mRNA_H-elongata_contig208125.5996.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208125.5996.1
Unique NamemRNA_H-elongata_contig208125.5996.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: A0A6H5JZR4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.090e-19
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 RAAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            RAA+FP+PYV+AYGE+QRH+ +GRPLYLD+RRYD+VR LWV HLVAHEV
Sbjct:  279 RAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEV 327
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: A0A6S9LH47_HETAK (E3 ubiquitin-protein ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LH47_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 3.690e-9
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 RAAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            RAA+FP+PYV+AYGE+ +   +GRPLYLD RR  +V  LW  H V  EV
Sbjct:   36 RAAYFPSPYVDAYGERHKQ-FRGRPLYLDARRLAVVAALWRAHGVPREV 83
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: A0A835YQN3_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.340e-9
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 RAAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            RAA+F +PYV+AYGE+ R   +GRPL++DERRY ++R L+  H VA EV
Sbjct: 1705 RAAYFASPYVDAYGERHRQP-RGRPLFMDERRYSVLRDLYARHAVAAEV 1752
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: K8YUN0_NANGC (E3 ubiquitin-protein ligase n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUN0_NANGC)

HSP 1 Score: 57.4 bits (137), Expect = 2.550e-8
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 RAAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            RA +FP+PYV+ YGE+ +   +GRPL+LDERR + +RR+W    V +EV
Sbjct:  775 RACYFPSPYVDVYGERHKQ-FRGRPLHLDERRLEALRRVWAKQRVPYEV 822
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: W7U0V5_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.560e-8
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 RAAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            RA +FP+PYV+ YGE+ +   +GRPL+LDERR + +RR+W    V +EV
Sbjct: 2520 RACYFPSPYVDVYGERHKQ-FRGRPLHLDERRLEALRRVWAKQRVPYEV 2567
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: A0A0W8DRT2_PHYNI (E3 ubiquitin-protein ligase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DRT2_PHYNI)

HSP 1 Score: 54.3 bits (129), Expect = 3.110e-7
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 AAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            AA+FP+PYV+AYGE+     +GRPL LD  RY  +  LW+NH +  EV
Sbjct:  505 AAYFPSPYVDAYGEEDIGLQRGRPLRLDMARYRYLESLWLNHRIFTEV 552
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: V9EHL0_PHYPR (E3 ubiquitin-protein ligase n=5 Tax=Phytophthora TaxID=4783 RepID=V9EHL0_PHYPR)

HSP 1 Score: 54.3 bits (129), Expect = 3.130e-7
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 AAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            AA+FP+PYV+AYGE+     +GRPL LD  RY  +  LW+NH +  EV
Sbjct: 2238 AAYFPSPYVDAYGEEDIGLQRGRPLRLDMARYRYLESLWLNHRIFTEV 2285
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: A0A7S3HU19_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU19_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.850e-7
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 RAAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            R+ +F +PYV+ YGE Q H  +G+PLYLD RRY+ + R++  H +  EV
Sbjct: 2095 RSLYFASPYVDVYGESQ-HQYRGKPLYLDPRRYEALTRIYNTHQIPREV 2142
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: A0A662XS99_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XS99_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.500e-6
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 AAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            AA+FP+PYV+A+GE+     +GRPL LD  RY  +  LW+NH +  EV
Sbjct: 1255 AAYFPSPYVDAHGEEDVGLQRGRPLRLDMARYRYLEMLWLNHRIFTEV 1302
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BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Match: A0A833T457_PHYIN (E3 ubiquitin-protein ligase n=14 Tax=Phytophthora TaxID=4783 RepID=A0A833T457_PHYIN)

HSP 1 Score: 52.4 bits (124), Expect = 1.500e-6
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 AAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV 147
            AA+FP+PYV+A+GE+     +GRPL LD  RY  +  LW+NH +  EV
Sbjct: 2246 AAYFPSPYVDAHGEEDIGLQRGRPLRLDMSRYRYLESLWLNHRIFTEV 2293
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208125.5996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JZR4_9PHAE1.090e-1977.55E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A6S9LH47_HETAK3.690e-957.14E3 ubiquitin-protein ligase n=1 Tax=Heterosigma ak... [more]
A0A835YQN3_9STRA5.340e-957.14E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
K8YUN0_NANGC2.550e-851.02E3 ubiquitin-protein ligase n=2 Tax=Nannochloropsi... [more]
W7U0V5_9STRA2.560e-851.02E3 ubiquitin-protein ligase n=2 Tax=Monodopsidacea... [more]
A0A0W8DRT2_PHYNI3.110e-752.08E3 ubiquitin-protein ligase n=1 Tax=Phytophthora n... [more]
V9EHL0_PHYPR3.130e-752.08E3 ubiquitin-protein ligase n=5 Tax=Phytophthora T... [more]
A0A7S3HU19_9STRA5.850e-746.94E3 ubiquitin-protein ligase n=1 Tax=Spumella elong... [more]
A0A662XS99_9STRA1.500e-650.00E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Not... [more]
A0A833T457_PHYIN1.500e-650.00E3 ubiquitin-protein ligase n=14 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208125contigH-elongata_contig208125:5..151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.625438-CDS-H-elongata_contig208125:4..1511622930163.625438-CDS-H-elongata_contig208125:4..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208125 5..151 +
1691679305.331208-CDS-H-elongata_contig208125:4..1511691679305.331208-CDS-H-elongata_contig208125:4..151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208125 5..151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208125.5996.1prot_H-elongata_contig208125.5996.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208125 5..151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208125.5996.1

>prot_H-elongata_contig208125.5996.1 ID=prot_H-elongata_contig208125.5996.1|Name=mRNA_H-elongata_contig208125.5996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
RAAFFPTPYVNAYGEQQRHNLKGRPLYLDERRYDLVRRLWVNHLVAHEV
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mRNA from alignment at H-elongata_contig208125:5..151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208125.5996.1 ID=mRNA_H-elongata_contig208125.5996.1|Name=mRNA_H-elongata_contig208125.5996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig208125:5..151+ (Himanthalia elongata Himel1 dioecious)
CGGGCGGCGTTCTTCCCGACCCCGTACGTGAACGCCTACGGTGAGCAACA
GCGACACAATTTAAAGGGACGGCCCTTGTACCTAGATGAGAGGCGCTACG
ACCTTGTCAGGCGGCTCTGGGTCAACCACCTGGTGGCGCACGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig208125:5..151+

>mRNA_H-elongata_contig208125.5996.1 ID=mRNA_H-elongata_contig208125.5996.1|Name=mRNA_H-elongata_contig208125.5996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig208125:5..151+ (Himanthalia elongata Himel1 dioecious)
CGGGCGGCGTTCTTCCCGACCCCGTACGTGAACGCCTACGGTGAGCAACA
GCGACACAATTTAAAGGGACGGCCCTTGTACCTAGATGAGAGGCGCTACG
ACCTTGTCAGGCGGCTCTGGGTCAACCACCTGGTGGCGCACGAGGTGCGG
GCGGCGTTCTTCCCGACCCCGTACGTGAACGCCTACGGTGAGCAACAGCG
ACACAATTTAAAGGGACGGCCCTTGTACCTAGATGAGAGGCGCTACGACC
TTGTCAGGCGGCTCTGGGTCAACCACCTGGTGGCGCACGAGGTG
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