mRNA_H-elongata_contig208302.6002.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: D7FU15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU15_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 1.370e-17 Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 1 VLQMTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
++ MTWARAFIFYGSD GKR+LE+ G +R+V V +PPL+ ST VQLINMPIIRA
Sbjct: 66 IIGMTWARAFIFYGSDRGKRKLEELGYSSRVVTVAVPPLVFSTVVQLINMPIIRA 120
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A835YRL8_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 9.600e-16 Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
MTWARAFIFYGSD GK LE RGV+++ + V LPPLL S+TVQL+N PIIRA
Sbjct: 76 MTWARAFIFYGSDWGKLYLERRGVESKTICVALPPLLCSSTVQLVNQPIIRA 127
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S1UGC6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGC6_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.530e-11 Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 1 VLQMTWARAFIFYGSDLGKRELEDRG-VKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
V MTWARA IF+GSDLG+++L++R V++ ++A LPPL+ ST VQ+ N PIIRA
Sbjct: 75 VFGMTWARAAIFFGSDLGRQQLKERRLVRSELLASALPPLVTSTVVQVCNQPIIRA 130
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S3ZNS9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS9_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.150e-10 Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 10 MTWARAFIFYGSDLGKRELEDRGV--KNRIVAVGLPPLLLSTTVQLINMPIIRA 165
MTWAR IFYGSD+G+R E+ V K + A+ +PPL++ST VQ++N PIIRA
Sbjct: 66 MTWARFAIFYGSDVGRRWFEESQVFEKGSVAAIAVPPLIVSTGVQVVNQPIIRA 119
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A1Z5JEI3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEI3_FISSO) HSP 1 Score: 62.0 bits (149), Expect = 5.860e-10 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 VLQMTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
VL MTWARA IF+GSD GK +L G+ V LPPL++ST VQ +NMP++RA
Sbjct: 65 VLGMTWARAGIFWGSDYGKEQLMQMGMAESAATV-LPPLVVSTVVQCVNMPLVRA 118
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S3PGJ4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PGJ4_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.450e-9 Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
MTWARA IFYGSD+G+++L+ + ++A LPPL LS+ VQ +NMP++RA
Sbjct: 78 MTWARAAIFYGSDIGRKKLKKHKF-HPVIATTLPPLFLSSFVQCVNMPLVRA 128
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: F2U662_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U662_SALR5) HSP 1 Score: 59.7 bits (143), Expect = 3.950e-9 Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIR 162
MTWARA IFYGSD G+ L+ GV + ++ LPPL +ST VQ++NMP+IR
Sbjct: 66 MTWARAAIFYGSDKGRHLLQAAGVGHS-ASIALPPLAISTCVQVVNMPLIR 115
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S3L599_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L599_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 8.580e-9 Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 1 VLQMTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
V MTWARA IF+GSD GK L+ +VA LPPL +ST VQ +NMP++RA
Sbjct: 72 VAGMTWARAAIFWGSDAGKAWLKQYETCPDVVATLLPPLAVSTAVQCVNMPLVRA 126
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S0CD34_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD34_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.800e-8 Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
MTWARA IF+GSD+GK+ L ++VA PPL +ST VQ++NMP++R+
Sbjct: 120 MTWARAAIFWGSDVGKQHLLQYESCPKLVATLFPPLAVSTFVQIVNMPLVRS 171
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S2KGR1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGR1_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.400e-8 Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 1 VLQMTWARAFIFYGSDLGKRELEDRGVKN-RIVAVGLPPLLLSTTVQLINMPIIRA 165
+L MTWARA IF+GSD+GK + VA+ LPPL +ST VQ++NMP++R+
Sbjct: 29 ILGMTWARAAIFFGSDIGKEAIMKSFPNTPESVAILLPPLTVSTAVQIVNMPLVRS 84 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig208302.6002.1 >prot_H-elongata_contig208302.6002.1 ID=prot_H-elongata_contig208302.6002.1|Name=mRNA_H-elongata_contig208302.6002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIback to top mRNA from alignment at H-elongata_contig208302:181..351- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig208302.6002.1 ID=mRNA_H-elongata_contig208302.6002.1|Name=mRNA_H-elongata_contig208302.6002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig208302:181..351- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig208302:181..351- >mRNA_H-elongata_contig208302.6002.1 ID=mRNA_H-elongata_contig208302.6002.1|Name=mRNA_H-elongata_contig208302.6002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig208302:181..351- (Himanthalia elongata Himel1 dioecious)back to top |