mRNA_H-elongata_contig208211.5999.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208211.5999.1
Unique NamemRNA_H-elongata_contig208211.5999.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A8H7PPD2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PPD2_9FUNG)

HSP 1 Score: 84.7 bits (208), Expect = 5.650e-18
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 MIITTCERSQVDDTWP---KLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQ 237
            +I T+CE    D T     K +GT+AVN+++C+ KD  FTRMF TV  +P+PA +YLLF ARD +T+AASFN P   S+++Q
Sbjct:  105 VIDTSCEHLSRDKTQTSAAKFVGTTAVNMSACIYKDRAFTRMFGTVATKPLPALSYLLFAARDSLTIAASFNAPPIVSQWIQ 186          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A8K1CT18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT18_PYTOL)

HSP 1 Score: 80.1 bits (196), Expect = 2.570e-16
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
            I T C+ +  D+  PK +GT+AVN+  C+AKD  FT+MF  + P   P ++  LF  RD MTVAASFN P   ++ LQE+
Sbjct:   96 IETLCDATDTDNQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASVGLFAIRDSMTVAASFNAPKIMAQQLQEK 175          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A163AVY2_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163AVY2_PHYB8)

HSP 1 Score: 79.3 bits (194), Expect = 7.220e-16
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    4 IITTCERSQVD---DTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
            I TTCE   VD     + K IGTS VN++ C+ KD  FTRMF     +P+P  TYLLF ARD MT+AASF  P   S  LQ+
Sbjct:  105 IETTCENYSVDLNRTAFLKFIGTSIVNMSLCIIKDRAFTRMFGVSAAKPLPLLTYLLFAARDSMTIAASFTAPSYISATLQQ 186          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.890e-15
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
            I T CE ++ D+  PK IGT+AVN++ C+AKD  F RMF  + P   P ++  LF  RD +TVAASFN P   +K L++
Sbjct:   96 IDTMCEFAEKDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLASIGLFAVRDSLTVAASFNAPKFLAKKLED 174          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A2D4BK36_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK36_PYTIN)

HSP 1 Score: 77.4 bits (189), Expect = 2.710e-15
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
            I T C+ +  +   PK +GT+AVN+  C+AKD  FT+MF  + P   P ++  LF  RD +TVAASFN P   +K L+ER
Sbjct:   97 IDTLCDVTDTNSQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASIGLFAVRDALTVAASFNAPRVVAKELRER 176          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A2D4BMX9_PYTIN (NUP50 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMX9_PYTIN)

HSP 1 Score: 77.4 bits (189), Expect = 9.440e-15
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 IITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
            I T C+ +  +   PK +GT+AVN+  C+AKD  FT+MF  + P   P ++  LF  RD +TVAASFN P   +K L+ER
Sbjct:  647 IDTLCDVTDTNSQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASIGLFAVRDALTVAASFNAPRVVAKELRER 726          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: W2KIJ3_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2KIJ3_PHYPR)

HSP 1 Score: 75.9 bits (185), Expect = 1.010e-14
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQER 243
            CE  + D+  PK IGT+AVN++ C+AKD  F RMF  + P   P ++  LF  RD MT  ASFN P   +K ++++
Sbjct:  100 CEYGETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIEDK 175          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: A0A3M6VQY3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQY3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.020e-14
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
            CE  + D+  PK IGT+AVN++ C+AKD  F RMF  + P   P ++  LF  RD MT AASFN P   +K +++
Sbjct:  101 CEYIETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLASIGLFAVRDSMTCAASFNAPKVLAKKIED 175          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: H6S466_PLAVT (Uncharacterized protein (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S466_PLAVT)

HSP 1 Score: 75.1 bits (183), Expect = 1.330e-14
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
            CE ++ D+  PK IGT+AVN++ C+AKD  F RMF  + P   P ++  LF  RD +T AASFN P   ++ LQ+
Sbjct:   72 CEYTETDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIVPGSFPLASIGLFAMRDSLTCAASFNAPHVLAEKLQD 146          
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Match: G4ZUB7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZUB7_PHYSP)

HSP 1 Score: 75.5 bits (184), Expect = 1.440e-14
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   16 CERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASKYLQE 240
            CE ++ D+  PK IGT+AVN++ C+AKD  F RMF  + P   P ++  LF  RD MT  ASFN P   +K +++
Sbjct:  102 CEYAEADNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLTSIGLFAVRDSMTCGASFNAPKVLAKKIED 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208211.5999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7PPD2_9FUNG5.650e-1850.00Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A8K1CT18_PYTOL2.570e-1646.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A163AVY2_PHYB87.220e-1651.22Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A662XCZ4_9STRA1.890e-1546.84Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2D4BK36_PYTIN2.710e-1545.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4BMX9_PYTIN9.440e-1545.00NUP50 domain-containing protein n=1 Tax=Pythium in... [more]
W2KIJ3_PHYPR1.010e-1443.42Uncharacterized protein n=15 Tax=Peronosporaceae T... [more]
A0A3M6VQY3_9STRA1.020e-1445.33Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
H6S466_PLAVT1.330e-1445.33Uncharacterized protein (Fragment) n=1 Tax=Plasmop... [more]
G4ZUB7_PHYSP1.440e-1444.00Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208211contigH-elongata_contig208211:492..1037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score85.1
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog588596.U9TUA2
EggNOG OGs28PN9@1,2QWAD@2759,39RZR@33154,3NY18@4751
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size251
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.742895-CDS-H-elongata_contig208211:491..6441622930164.742895-CDS-H-elongata_contig208211:491..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208211 492..644 -
1691679305.4031668-CDS-H-elongata_contig208211:491..6441691679305.4031668-CDS-H-elongata_contig208211:491..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208211 492..644 -
1622930164.7561095-CDS-H-elongata_contig208211:941..10371622930164.7561095-CDS-H-elongata_contig208211:941..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208211 942..1037 -
1691679305.4177134-CDS-H-elongata_contig208211:941..10371691679305.4177134-CDS-H-elongata_contig208211:941..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208211 942..1037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208211.5999.1prot_H-elongata_contig208211.5999.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208211 492..1037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208211.5999.1

>prot_H-elongata_contig208211.5999.1 ID=prot_H-elongata_contig208211.5999.1|Name=mRNA_H-elongata_contig208211.5999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MIITTCERSQVDDTWPKLIGTSAVNIASCVAKDLQFTRMFATVKPRPIPA
STYLLFTARDGMTVAASFNMPDPASKYLQERLG
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mRNA from alignment at H-elongata_contig208211:492..1037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208211.5999.1 ID=mRNA_H-elongata_contig208211.5999.1|Name=mRNA_H-elongata_contig208211.5999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=546bp|location=Sequence derived from alignment at H-elongata_contig208211:492..1037- (Himanthalia elongata Himel1 dioecious)
ATGATCATCACGACTTGTGAGCGAAGTCAGGTGGACGACACGTGGCCTAA GCTCATCGGCACCAGCGCGGTCAACATCGCCAGTTGTGTCGCAAAGGTAA CCGCGCGTTCCTGCTTTCAGGATACGAACACATAGTGTATGATAGCTCGA ATATCATATGAACATTATTCCCTTGTCCTTAGGGGTAATCAAAATTGCTG TAAATAGTAGCCGTGCTTGATAAATACCGCTATTAGCAATGTAAAATGTA ATGTATGTGTGTAAAATGCTCTTTGTACTCATGCACTTGATCACAAGCGT TTTCTCAGGAGAAATACATCAAAAGCTAAAATGATTGGTGGCAAATATCA TATATGTTTCGTTCGTGAATATTACTTTCCCTCGCGCGACCAGGATCTAC AATTCACGCGTATGTTCGCAACGGTGAAGCCGAGACCAATTCCAGCTTCG ACGTACCTTCTGTTCACGGCCCGTGACGGCATGACCGTCGCAGCGTCGTT CAACATGCCTGATCCGGCGTCGAAATACCTCCAAGAGCGACTCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig208211:492..1037-

>mRNA_H-elongata_contig208211.5999.1 ID=mRNA_H-elongata_contig208211.5999.1|Name=mRNA_H-elongata_contig208211.5999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig208211:492..1037- (Himanthalia elongata Himel1 dioecious)
ATGATCATCACGACTTGTGAGCGAAGTCAGGTGGACGACACGTGGCCTAA
GCTCATCGGCACCAGCGCGGTCAACATCGCCAGTTGTGTCGCAAAGATGA
TCATCACGACTTGTGAGCGAAGTCAGGTGGACGACACGTGGCCTAAGCTC
ATCGGCACCAGCGCGGTCAACATCGCCAGTTGTGTCGCAAAGGATCTACA
ATTCACGCGTATGTTCGCAACGGTGAAGCCGAGACCAATTCCAGCTTCGA
CGTACCTTCTGTTCACGGCCCGTGACGGCATGACCGTCGCAGCGTCGTTC
AACATGCCTGATCCGGCGTCGAAATACCTCCAAGAGCGACTCGGAGATCT
ACAATTCACGCGTATGTTCGCAACGGTGAAGCCGAGACCAATTCCAGCTT
CGACGTACCTTCTGTTCACGGCCCGTGACGGCATGACCGTCGCAGCGTCG
TTCAACATGCCTGATCCGGCGTCGAAATACCTCCAAGAGCGACTCGGA
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