mRNA_H-elongata_contig208112.5995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208112.5995.1
Unique NamemRNA_H-elongata_contig208112.5995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: A0A2R4QQ84_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ84_9PHAE)

HSP 1 Score: 630 bits (1625), Expect = 3.250e-222
Identity = 318/352 (90.34%), Postives = 338/352 (96.02%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIFICFG+VDYATVFAFAPQL+S TL FLN+EF+AFNLIGVLLF+GAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSP LEYCPGAL++IS VGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVA+FHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILEVGYA+YSTASHFAYWLGS +AFCT+FYSIRLL+LCFLVEPNGSRSLLL+ASE SWAI LVLGLLAIPSMF+GY  RDLFIGLGT+FWG+SLFCLP NLS+IDAEFM  S KI+PL LS+LGG
Sbjct:  178 LALGIFGIFICFGSVDYATVFAFAPQLSSSTLSFLNIEFEAFNLIGVLLFVGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPFLEYCPGALVIISFVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAIFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEVGYATYSTASHFAYWLGSFAAFCTAFYSIRLLSLCFLVEPNGSRSLLLSASEGSWAIGLVLGLLAIPSMFVGYLSRDLFIGLGTDFWGNSLFCLPFNLSIIDAEFMSTSTKIMPLLLSMLGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: A0A8F0K255_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0K255_9PHAE)

HSP 1 Score: 614 bits (1583), Expect = 7.690e-216
Identity = 304/352 (86.36%), Postives = 333/352 (94.60%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIFICFGAVDYATVFA APQ++S+T+ F N+EF A NLIG+LLF+GAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSP+LE+CP AL++IS+VGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY++MVIGSLALMGMPFLTGFYSKDVILEVGYA+YS ASHFAYWLGS++AFCT+FYSIRLLALCFL EPNGSRSLLL+ASE SW + +VLG+LAIPSMFIGYF RDLFIGLGT+FWG++LFCLP NLS++DAEFM    KI PLC S+LGG
Sbjct:  178 LALGIFGIFICFGAVDYATVFALAPQVSSFTISFFNIEFGALNLIGILLFVGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPILEFCPKALMVISVVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAVMVIGSLALMGMPFLTGFYSKDVILEVGYATYSNASHFAYWLGSLAAFCTAFYSIRLLALCFLAEPNGSRSLLLSASEGSWPMGVVLGILAIPSMFIGYFSRDLFIGLGTDFWGNALFCLPVNLSIVDAEFMSTGIKIFPLCCSVLGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: Q2TUE3_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE3_9PHAE)

HSP 1 Score: 613 bits (1581), Expect = 1.550e-215
Identity = 306/352 (86.93%), Postives = 333/352 (94.60%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIFICFGAVDYATVFA APQL+S+TL F N+EF+A NLIG+LLF+GAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCP ALI+IS+VGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILEVGYA+YS ASHFAYWLGS +AFCT+FYSIRLLALCFL EPNGSRSL+L+ASE   ++ +VLGLLAIPS+FIGY GRDLFIGLGT+FWG++LFCLP NLS++DAEFM  + KI PLC S++GG
Sbjct:  178 LALGIFGIFICFGAVDYATVFALAPQLSSFTLVFFNLEFEALNLIGILLFVGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPKALIVISIVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEVGYATYSNASHFAYWLGSFAAFCTAFYSIRLLALCFLAEPNGSRSLILSASEGGSSMGIVLGLLAIPSIFIGYLGRDLFIGLGTDFWGNALFCLPINLSIVDAEFMSTNIKIFPLCCSMIGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: F8UWN3_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=87 Tax=Phaeophyceae TaxID=2870 RepID=F8UWN3_9PHAE)

HSP 1 Score: 612 bits (1578), Expect = 4.410e-215
Identity = 304/352 (86.36%), Postives = 331/352 (94.03%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIFICFGAVDYATVFA APQL++++L F N+EF A N IG+LLF+GAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCP AL +IS+VGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHL NHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILEVGYA+YS ASHFAYWLGS++AFCT+FYSIRLLALCFL EPNGSRSLLL+ASE  W + LVLG+LA+PSMFIGY GRDLFIGLGT+FWG++LFC+P+NLS+IDAEFM    K+LPLC SI+GG
Sbjct:  178 LALGIFGIFICFGAVDYATVFALAPQLSTFSLSFFNVEFGALNFIGILLFVGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPEALTVISIVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLGNHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEVGYATYSNASHFAYWLGSLAAFCTAFYSIRLLALCFLSEPNGSRSLLLSASEGGWPMGLVLGILALPSMFIGYLGRDLFIGLGTDFWGNALFCMPSNLSIIDAEFMSTDIKLLPLCCSIIGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: A0A8F0K0D6_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K0D6_9PHAE)

HSP 1 Score: 612 bits (1577), Expect = 6.260e-215
Identity = 307/352 (87.22%), Postives = 329/352 (93.47%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIF CFGAVDYATVFA APQL++YT+ F N+EF A NLIG+LLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCP A I+IS+VGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILEVGYASYS +SHFA+W+GS +AFCT+FYSIRLLALCFL EPNGSRS LL+ASE  W + LVLGLLA+PSMFIGYF RDLFIG+GT+FWG++LFCLP NLSLIDAEFM  S K+ PLC S+LGG
Sbjct:  178 LALGIFGIFTCFGAVDYATVFALAPQLSAYTITFFNIEFGALNLIGILLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPKAQIVISIVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSNSSHFAFWMGSFAAFCTAFYSIRLLALCFLAEPNGSRSSLLSASEGGWRMGLVLGLLAVPSMFIGYFSRDLFIGVGTDFWGNALFCLPINLSLIDAEFMSTSIKLFPLCCSMLGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: A0A0U1XC76_SCYLO (NADH-ubiquinone oxidoreductase chain 5 n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A0U1XC76_SCYLO)

HSP 1 Score: 607 bits (1566), Expect = 2.920e-213
Identity = 304/352 (86.36%), Postives = 328/352 (93.18%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIF+CFGAVDYATVFA APQ+AS  L FLN  F A NLIGVLLF+GAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCP AL +IS+VGGMTAF AATTALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILE+ YASYS+ASHFAYWLGS +A CT+FYSIRL+ALCFL EPNGSR  LL+ASE SW + LVLG+LA+PS+FIGYF RDLFIGLGT+FWG++LFCLP+NL++IDAEFM I  KILPLCLS+LGG
Sbjct:  178 LALGIFGIFVCFGAVDYATVFALAPQMASTNLPFLNFSFNALNLIGVLLFVGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPNALFIISVVGGMTAFLAATTALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEISYASYSSASHFAYWLGSFAALCTAFYSIRLIALCFLSEPNGSRRFLLSASEGSWPMGLVLGILAVPSIFIGYFSRDLFIGLGTDFWGNALFCLPSNLNIIDAEFMSIGTKILPLCLSMLGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: A0A0U1V1M9_SARFS (NADH-ubiquinone oxidoreductase chain 5 n=28 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1V1M9_SARFS)

HSP 1 Score: 606 bits (1563), Expect = 8.330e-213
Identity = 307/352 (87.22%), Postives = 331/352 (94.03%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIF IFICFGA+DYATVFAF+PQL S TL FLN++FKA +LIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYC GAL+LIS+VGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHLANHAFFKALLFL AGSVIHAVGDEQDMRKMGGLRRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILE+ YA+YS  +HF+YWLGS++AFCT+FYSIRL+ALCFLVEPNGSR LLL+ASE   AI  VLGLLAIPS+F+GYF RDLFIGLGT+FWGSSLFCLP+NLSLIDAEFM    K+LPLCLSI+GG
Sbjct:  178 LALGIFAIFICFGALDYATVFAFSPQLTSCTLSFLNIKFKALDLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCSGALLLISVVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLSAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEIAYATYSIPAHFSYWLGSLAAFCTAFYSIRLIALCFLVEPNGSRKLLLSASEGGKAIGFVLGLLAIPSIFVGYFSRDLFIGLGTHFWGSSLFCLPSNLSLIDAEFMSTFSKMLPLCLSIVGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: A0A8F0FDC2_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDC2_9PHAE)

HSP 1 Score: 603 bits (1554), Expect = 1.930e-211
Identity = 303/352 (86.08%), Postives = 327/352 (92.90%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGI++CFGAVDYATVFA APQL+S +L F N+E KA NLIGVLLF+GAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCP AL+  S+VGGMTAFFAAT ALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILEVGYA+YS ASHFAYWLGS +AFCT+FYSIRLLALCFLVEPNGSRS+LL+ASE    I LVLGLLAIPS+FIGY GRDLFIGLGT+FWG++LFCLP NL+++DAEFM    K+ PLC S+LGG
Sbjct:  178 LALGIFGIYMCFGAVDYATVFALAPQLSSLSLIFFNIELKALNLIGVLLFVGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPKALMFTSIVGGMTAFFAATIALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEVGYATYSNASHFAYWLGSFAAFCTAFYSIRLLALCFLVEPNGSRSVLLSASEGGVFIGLVLGLLAIPSIFIGYLGRDLFIGLGTDFWGNALFCLPVNLTIVDAEFMLTRIKLFPLCCSVLGG 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: A0A1I9LW32_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW32_9PHAE)

HSP 1 Score: 600 bits (1548), Expect = 1.570e-210
Identity = 301/352 (85.51%), Postives = 327/352 (92.90%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIFICFGAVDY+TVFA APQ++S TL F N+EF A NLIG+LLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEY P AL +IS+VGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTY+ M+IGSLALMGMPFLTGFYSKDVILEVGYA+YS  SHFAYWLGS +AFCT+FYSIRLLALCFL EPNGSR ++L+ASE SW + +VLG+LAIPS+FIGYF RDLFIGLG++FWG++LFCLP NLS+IDAEFM  S KILPLC SI+G 
Sbjct:  178 LALGIFGIFICFGAVDYSTVFALAPQISSLTLSFFNVEFDALNLIGILLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYSPNALFVISIVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYATMLIGSLALMGMPFLTGFYSKDVILEVGYATYSNVSHFAYWLGSFAAFCTAFYSIRLLALCFLSEPNGSRIIVLSASEGSWPMGVVLGILAIPSIFIGYFSRDLFIGLGSDFWGNALFCLPNNLSIIDAEFMSTSTKILPLCFSIIGA 529          
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Match: Q94YZ3_PYLLI (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94YZ3_PYLLI)

HSP 1 Score: 600 bits (1546), Expect = 3.160e-210
Identity = 297/352 (84.38%), Postives = 326/352 (92.61%), Query Frame = 1
Query:    1 LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSISAFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMFIGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSILGG 1056
            LALGIFGIFICFGAVDY+TVFA APQL+  TL F N+ F A NLIG+LLF+GAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYC  AL +I+++GGMTAFFAATTALVQNDLKRVIAYSTCSQLGYM+FACGLSNYSVAVFHLANHAFFKALLFLGAGS+IHAVGDEQDMRKMGG+RRLLPFTY+MMVIGSLALMGMPFLTGFYSKDVILEVGY++YS  SHFAYWLGS +AFCT+FYSIRL+ALCFL EPNG RSLLL+ASESSW + LVLG+LAIPS+FIGY  RDLFIGLGT+FWG++LFCLP NL++IDAEFM  S KI+PLCLS+ G 
Sbjct:  178 LALGIFGIFICFGAVDYSTVFALAPQLSECTLSFFNINFNALNLIGILLFVGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLLEYCSNALFIITIIGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSIIHAVGDEQDMRKMGGIRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDVILEVGYSAYSNVSHFAYWLGSFAAFCTAFYSIRLIALCFLSEPNGGRSLLLSASESSWPMGLVLGILAIPSIFIGYLSRDLFIGLGTDFWGNALFCLPVNLNIIDAEFMTTSIKIIPLCLSMSGA 529          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208112.5995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ84_9PHAE3.250e-22290.34NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Fuc... [more]
A0A8F0K255_9PHAE7.690e-21686.36NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Lam... [more]
Q2TUE3_9PHAE1.550e-21586.93NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Des... [more]
F8UWN3_9PHAE4.410e-21586.36NADH-ubiquinone oxidoreductase chain 5 n=87 Tax=Ph... [more]
A0A8F0K0D6_9PHAE6.260e-21587.22NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Cho... [more]
A0A0U1XC76_SCYLO2.920e-21386.36NADH-ubiquinone oxidoreductase chain 5 n=6 Tax=Ect... [more]
A0A0U1V1M9_SARFS8.330e-21387.22NADH-ubiquinone oxidoreductase chain 5 n=28 Tax=Sa... [more]
A0A8F0FDC2_9PHAE1.930e-21186.08NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Ana... [more]
A0A1I9LW32_9PHAE1.570e-21085.51NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Ple... [more]
Q94YZ3_PYLLI3.160e-21084.38NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208112contigH-elongata_contig208112:1..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score449.1
Seed ortholog evalue1.9e-123
Seed eggNOG ortholog70448.Q0P3F5
Preferred namenad5
KEGG rclassRC00061
KEGG koko:K03883
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
EggNOG free text desc.NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
EggNOG OGs34KBF@3041,37NNE@33090,COG1007@1,KOG4668@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categorychloroplast
Exons1
Model size1056
Cds size1056
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.5876093-CDS-H-elongata_contig208112:0..10561622930163.5876093-CDS-H-elongata_contig208112:0..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208112 1..1056 +
1691679305.3058977-CDS-H-elongata_contig208112:0..10561691679305.3058977-CDS-H-elongata_contig208112:0..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208112 1..1056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208112.5995.1prot_H-elongata_contig208112.5995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208112 1..1056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208112.5995.1

>prot_H-elongata_contig208112.5995.1 ID=prot_H-elongata_contig208112.5995.1|Name=mRNA_H-elongata_contig208112.5995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=352bp
LALGIFGIFICFGAVDYATVFAFAPQLASYTLCFLNMEFKAFNLIGVLLF
IGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLARCSPLL
EYCPGALILISLVGGMTAFFAATTALVQNDLKRVIAYSTCSQLGYMIFAC
GLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLP
FTYSMMVIGSLALMGMPFLTGFYSKDVILEVGYASYSTASHFAYWLGSIS
AFCTSFYSIRLLALCFLVEPNGSRSLLLAASESSWAISLVLGLLAIPSMF
IGYFGRDLFIGLGTNFWGSSLFCLPTNLSLIDAEFMYISFKILPLCLSIL
GG
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mRNA from alignment at H-elongata_contig208112:1..1056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208112.5995.1 ID=mRNA_H-elongata_contig208112.5995.1|Name=mRNA_H-elongata_contig208112.5995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1056bp|location=Sequence derived from alignment at H-elongata_contig208112:1..1056+ (Himanthalia elongata Himel1 dioecious)
TTAGCATTAGGTATATTTGGTATATTTATTTGTTTTGGTGCTGTAGACTA TGCTACAGTGTTTGCTTTTGCGCCTCAATTAGCGTCTTATACTTTATGTT TTTTAAATATGGAATTTAAGGCTTTTAATTTAATAGGAGTTCTTTTGTTT ATAGGTGCTGTAGGAAAATCTGCGCAGCTTGGTTTACATACTTGGTTACC TGATGCTATGGAAGGCCCTACTCCAGTTTCGGCTCTTATTCACGCAGCTA CTATGGTTACTGCAGGAGTTTTTTTGTTGGCTCGTTGTTCCCCACTTTTA GAATATTGCCCTGGAGCTCTTATATTAATAAGTTTAGTAGGTGGTATGAC TGCTTTTTTTGCAGCTACCACAGCATTAGTTCAAAATGATTTAAAACGAG TTATTGCATATTCCACTTGCAGTCAATTAGGTTACATGATATTTGCATGT GGGCTATCTAATTATTCAGTAGCTGTATTTCATTTAGCTAATCATGCTTT TTTTAAAGCTCTTTTGTTTTTAGGTGCGGGATCGGTTATACACGCAGTAG GGGATGAACAAGATATGAGAAAAATGGGTGGTCTACGGCGTTTATTGCCG TTTACTTATTCTATGATGGTAATAGGTTCATTAGCTCTTATGGGTATGCC TTTTCTTACAGGATTTTATTCGAAAGACGTTATTCTAGAAGTTGGGTATG CGTCATATTCAACAGCGTCGCATTTTGCTTATTGGTTGGGGAGTATTTCA GCTTTTTGTACGTCTTTTTATTCTATTAGGTTACTTGCTTTATGTTTTTT AGTAGAACCAAATGGAAGCCGGTCATTACTACTTGCAGCTTCTGAAAGCA GTTGGGCTATAAGTTTGGTTCTCGGTTTATTAGCAATACCTAGTATGTTT ATAGGTTATTTTGGTCGCGATTTATTTATTGGACTAGGTACCAATTTTTG GGGAAGTTCTTTATTTTGTTTACCAACTAATTTAAGTTTAATAGATGCTG AGTTTATGTACATTTCTTTTAAAATTTTACCATTATGTTTAAGTATTCTT GGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig208112:1..1056+

>mRNA_H-elongata_contig208112.5995.1 ID=mRNA_H-elongata_contig208112.5995.1|Name=mRNA_H-elongata_contig208112.5995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2112bp|location=Sequence derived from alignment at H-elongata_contig208112:1..1056+ (Himanthalia elongata Himel1 dioecious)
TTAGCATTAGGTATATTTGGTATATTTATTTGTTTTGGTGCTGTAGACTA
TGCTACAGTGTTTGCTTTTGCGCCTCAATTAGCGTCTTATACTTTATGTT
TTTTAAATATGGAATTTAAGGCTTTTAATTTAATAGGAGTTCTTTTGTTT
ATAGGTGCTGTAGGAAAATCTGCGCAGCTTGGTTTACATACTTGGTTACC
TGATGCTATGGAAGGCCCTACTCCAGTTTCGGCTCTTATTCACGCAGCTA
CTATGGTTACTGCAGGAGTTTTTTTGTTGGCTCGTTGTTCCCCACTTTTA
GAATATTGCCCTGGAGCTCTTATATTAATAAGTTTAGTAGGTGGTATGAC
TGCTTTTTTTGCAGCTACCACAGCATTAGTTCAAAATGATTTAAAACGAG
TTATTGCATATTCCACTTGCAGTCAATTAGGTTACATGATATTTGCATGT
GGGCTATCTAATTATTCAGTAGCTGTATTTCATTTAGCTAATCATGCTTT
TTTTAAAGCTCTTTTGTTTTTAGGTGCGGGATCGGTTATACACGCAGTAG
GGGATGAACAAGATATGAGAAAAATGGGTGGTCTACGGCGTTTATTGCCG
TTTACTTATTCTATGATGGTAATAGGTTCATTAGCTCTTATGGGTATGCC
TTTTCTTACAGGATTTTATTCGAAAGACGTTATTCTAGAAGTTGGGTATG
CGTCATATTCAACAGCGTCGCATTTTGCTTATTGGTTGGGGAGTATTTCA
GCTTTTTGTACGTCTTTTTATTCTATTAGGTTACTTGCTTTATGTTTTTT
AGTAGAACCAAATGGAAGCCGGTCATTACTACTTGCAGCTTCTGAAAGCA
GTTGGGCTATAAGTTTGGTTCTCGGTTTATTAGCAATACCTAGTATGTTT
ATAGGTTATTTTGGTCGCGATTTATTTATTGGACTAGGTACCAATTTTTG
GGGAAGTTCTTTATTTTGTTTACCAACTAATTTAAGTTTAATAGATGCTG
AGTTTATGTACATTTCTTTTAAAATTTTACCATTATGTTTAAGTATTCTT
GGAGGGTTAGCATTAGGTATATTTGGTATATTTATTTGTTTTGGTGCTGT
AGACTATGCTACAGTGTTTGCTTTTGCGCCTCAATTAGCGTCTTATACTT
TATGTTTTTTAAATATGGAATTTAAGGCTTTTAATTTAATAGGAGTTCTT
TTGTTTATAGGTGCTGTAGGAAAATCTGCGCAGCTTGGTTTACATACTTG
GTTACCTGATGCTATGGAAGGCCCTACTCCAGTTTCGGCTCTTATTCACG
CAGCTACTATGGTTACTGCAGGAGTTTTTTTGTTGGCTCGTTGTTCCCCA
CTTTTAGAATATTGCCCTGGAGCTCTTATATTAATAAGTTTAGTAGGTGG
TATGACTGCTTTTTTTGCAGCTACCACAGCATTAGTTCAAAATGATTTAA
AACGAGTTATTGCATATTCCACTTGCAGTCAATTAGGTTACATGATATTT
GCATGTGGGCTATCTAATTATTCAGTAGCTGTATTTCATTTAGCTAATCA
TGCTTTTTTTAAAGCTCTTTTGTTTTTAGGTGCGGGATCGGTTATACACG
CAGTAGGGGATGAACAAGATATGAGAAAAATGGGTGGTCTACGGCGTTTA
TTGCCGTTTACTTATTCTATGATGGTAATAGGTTCATTAGCTCTTATGGG
TATGCCTTTTCTTACAGGATTTTATTCGAAAGACGTTATTCTAGAAGTTG
GGTATGCGTCATATTCAACAGCGTCGCATTTTGCTTATTGGTTGGGGAGT
ATTTCAGCTTTTTGTACGTCTTTTTATTCTATTAGGTTACTTGCTTTATG
TTTTTTAGTAGAACCAAATGGAAGCCGGTCATTACTACTTGCAGCTTCTG
AAAGCAGTTGGGCTATAAGTTTGGTTCTCGGTTTATTAGCAATACCTAGT
ATGTTTATAGGTTATTTTGGTCGCGATTTATTTATTGGACTAGGTACCAA
TTTTTGGGGAAGTTCTTTATTTTGTTTACCAACTAATTTAAGTTTAATAG
ATGCTGAGTTTATGTACATTTCTTTTAAAATTTTACCATTATGTTTAAGT
ATTCTTGGAGGG
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