: 1232 VSMYKAFLSGYLLPKEYAILLCFAAHLLLLFIFGMVVTATEEPGWLGHLIWTGGITFIFSFFPIVKYF 1299
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: F0WE76_9STRA (Uncharacterized protein AlNc14C72G4932 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WE76_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.320e-11 Identity = 29/68 (42.65%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSR-EEPGWIGHLLWTGMLIVMFTVLPANKWF 201
LS+ +AF+ G+LLP EY+ F A + L+ + G++++ EEP W+GHL+WTG +I +F+ P K+F
Sbjct: 1247 LSVYQAFISGFLLPKEYAILICFTANLLLIFIFGMVVTATEEPVWLGHLIWTGGIIFVFSFFPIVKYF 1314
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A662WFS1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFS1_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 4.610e-11 Identity = 26/70 (37.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSR-EEPGWIGHLLWTGMLIVMFTVLPANKWFGT 207
++L +A+ +G+LLP ++ F A + L+++ G++L+ E+P W+GHL+WTG +++FT+ P K+F T
Sbjct: 1285 MTLYQAYRQGFLLPQDHVTLGSFLALLLLILLYGMVLTATEDPAWLGHLVWTGGYVLIFTLFPTLKYFKT 1354
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A485LHZ7_9STRA (Aste57867_21065 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHZ7_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 8.610e-11 Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLS-REEPGWIGHLLWTGMLIVMFTVLPANKWF 201
++L +AF GYLL +Y FA +F + + GLL S EEPGW+GH++WT +++F++ KWF
Sbjct: 1221 MTLYQAFRHGYLLHEDYLTLGCFAGLLFCLFLFGLLASFSEEPGWLGHMIWTSAYVLIFSIAAVFKWF 1288
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A6G0X9E6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9E6_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.110e-10 Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLS-REEPGWIGHLLWTGMLIVMFTVLPANKWFG 204
++L +AF +GYLL +Y F + + V GLL S E P WIGHL+W G ++++F+ P KW+
Sbjct: 1194 MTLYQAFRQGYLLQEDYLTLGCFGGLVGCLFVFGLLASLTEAPSWIGHLIWVGSIVLLFSAFPVLKWYN 1262 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20835.6003.1 >prot_H-elongata_contig20835.6003.1 ID=prot_H-elongata_contig20835.6003.1|Name=mRNA_H-elongata_contig20835.6003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSREEPGWIGHLLWback to top mRNA from alignment at H-elongata_contig20835:6042..6248+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20835.6003.1 ID=mRNA_H-elongata_contig20835.6003.1|Name=mRNA_H-elongata_contig20835.6003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig20835:6042..6248+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20835:6042..6248+ >mRNA_H-elongata_contig20835.6003.1 ID=mRNA_H-elongata_contig20835.6003.1|Name=mRNA_H-elongata_contig20835.6003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig20835:6042..6248+ (Himanthalia elongata Himel1 dioecious)back to top |