mRNA_H-elongata_contig208207.5998.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208207.5998.1
Unique NamemRNA_H-elongata_contig208207.5998.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208207.5998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208207contigH-elongata_contig208207:196..1031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.6963344-CDS-H-elongata_contig208207:197..2711622930163.6963344-CDS-H-elongata_contig208207:197..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208207 198..271 -
1691679305.3739965-CDS-H-elongata_contig208207:197..2711691679305.3739965-CDS-H-elongata_contig208207:197..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208207 198..271 -
1622930164.709652-CDS-H-elongata_contig208207:943..10311622930164.709652-CDS-H-elongata_contig208207:943..1031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208207 944..1031 -
1691679305.3880014-CDS-H-elongata_contig208207:943..10311691679305.3880014-CDS-H-elongata_contig208207:943..1031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208207 944..1031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208207.5998.1prot_H-elongata_contig208207.5998.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208207 198..1031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208207.5998.1

>prot_H-elongata_contig208207.5998.1 ID=prot_H-elongata_contig208207.5998.1|Name=mRNA_H-elongata_contig208207.5998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
SEPTISTDEGVNDESLSNRGDFVLHAGDADFPRKEAEGKVALSSSGKTES
TGED
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mRNA from alignment at H-elongata_contig208207:196..1031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208207.5998.1 ID=mRNA_H-elongata_contig208207.5998.1|Name=mRNA_H-elongata_contig208207.5998.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=836bp|location=Sequence derived from alignment at H-elongata_contig208207:196..1031- (Himanthalia elongata Himel1 dioecious)
TCTGAACCAACCATTAGCACGGATGAGGGCGTTAATGACGAATCTCTGTC
GAACAGGGGAGATTTTGTTCTCCACGCAGGTGATGCAGGTGCGCAAATAA
CAGTATGTTCGTGAGACTAGGAACATATTATGAGATGAGGAATGGGGAAA
TTATCTAACTAAGTGCGTTTCTTCTATGTTCGTGATACTTAAAAACGGAT
TTTAAAATAAGAGAAGGGGGATTTTTTATTACTCATCTTATAATCCCTTC
TCAGTCTCACGAACATGCTATTAAATGTAGAAGCAAAATTGCATCGTACC
GAAAAATTGTCGGGCGTCCGGGTCGAGGGCTTCGCCTCGGAGGCATGCAT
AGTTTAGTAACATTCTCAAAGTATTTGGTCCATAAGGTCACCTTAATAAG
CTACACCCGTTACTCAAGCTACATTGATGACTACTGGCTCAGTGTCAGCG
GACTATTGAGGGTAAACGGCCTGATAAACTCGGGATTATCCCGATGGCGG
TTAACGGTAAAGACGGACGCCGTCGCGGAAAACAAGAGGATCGATATGAT
CCCCGGAGTACGCACCAGATTCAGCCTGGGTTGAGAGAATGAGCAGGCTG
GCACGGAACGGGACTGCCGAGCCTGTCTCGCGAGAAAAAAAAATCCATGT
TCAGCTGACCACAAGCAGGAGGCAACCTAATCCGGTTAATATTTACTCTG
CTGTATGTGATGACCTCACAGAGAATCGACTGCTCCTATCTCATCGATCG
CCGTTGGCAGATTTTCCACGTAAGGAGGCCGAGGGTAAGGTTGCTCTTAG
TAGTTCGGGGAAGACGGAATCAACAGGCGAAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig208207:196..1031-

>mRNA_H-elongata_contig208207.5998.1 ID=mRNA_H-elongata_contig208207.5998.1|Name=mRNA_H-elongata_contig208207.5998.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig208207:196..1031- (Himanthalia elongata Himel1 dioecious)
TCTGAACCAACCATTAGCACGGATGAGGGCGTTAATGACGAATCTCTGTC
GAACAGGGGAGATTTTGTTCTCCACGCAGGTGATGCAGTCTGAACCAACC
ATTAGCACGGATGAGGGCGTTAATGACGAATCTCTGTCGAACAGGGGAGA
TTTTGTTCTCCACGCAGGTGATGCAGATTTTCCACGTAAGGAGGCCGAGG
GTAAGGTTGCTCTTAGTAGTTCGGGGAAGACGGAATCAACAGGCGAAGAT
ATTTTCCACGTAAGGAGGCCGAGGGTAAGGTTGCTCTTAGTAGTTCGGGG
AAGACGGAATCAACAGGCGAAGAT
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