mRNA_H-elongata_contig208228.6000.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208228.6000.1
Unique NamemRNA_H-elongata_contig208228.6000.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208228.6000.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.840e-20
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 GGRDEVVSRLPATPHYNSAVLEDMCIKDHLAALHGLCGDSQAFRDAIILGKV 156
            GG +E+VS L ATPHYNSA+LEDMC+ +HLAALHG+CGDS+AFRDAIILGKV
Sbjct:  336 GGGEELVSSLSATPHYNSAILEDMCMTEHLAALHGICGDSEAFRDAIILGKV 387
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BLAST of mRNA_H-elongata_contig208228.6000.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.510e-20
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 GGRDEVVSRLPATPHYNSAVLEDMCIKDHLAALHGLCGDSQAFRDAIILGKV 156
            GG +E+VS L ATPHYNSA+LEDMC+ +HLAALHG+CGDS+AFRDAIILGKV
Sbjct:  341 GGGEELVSSLSATPHYNSAILEDMCMTEHLAALHGICGDSKAFRDAIILGKV 392
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BLAST of mRNA_H-elongata_contig208228.6000.1 vs. uniprot
Match: A0A836CBT1_9STRA (Nrap protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.000e-6
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   31 PATPHYNSAVLEDMCIKDHLAALHGLCGDSQAFRDAIILGKV 156
            P TP YN+AVLEDM +  HLAALH     S   RDAI+L KV
Sbjct:  274 PPTPCYNAAVLEDMAMARHLAALHAASAASPGLRDAIMLAKV 315
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BLAST of mRNA_H-elongata_contig208228.6000.1 vs. uniprot
Match: S3CKE5_GLAL2 (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3CKE5_GLAL2)

HSP 1 Score: 47.8 bits (112), Expect = 7.380e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   28 LPATPHYNSAVLEDMCIKDHLAALHGLCGDSQAFRDAIILGKV 156
            LPATP YNS++  D   + +L  LH     S+AFRDA++LG++
Sbjct:  292 LPATPFYNSSLFSDANYEPYLQVLHSATKQSEAFRDAVVLGRI 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208228.6000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FGX0_ECTSI1.840e-2078.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEV9_9PHAE2.510e-2078.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBT1_9STRA6.000e-659.52Nrap protein-domain-containing protein n=1 Tax=Tri... [more]
S3CKE5_GLAL27.380e-546.51U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208228contigH-elongata_contig208228:584..739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5e-17
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.7846014-CDS-H-elongata_contig208228:583..7391622930164.7846014-CDS-H-elongata_contig208228:583..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208228 584..739 -
1691679305.4275765-CDS-H-elongata_contig208228:583..7391691679305.4275765-CDS-H-elongata_contig208228:583..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208228 584..739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208228.6000.1prot_H-elongata_contig208228.6000.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208228 584..739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208228.6000.1

>prot_H-elongata_contig208228.6000.1 ID=prot_H-elongata_contig208228.6000.1|Name=mRNA_H-elongata_contig208228.6000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
GGRDEVVSRLPATPHYNSAVLEDMCIKDHLAALHGLCGDSQAFRDAIILG
KV
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mRNA from alignment at H-elongata_contig208228:584..739-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208228.6000.1 ID=mRNA_H-elongata_contig208228.6000.1|Name=mRNA_H-elongata_contig208228.6000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig208228:584..739- (Himanthalia elongata Himel1 dioecious)
GGAGGGAGAGATGAGGTGGTATCACGGCTGCCGGCGACGCCACACTACAA
CAGCGCCGTATTGGAGGACATGTGCATCAAGGACCACCTCGCCGCCCTCC
ATGGGCTCTGTGGAGACTCGCAAGCGTTTCGCGATGCTATTATCCTGGGC
AAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig208228:584..739-

>mRNA_H-elongata_contig208228.6000.1 ID=mRNA_H-elongata_contig208228.6000.1|Name=mRNA_H-elongata_contig208228.6000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig208228:584..739- (Himanthalia elongata Himel1 dioecious)
GGAGGGAGAGATGAGGTGGTATCACGGCTGCCGGCGACGCCACACTACAA
CAGCGCCGTATTGGAGGACATGTGCATCAAGGACCACCTCGCCGCCCTCC
ATGGGCTCTGTGGAGACTCGCAAGCGTTTCGCGATGCTATTATCCTGGGC
AAGGTAGGAGGGAGAGATGAGGTGGTATCACGGCTGCCGGCGACGCCACA
CTACAACAGCGCCGTATTGGAGGACATGTGCATCAAGGACCACCTCGCCG
CCCTCCATGGGCTCTGTGGAGACTCGCAAGCGTTTCGCGATGCTATTATC
CTGGGCAAGGTA
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