mRNA_H-elongata_contig208244.6001.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208244.6001.1
Unique NamemRNA_H-elongata_contig208244.6001.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208244.6001.1 vs. uniprot
Match: A0A6H5JSL1_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.400e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YSPKELLSAVQKVDPIFKGTHQQDAHELFMCLMGTLED 114
            YSPK LLSA+Q+V P F+G HQ DAHE+F+ L+GTLED
Sbjct:   14 YSPKTLLSALQRVHPSFRGYHQHDAHEVFIRLVGTLED 51
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BLAST of mRNA_H-elongata_contig208244.6001.1 vs. uniprot
Match: D7FRB3_ECTSI (Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.020e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YSPKELLSAVQKVDPIFKGTHQQDAHELFMCLMGTLED 114
            YSPK LLSA+Q+V P F+G +Q DAHE+FM L+GTLED
Sbjct:   18 YSPKTLLSALQRVHPSFRGYYQHDAHEMFMRLVGTLED 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208244.6001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSL1_9PHAE4.400e-968.42USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRB3_ECTSI6.020e-968.42Ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208244contigH-elongata_contig208244:668..781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.820024-CDS-H-elongata_contig208244:667..7811622930164.820024-CDS-H-elongata_contig208244:667..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208244 668..781 +
1691679305.4395022-CDS-H-elongata_contig208244:667..7811691679305.4395022-CDS-H-elongata_contig208244:667..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208244 668..781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208244.6001.1prot_H-elongata_contig208244.6001.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208244 668..781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208244.6001.1

>prot_H-elongata_contig208244.6001.1 ID=prot_H-elongata_contig208244.6001.1|Name=mRNA_H-elongata_contig208244.6001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
YSPKELLSAVQKVDPIFKGTHQQDAHELFMCLMGTLED
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mRNA from alignment at H-elongata_contig208244:668..781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208244.6001.1 ID=mRNA_H-elongata_contig208244.6001.1|Name=mRNA_H-elongata_contig208244.6001.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig208244:668..781+ (Himanthalia elongata Himel1 dioecious)
TACAGCCCAAAGGAACTGCTGTCAGCTGTTCAGAAGGTCGATCCTATCTT
CAAGGGCACTCATCAGCAAGACGCACACGAACTCTTTATGTGCCTTATGG
GCACCCTGGAGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig208244:668..781+

>mRNA_H-elongata_contig208244.6001.1 ID=mRNA_H-elongata_contig208244.6001.1|Name=mRNA_H-elongata_contig208244.6001.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig208244:668..781+ (Himanthalia elongata Himel1 dioecious)
TACAGCCCAAAGGAACTGCTGTCAGCTGTTCAGAAGGTCGATCCTATCTT
CAAGGGCACTCATCAGCAAGACGCACACGAACTCTTTATGTGCCTTATGG
GCACCCTGGAGGACTACAGCCCAAAGGAACTGCTGTCAGCTGTTCAGAAG
GTCGATCCTATCTTCAAGGGCACTCATCAGCAAGACGCACACGAACTCTT
TATGTGCCTTATGGGCACCCTGGAGGAC
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