mRNA_H-elongata_contig208211.5999.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A8H7PPD2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PPD2_9FUNG) HSP 1 Score: 84.7 bits (208), Expect = 5.650e-18 Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 1 MIITTCERSQVDDTWP---KLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQ 237
+I T+CE D T K +GT+AVN+++C+ KD FTRMF TV +P+PA +YLLF ARD +T+AASFN P S+++Q
Sbjct: 105 VIDTSCEHLSRDKTQTSAAKFVGTTAVNMSACIYKDRAFTRMFGTVATKPLPALSYLLFAARDSLTIAASFNAPPIVSQWIQ 186
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A8K1CT18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT18_PYTOL) HSP 1 Score: 80.1 bits (196), Expect = 2.570e-16 Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
I T C+ + D+ PK +GT+AVN+ C+AKD FT+MF + P P ++ LF RD MTVAASFN P ++ LQE+
Sbjct: 96 IETLCDATDTDNQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASVGLFAIRDSMTVAASFNAPKIMAQQLQEK 175
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A163AVY2_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163AVY2_PHYB8) HSP 1 Score: 79.3 bits (194), Expect = 7.220e-16 Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 4 IITTCERSQVD---DTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
I TTCE VD + K IGTS VN++ C+ KD FTRMF +P+P TYLLF ARD MT+AASF P S LQ+
Sbjct: 105 IETTCENYSVDLNRTAFLKFIGTSIVNMSLCIIKDRAFTRMFGVSAAKPLPLLTYLLFAARDSMTIAASFTAPSYISATLQQ 186
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.890e-15 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
I T CE ++ D+ PK IGT+AVN++ C+AKD F RMF + P P ++ LF RD +TVAASFN P +K L++
Sbjct: 96 IDTMCEFAEKDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLASIGLFAVRDSLTVAASFNAPKFLAKKLED 174
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A2D4BK36_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK36_PYTIN) HSP 1 Score: 77.4 bits (189), Expect = 2.710e-15 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
I T C+ + + PK +GT+AVN+ C+AKD FT+MF + P P ++ LF RD +TVAASFN P +K L+ER
Sbjct: 97 IDTLCDVTDTNSQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASIGLFAVRDALTVAASFNAPRVVAKELRER 176
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A2D4BMX9_PYTIN (NUP50 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMX9_PYTIN) HSP 1 Score: 77.4 bits (189), Expect = 9.440e-15 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
I T C+ + + PK +GT+AVN+ C+AKD FT+MF + P P ++ LF RD +TVAASFN P +K L+ER
Sbjct: 647 IDTLCDVTDTNSQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASIGLFAVRDALTVAASFNAPRVVAKELRER 726
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: W2KIJ3_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2KIJ3_PHYPR) HSP 1 Score: 75.9 bits (185), Expect = 1.010e-14 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
CE + D+ PK IGT+AVN++ C+AKD F RMF + P P ++ LF RD MT ASFN P +K ++++
Sbjct: 100 CEYGETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDK 175
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A3M6VQY3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQY3_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.020e-14 Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
CE + D+ PK IGT+AVN++ C+AKD F RMF + P P ++ LF RD MT AASFN P +K +++
Sbjct: 101 CEYIETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLASIGLFAVRDSMTCAASFNAPKVLAKKIED 175
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: H6S466_PLAVT (Uncharacterized protein (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S466_PLAVT) HSP 1 Score: 75.1 bits (183), Expect = 1.330e-14 Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
CE ++ D+ PK IGT+AVN++ C+AKD F RMF + P P ++ LF RD +T AASFN P ++ LQ+
Sbjct: 72 CEYTETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIVPGSFPLASIGLFAMRDSLTCAASFNAPHVLAEKLQD 146
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: G4ZUB7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZUB7_PHYSP) HSP 1 Score: 75.5 bits (184), Expect = 1.440e-14 Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
CE ++ D+ PK IGT+AVN++ C+AKD F RMF + P P ++ LF RD MT ASFN P +K +++
Sbjct: 102 CEYAEADNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIED 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig208211.5999.1 >prot_H-elongata_contig208211.5999.1 ID=prot_H-elongata_contig208211.5999.1|Name=mRNA_H-elongata_contig208211.5999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp MIITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPAback to top mRNA from alignment at H-elongata_contig208211:492..1037- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig208211.5999.1 ID=mRNA_H-elongata_contig208211.5999.1|Name=mRNA_H-elongata_contig208211.5999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=546bp|location=Sequence derived from alignment at H-elongata_contig208211:492..1037- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig208211:492..1037- >mRNA_H-elongata_contig208211.5999.1 ID=mRNA_H-elongata_contig208211.5999.1|Name=mRNA_H-elongata_contig208211.5999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig208211:492..1037- (Himanthalia elongata Himel1 dioecious)back to top |