mRNA_H-elongata_contig208100.5994.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208100.5994.1
Unique NamemRNA_H-elongata_contig208100.5994.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: D8LFY1_ECTSI (Diphthine--ammonia ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY1_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 6.870e-29
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVASFGLEPSKHLG+SLARLRP FE+LH RCGFHVCGEGGEYETLTLDCPLFVR+LV
Sbjct:  117 KVASFGLEPSKHLGRSLARLRPFFESLHSRCGFHVCGEGGEYETLTLDCPLFVRKLV 173
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: A0A835YTU4_9STRA (Diphthine--ammonia ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.450e-24
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVAS GL+P KHLGKS+ARL+PHF TL  R GFHVCGEGGEYETLTLDCP FVRRLV
Sbjct:  117 KVASLGLDPHKHLGKSVARLQPHFLTLAARHGFHVCGEGGEYETLTLDCPAFVRRLV 173
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: UPI00094F0848 (diphthine--ammonia ligase isoform X3 n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094F0848)

HSP 1 Score: 91.3 bits (225), Expect = 5.390e-21
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+FGL+P KHLGKSLA + P+ + L ++ G H+CGEGGEYETLTLDCPLF +RLV
Sbjct:  160 KVAAFGLDPDKHLGKSLAEMAPYLKQLSQKYGVHICGEGGEYETLTLDCPLFKKRLV 216
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: UPI001ABDA05B (diphthine--ammonia ligase isoform X4 n=1 Tax=Bufo bufo TaxID=8384 RepID=UPI001ABDA05B)

HSP 1 Score: 91.7 bits (226), Expect = 1.050e-20
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+FGL+P KHLGKSL  +RPH   L  R G HVCGEGGEYETLTLDCPLF +++V
Sbjct:  162 KVAAFGLDPDKHLGKSLEEMRPHLMQLSARYGVHVCGEGGEYETLTLDCPLFKKKIV 218
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: A0A8C6Q3B1_NOTFU (Diphthine--ammonia ligase n=3 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6Q3B1_NOTFU)

HSP 1 Score: 89.7 bits (221), Expect = 1.800e-20
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+FGL+P KHLGKSLA ++PH + L  + G H+CGEGGEYET TLDCPLF +++V
Sbjct:  160 KVAAFGLDPEKHLGKSLADMKPHLKQLSTKYGVHICGEGGEYETFTLDCPLFKKKIV 216
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: A0A3B4BCG1_9GOBI (Diphthine--ammonia ligase n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BCG1_9GOBI)

HSP 1 Score: 89.7 bits (221), Expect = 1.890e-20
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+ GL+P KHLGKSLA+++P+   L K+ G H+CGEGGEYET TLDCPLF RR+V
Sbjct:  159 KVAAVGLDPEKHLGKSLAQMQPYLRQLSKKYGVHICGEGGEYETFTLDCPLFKRRIV 215
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: A0A7M4FM42_CROPO (Diphthine--ammonia ligase n=1 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4FM42_CROPO)

HSP 1 Score: 89.4 bits (220), Expect = 2.530e-20
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+FGL+P KHLGK+L ++ P+   L K+CG H+CGEGGEYET TLDCPLF +++V
Sbjct:  161 KVAAFGLDPDKHLGKTLDQMEPYLLELSKKCGVHICGEGGEYETFTLDCPLFKKKIV 217
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: A0A3Q3AE74_KRYMA (Diphthine--ammonia ligase n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3AE74_KRYMA)

HSP 1 Score: 89.4 bits (220), Expect = 2.890e-20
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+FGL+P KHLGKSLA + PH + L  + G H+CGEGGEYET TLDCPLF +++V
Sbjct:  160 KVAAFGLDPEKHLGKSLADMEPHLKQLSNKYGVHICGEGGEYETFTLDCPLFKKKIV 216
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: UPI001CF1B1C0 (diphthine--ammonia ligase n=4 Tax=Bufo TaxID=8383 RepID=UPI001CF1B1C0)

HSP 1 Score: 91.7 bits (226), Expect = 3.120e-20
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+FGL+P KHLGKSL  +RPH   L  R G HVCGEGGEYETLTLDCPLF +++V
Sbjct:  162 KVAAFGLDPDKHLGKSLEEMRPHLMQLSARYGVHVCGEGGEYETLTLDCPLFKKKIV 218
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BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Match: A0A822HUQ1_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822HUQ1_9NEOB)

HSP 1 Score: 85.5 bits (210), Expect = 3.230e-20
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCPLFVRRLV 171
            KVA+FGL+P KHLGKSL  +RP    L  + G HVCGEGGEYETLTLDCPLF ++++
Sbjct:   12 KVAAFGLDPDKHLGKSLEEMRPLLMRLSSQYGVHVCGEGGEYETLTLDCPLFRKKII 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208100.5994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFY1_ECTSI6.870e-2991.23Diphthine--ammonia ligase n=1 Tax=Ectocarpus silic... [more]
A0A835YTU4_9STRA9.450e-2482.46Diphthine--ammonia ligase n=1 Tax=Tribonema minus ... [more]
UPI00094F08485.390e-2168.42diphthine--ammonia ligase isoform X3 n=1 Tax=Hippo... [more]
UPI001ABDA05B1.050e-2070.18diphthine--ammonia ligase isoform X4 n=1 Tax=Bufo ... [more]
A0A8C6Q3B1_NOTFU1.800e-2064.91Diphthine--ammonia ligase n=3 Tax=Nothobranchius f... [more]
A0A3B4BCG1_9GOBI1.890e-2066.67Diphthine--ammonia ligase n=1 Tax=Periophthalmus m... [more]
A0A7M4FM42_CROPO2.530e-2063.16Diphthine--ammonia ligase n=1 Tax=Crocodylus poros... [more]
A0A3Q3AE74_KRYMA2.890e-2064.91Diphthine--ammonia ligase n=1 Tax=Kryptolebias mar... [more]
UPI001CF1B1C03.120e-2070.18diphthine--ammonia ligase n=4 Tax=Bufo TaxID=8383 ... [more]
A0A822HUQ1_9NEOB3.230e-2064.91(mimic poison frog) hypothetical protein n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208100contigH-elongata_contig208100:233..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue3.6e-24
Seed eggNOG ortholog2880.D8LFY1
Preferred nameHRSP12
KEGG rclassRC00296,RC00358,RC01015,RC03275,RC03354
KEGG koko:K06927,ko:K06965,ko:K09022,ko:K13761,ko:K15067,ko:K19783
KEGG ReactionR01234,R03613,R03887,R11098,R11099
KEGG Pathwayko00230,ko00380,ko03015,map00230,map00380,map03015
GOsGO:0001505,GO:0001655,GO:0001822,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005504,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005773,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006412,GO:0006417,GO:0006448,GO:0006457,GO:0006464,GO:0006518,GO:0006520,GO:0006544,GO:0006549,GO:0006566,GO:0006567,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008285,GO:0008289,GO:0008652,GO:0009056,GO:0009058,GO:0009059,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009081,GO:0009082,GO:0009097,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009889,GO:0009890,GO:0009892,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016053,GO:0016054,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016879,GO:0016880,GO:0016892,GO:0016894,GO:0017144,GO:0017148,GO:0017178,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019239,GO:0019518,GO:0019538,GO:0019752,GO:0022402,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032543,GO:0033293,GO:0033993,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0035295,GO:0036041,GO:0036094,GO:0036211,GO:0042127,GO:0042133,GO:0042221,GO:0042579,GO:0042737,GO:0042802,GO:0042803,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0060322,GO:0060541,GO:0065007,GO:0065008,GO:0070013,GO:0070314,GO:0071704,GO:0072001,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140053,GO:0140098,GO:1900247,GO:1901360,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1902074,GO:1904012,GO:1904013,GO:2000112,GO:2000113,GO:2000765
EggNOG free text desc.diphthine-ammonia ligase activity
EggNOG OGsCOG0251@1,COG2102@1,KOG2316@2759,KOG2317@2759
EC3.1.4.35,3.5.99.10,3.5.99.5,3.6.4.12,6.3.1.14
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012,ko03032
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.541734-CDS-H-elongata_contig208100:232..4031622930163.541734-CDS-H-elongata_contig208100:232..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208100 233..403 +
1691679305.2889411-CDS-H-elongata_contig208100:232..4031691679305.2889411-CDS-H-elongata_contig208100:232..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208100 233..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208100.5994.1prot_H-elongata_contig208100.5994.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208100 233..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208100.5994.1

>prot_H-elongata_contig208100.5994.1 ID=prot_H-elongata_contig208100.5994.1|Name=mRNA_H-elongata_contig208100.5994.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
KVASFGLEPSKHLGKSLARLRPHFETLHKRCGFHVCGEGGEYETLTLDCP
LFVRRLV
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mRNA from alignment at H-elongata_contig208100:233..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208100.5994.1 ID=mRNA_H-elongata_contig208100.5994.1|Name=mRNA_H-elongata_contig208100.5994.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig208100:233..403+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCTTCCTTCGGACTGGAGCCGTCGAAACACCTTGGGAAATCCCT
CGCGCGGCTGCGGCCCCACTTCGAGACTCTCCACAAGCGGTGCGGCTTCC
ACGTTTGCGGTGAGGGAGGCGAGTACGAAACGCTCACGCTGGACTGCCCG
CTCTTTGTTCGCCGTCTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig208100:233..403+

>mRNA_H-elongata_contig208100.5994.1 ID=mRNA_H-elongata_contig208100.5994.1|Name=mRNA_H-elongata_contig208100.5994.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig208100:233..403+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCTTCCTTCGGACTGGAGCCGTCGAAACACCTTGGGAAATCCCT
CGCGCGGCTGCGGCCCCACTTCGAGACTCTCCACAAGCGGTGCGGCTTCC
ACGTTTGCGGTGAGGGAGGCGAGTACGAAACGCTCACGCTGGACTGCCCG
CTCTTTGTTCGCCGTCTGGTGAAGGTGGCTTCCTTCGGACTGGAGCCGTC
GAAACACCTTGGGAAATCCCTCGCGCGGCTGCGGCCCCACTTCGAGACTC
TCCACAAGCGGTGCGGCTTCCACGTTTGCGGTGAGGGAGGCGAGTACGAA
ACGCTCACGCTGGACTGCCCGCTCTTTGTTCGCCGTCTGGTG
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