mRNA_H-elongata_contig20835.6003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20835.6003.1
Unique NamemRNA_H-elongata_contig20835.6003.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A6H5KQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM6_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.040e-32
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSREEPGWIGHLLWTGMLIVMFTVLPANKWFGT 207
            LS RRAFLEGYLLPHEY ACYGFAAC+ L VVMGLLLSRE  GW+GHLLWTGML+V FT +PA KWFGT
Sbjct:  701 LSFRRAFLEGYLLPHEYRACYGFAACVALTVVMGLLLSREHQGWVGHLLWTGMLVVAFTFIPAAKWFGT 769          
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.950e-32
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSREEPGWIGHLLWTGMLIVMFTVLPANKWFGT 207
            LS RRAFLEGYLLPHEY ACYGFAAC+ L VVMGLLLSRE  GW+GHLLWTGML+V FT +PA KWFGT
Sbjct: 2480 LSFRRAFLEGYLLPHEYRACYGFAACVALTVVMGLLLSREHQGWMGHLLWTGMLVVAFTFIPAAKWFGT 2548          
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A024GJ80_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJ80_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.260e-13
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSR-EEPGWIGHLLWTGMLIVMFTVLPANKWF 201
            +S+ +AFL GYLLP EY+    FAA + L+ + G++++  EEPGW+GHL+WTG +  +F+  P  K+F
Sbjct: 1232 VSMYKAFLSGYLLPKEYAILLCFAAHLLLLFIFGMVVTATEEPGWLGHLIWTGGITFIFSFFPIVKYF 1299          
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: F0WE76_9STRA (Uncharacterized protein AlNc14C72G4932 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WE76_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.320e-11
Identity = 29/68 (42.65%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSR-EEPGWIGHLLWTGMLIVMFTVLPANKWF 201
            LS+ +AF+ G+LLP EY+    F A + L+ + G++++  EEP W+GHL+WTG +I +F+  P  K+F
Sbjct: 1247 LSVYQAFISGFLLPKEYAILICFTANLLLIFIFGMVVTATEEPVWLGHLIWTGGIIFVFSFFPIVKYF 1314          
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A662WFS1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFS1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.610e-11
Identity = 26/70 (37.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSR-EEPGWIGHLLWTGMLIVMFTVLPANKWFGT 207
            ++L +A+ +G+LLP ++     F A + L+++ G++L+  E+P W+GHL+WTG  +++FT+ P  K+F T
Sbjct: 1285 MTLYQAYRQGFLLPQDHVTLGSFLALLLLILLYGMVLTATEDPAWLGHLVWTGGYVLIFTLFPTLKYFKT 1354          
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A485LHZ7_9STRA (Aste57867_21065 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHZ7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.610e-11
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLS-REEPGWIGHLLWTGMLIVMFTVLPANKWF 201
            ++L +AF  GYLL  +Y     FA  +F + + GLL S  EEPGW+GH++WT   +++F++    KWF
Sbjct: 1221 MTLYQAFRHGYLLHEDYLTLGCFAGLLFCLFLFGLLASFSEEPGWLGHMIWTSAYVLIFSIAAVFKWF 1288          
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Match: A0A6G0X9E6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9E6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.110e-10
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLS-REEPGWIGHLLWTGMLIVMFTVLPANKWFG 204
            ++L +AF +GYLL  +Y     F   +  + V GLL S  E P WIGHL+W G ++++F+  P  KW+ 
Sbjct: 1194 MTLYQAFRQGYLLQEDYLTLGCFGGLVGCLFVFGLLASLTEAPSWIGHLIWVGSIVLLFSAFPVLKWYN 1262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20835.6003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KQM6_9PHAE1.040e-3281.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ17_ECTSI1.950e-3281.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024GJ80_9STRA4.260e-1345.59Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WE76_9STRA1.320e-1142.65Uncharacterized protein AlNc14C72G4932 n=1 Tax=Alb... [more]
A0A662WFS1_9STRA4.610e-1137.14Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A485LHZ7_9STRA8.610e-1141.18Aste57867_21065 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X9E6_9STRA4.110e-1039.13Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20835contigH-elongata_contig20835:6042..6248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue7.1e-27
Seed eggNOG ortholog2880.D7FQ17
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Hectar predicted targeting categorysignal anchor
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.89382-CDS-H-elongata_contig20835:6041..62481622930164.89382-CDS-H-elongata_contig20835:6041..6248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20835 6042..6248 +
1691679305.4691143-CDS-H-elongata_contig20835:6041..62481691679305.4691143-CDS-H-elongata_contig20835:6041..6248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20835 6042..6248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20835.6003.1prot_H-elongata_contig20835.6003.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20835 6042..6248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20835.6003.1

>prot_H-elongata_contig20835.6003.1 ID=prot_H-elongata_contig20835.6003.1|Name=mRNA_H-elongata_contig20835.6003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
LSLRRAFLEGYLLPHEYSACYGFAACIFLVVVMGLLLSREEPGWIGHLLW
TGMLIVMFTVLPANKWFGT
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mRNA from alignment at H-elongata_contig20835:6042..6248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20835.6003.1 ID=mRNA_H-elongata_contig20835.6003.1|Name=mRNA_H-elongata_contig20835.6003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig20835:6042..6248+ (Himanthalia elongata Himel1 dioecious)
CTCTCCCTCCGACGAGCATTTCTCGAGGGCTACCTCTTACCGCACGAGTA TAGTGCGTGCTACGGCTTCGCCGCGTGCATTTTTCTAGTTGTGGTAATGG GACTGCTGCTCTCGAGAGAGGAACCGGGGTGGATAGGACATTTGCTCTGG ACTGGTATGCTCATAGTGATGTTCACGGTCCTGCCAGCAAATAAATGGTT TGGCACG
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Coding sequence (CDS) from alignment at H-elongata_contig20835:6042..6248+

>mRNA_H-elongata_contig20835.6003.1 ID=mRNA_H-elongata_contig20835.6003.1|Name=mRNA_H-elongata_contig20835.6003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig20835:6042..6248+ (Himanthalia elongata Himel1 dioecious)
CTCTCCCTCCGACGAGCATTTCTCGAGGGCTACCTCTTACCGCACGAGTA
TAGTGCGTGCTACGGCTTCGCCGCGTGCATTTTTCTAGTTGTGGTAATGG
GACTGCTGCTCTCGAGAGAGGAACCGGGGTGGATAGGACATTTGCTCTGG
ACTGGTATGCTCATAGTGATGTTCACGGTCCTGCCAGCAAATAAATGGTT
TGGCACGCTCTCCCTCCGACGAGCATTTCTCGAGGGCTACCTCTTACCGC
ACGAGTATAGTGCGTGCTACGGCTTCGCCGCGTGCATTTTTCTAGTTGTG
GTAATGGGACTGCTGCTCTCGAGAGAGGAACCGGGGTGGATAGGACATTT
GCTCTGGACTGGTATGCTCATAGTGATGTTCACGGTCCTGCCAGCAAATA
AATGGTTTGGCACG
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