mRNA_H-elongata_contig208302.6002.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208302.6002.1
Unique NamemRNA_H-elongata_contig208302.6002.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: D7FU15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU15_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-17
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 VLQMTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            ++ MTWARAFIFYGSD GKR+LE+ G  +R+V V +PPL+ ST VQLINMPIIRA
Sbjct:   66 IIGMTWARAFIFYGSDRGKRKLEELGYSSRVVTVAVPPLVFSTVVQLINMPIIRA 120          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A835YRL8_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.600e-16
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            MTWARAFIFYGSD GK  LE RGV+++ + V LPPLL S+TVQL+N PIIRA
Sbjct:   76 MTWARAFIFYGSDWGKLYLERRGVESKTICVALPPLLCSSTVQLVNQPIIRA 127          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S1UGC6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGC6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.530e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 VLQMTWARAFIFYGSDLGKRELEDRG-VKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            V  MTWARA IF+GSDLG+++L++R  V++ ++A  LPPL+ ST VQ+ N PIIRA
Sbjct:   75 VFGMTWARAAIFFGSDLGRQQLKERRLVRSELLASALPPLVTSTVVQVCNQPIIRA 130          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S3ZNS9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.150e-10
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   10 MTWARAFIFYGSDLGKRELEDRGV--KNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            MTWAR  IFYGSD+G+R  E+  V  K  + A+ +PPL++ST VQ++N PIIRA
Sbjct:   66 MTWARFAIFYGSDVGRRWFEESQVFEKGSVAAIAVPPLIVSTGVQVVNQPIIRA 119          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A1Z5JEI3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEI3_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 5.860e-10
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 VLQMTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            VL MTWARA IF+GSD GK +L   G+      V LPPL++ST VQ +NMP++RA
Sbjct:   65 VLGMTWARAGIFWGSDYGKEQLMQMGMAESAATV-LPPLVVSTVVQCVNMPLVRA 118          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S3PGJ4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PGJ4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.450e-9
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            MTWARA IFYGSD+G+++L+     + ++A  LPPL LS+ VQ +NMP++RA
Sbjct:   78 MTWARAAIFYGSDIGRKKLKKHKF-HPVIATTLPPLFLSSFVQCVNMPLVRA 128          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: F2U662_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U662_SALR5)

HSP 1 Score: 59.7 bits (143), Expect = 3.950e-9
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIR 162
            MTWARA IFYGSD G+  L+  GV +   ++ LPPL +ST VQ++NMP+IR
Sbjct:   66 MTWARAAIFYGSDKGRHLLQAAGVGHS-ASIALPPLAISTCVQVVNMPLIR 115          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S3L599_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L599_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.580e-9
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 VLQMTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            V  MTWARA IF+GSD GK  L+       +VA  LPPL +ST VQ +NMP++RA
Sbjct:   72 VAGMTWARAAIFWGSDAGKAWLKQYETCPDVVATLLPPLAVSTAVQCVNMPLVRA 126          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S0CD34_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD34_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.800e-8
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   10 MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPIIRA 165
            MTWARA IF+GSD+GK+ L       ++VA   PPL +ST VQ++NMP++R+
Sbjct:  120 MTWARAAIFWGSDVGKQHLLQYESCPKLVATLFPPLAVSTFVQIVNMPLVRS 171          
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Match: A0A7S2KGR1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGR1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.400e-8
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 VLQMTWARAFIFYGSDLGKRELEDRGVKN-RIVAVGLPPLLLSTTVQLINMPIIRA 165
            +L MTWARA IF+GSD+GK  +          VA+ LPPL +ST VQ++NMP++R+
Sbjct:   29 ILGMTWARAAIFFGSDIGKEAIMKSFPNTPESVAILLPPLTVSTAVQIVNMPLVRS 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208302.6002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FU15_ECTSI1.370e-1769.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRL8_9STRA9.600e-1671.15Mitochondrial carrier domain-containing protein n=... [more]
A0A7S1UGC6_9STRA4.530e-1157.14Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3ZNS9_9STRA4.150e-1055.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5JEI3_FISSO5.860e-1056.36Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S3PGJ4_9STRA2.450e-953.85Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
F2U662_SALR53.950e-956.86Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S3L599_9STRA8.580e-954.55Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0CD34_9STRA1.800e-851.92Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2KGR1_9STRA2.400e-850.00Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208302contigH-elongata_contig208302:181..351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue4.1e-14
Seed eggNOG ortholog2880.D7FU15
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs2C9EI@1,2RYD4@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.849005-CDS-H-elongata_contig208302:180..3421622930164.849005-CDS-H-elongata_contig208302:180..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208302 181..342 -
1691679305.4487932-CDS-H-elongata_contig208302:180..3421691679305.4487932-CDS-H-elongata_contig208302:180..342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208302 181..342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.8640869-UTR-H-elongata_contig208302:342..3511622930164.8640869-UTR-H-elongata_contig208302:342..351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig208302 343..351 -
1691679305.4589777-UTR-H-elongata_contig208302:342..3511691679305.4589777-UTR-H-elongata_contig208302:342..351Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig208302 343..351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208302.6002.1prot_H-elongata_contig208302.6002.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208302 181..342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208302.6002.1

>prot_H-elongata_contig208302.6002.1 ID=prot_H-elongata_contig208302.6002.1|Name=mRNA_H-elongata_contig208302.6002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MTWARAFIFYGSDLGKRELEDRGVKNRIVAVGLPPLLLSTTVQLINMPII
RAR*
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mRNA from alignment at H-elongata_contig208302:181..351-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208302.6002.1 ID=mRNA_H-elongata_contig208302.6002.1|Name=mRNA_H-elongata_contig208302.6002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig208302:181..351- (Himanthalia elongata Himel1 dioecious)
GTTTTGCAGATGACCTGGGCGCGCGCGTTCATATTCTACGGCAGCGACCT CGGAAAGCGCGAGCTCGAGGATCGAGGGGTCAAGAATCGGATTGTCGCTG TGGGGCTCCCTCCTTTACTGCTGTCCACCACAGTCCAGCTCATCAATATG CCCATCATAAGGGCGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig208302:181..351-

>mRNA_H-elongata_contig208302.6002.1 ID=mRNA_H-elongata_contig208302.6002.1|Name=mRNA_H-elongata_contig208302.6002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig208302:181..351- (Himanthalia elongata Himel1 dioecious)
ATGACCTGGGCGCGCGCGTTCATATTCTACGGCAGCGACCTCGGAAAGCG
CGAGCTCGAGGATCGAGGGGTCAAGAATCGGATTGTCGCTGTGGGGCTCC
CTCCTTTACTGCTGTCCACCACAGTCCAGCTCATCAATATGCCCATCATA
AGGGCGAGGTAAATGACCTGGGCGCGCGCGTTCATATTCTACGGCAGCGA
CCTCGGAAAGCGCGAGCTCGAGGATCGAGGGGTCAAGAATCGGATTGTCG
CTGTGGGGCTCCCTCCTTTACTGCTGTCCACCACAGTCCAGCTCATCAAT
ATGCCCATCATAAGGGCGAGGTAA
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