mRNA_H-elongata_contig208198.5997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208198.5997.1
Unique NamemRNA_H-elongata_contig208198.5997.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5JRE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 8.020e-16
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNT+SP ++ + T+ + QWP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:   30 RQRWARWFHKLLNTRSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAE 95
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5K2N1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-15
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ +  + + +WP   PL + P++ E+ +AVR +ANGKAVGPD +  E
Sbjct:  428 RQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCEPLDVMPSLLEVEEAVRDMANGKAVGPDDLPAE 493
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5K3I4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.070e-14
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPD 183
            R+RWARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +AVR +AN KAVGPD
Sbjct:  158 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPD 218
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-14
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ +  + + QWP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:   75 RQRWARWFHXLLNTKSPTIDLHAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPDDLPAE 140
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5JP69_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP69_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ +  + + +WP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:   30 RQRWARWFLKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAE 95
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5K0P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.880e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ +  + + +WP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:   75 RQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAE 140
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.010e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ +  + + +WP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:   74 RQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAE 139
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.180e-14
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:   30 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAE 95
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.190e-14
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:  328 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAE 393
[Close]
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Match: A0A6H5K3M1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.220e-14
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVRSLANGKAVGPDGVSIE 198
            R+RWARWF  LLNTKSP ++ + T+ + QWP   PL   P++ E+ +AVR +AN KAVGPD +  E
Sbjct:  436 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAE 501
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208198.5997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE2_9PHAE8.020e-1650.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2N1_9PHAE1.840e-1550.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3I4_9PHAE1.070e-1454.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJR4_9PHAE1.100e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP69_9PHAE1.220e-1448.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0P7_9PHAE1.880e-1448.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXZ7_9PHAE2.010e-1448.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE31_9PHAE2.180e-1451.52Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE2.190e-1451.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M1_9PHAE2.220e-1451.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208198contigH-elongata_contig208198:86..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.6557035-CDS-H-elongata_contig208198:85..2831622930163.6557035-CDS-H-elongata_contig208198:85..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208198 86..283 -
1691679305.3511205-CDS-H-elongata_contig208198:85..2831691679305.3511205-CDS-H-elongata_contig208198:85..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208198 86..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208198.5997.1prot_H-elongata_contig208198.5997.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208198 86..283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208198.5997.1

>prot_H-elongata_contig208198.5997.1 ID=prot_H-elongata_contig208198.5997.1|Name=mRNA_H-elongata_contig208198.5997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
RERWARWFQTLLNTKSPALEPNITEGLDQWPENTPLGIQPTMQELTDAVR
SLANGKAVGPDGVSIE
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mRNA from alignment at H-elongata_contig208198:86..283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208198.5997.1 ID=mRNA_H-elongata_contig208198.5997.1|Name=mRNA_H-elongata_contig208198.5997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig208198:86..283- (Himanthalia elongata Himel1 dioecious)
CGCGAACGATGGGCCCGCTGGTTCCAAACCCTCCTGAACACCAAATCGCC
GGCGCTCGAGCCGAACATTACTGAAGGCCTCGACCAGTGGCCGGAGAACA
CACCGCTGGGAATTCAGCCCACGATGCAGGAGTTGACAGACGCCGTCCGC
TCGTTAGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCCATTGAA
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Coding sequence (CDS) from alignment at H-elongata_contig208198:86..283-

>mRNA_H-elongata_contig208198.5997.1 ID=mRNA_H-elongata_contig208198.5997.1|Name=mRNA_H-elongata_contig208198.5997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig208198:86..283- (Himanthalia elongata Himel1 dioecious)
CGCGAACGATGGGCCCGCTGGTTCCAAACCCTCCTGAACACCAAATCGCC
GGCGCTCGAGCCGAACATTACTGAAGGCCTCGACCAGTGGCCGGAGAACA
CACCGCTGGGAATTCAGCCCACGATGCAGGAGTTGACAGACGCCGTCCGC
TCGTTAGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCCATTGAACG
CGAACGATGGGCCCGCTGGTTCCAAACCCTCCTGAACACCAAATCGCCGG
CGCTCGAGCCGAACATTACTGAAGGCCTCGACCAGTGGCCGGAGAACACA
CCGCTGGGAATTCAGCCCACGATGCAGGAGTTGACAGACGCCGTCCGCTC
GTTAGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCCATTGAA
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